The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
- Autores
- Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato
- Año de publicación
- 2016
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance.
Fil: Tagliazucchi, Enzo. Christian Albrechts Universitat Zu Kiel.; Alemania. University Frankfurt am Main; Alemania
Fil: Siniatchkin, Michael. Christian Albrechts Universitat Zu Kiel.; Alemania
Fil: Laufs, Helmut. University Frankfurt am Main; Alemania. University Hospital Schleswig Holstein; Alemania
Fil: Chialvo, Dante Renato. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de San Martin. Escuela de Ciencia y Tecnologia. Centro de Estudios Multidisciplinarios En Sistemas Complejos y Ciencias del Cerebro.; Argentina - Materia
-
DIMENSIONALITY REDUCTION
FUNCTIONAL CONNECTIVITY
FUNCTIONAL CONNECTOME
POINT PROCESS
RESTING STATE FMRI - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/114912
Ver los metadatos del registro completo
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The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-processTagliazucchi, EnzoSiniatchkin, MichaelLaufs, HelmutChialvo, Dante RenatoDIMENSIONALITY REDUCTIONFUNCTIONAL CONNECTIVITYFUNCTIONAL CONNECTOMEPOINT PROCESSRESTING STATE FMRIhttps://purl.org/becyt/ford/1.3https://purl.org/becyt/ford/1Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance.Fil: Tagliazucchi, Enzo. Christian Albrechts Universitat Zu Kiel.; Alemania. University Frankfurt am Main; AlemaniaFil: Siniatchkin, Michael. Christian Albrechts Universitat Zu Kiel.; AlemaniaFil: Laufs, Helmut. University Frankfurt am Main; Alemania. University Hospital Schleswig Holstein; AlemaniaFil: Chialvo, Dante Renato. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de San Martin. Escuela de Ciencia y Tecnologia. Centro de Estudios Multidisciplinarios En Sistemas Complejos y Ciencias del Cerebro.; ArgentinaFrontiers Media S.A.2016-08info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/114912Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato; The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process; Frontiers Media S.A.; Frontiers in Neuroscience; 10; 8-2016; 1-391662-453XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://journal.frontiersin.org/article/10.3389/fnins.2016.00381/abstract#info:eu-repo/semantics/altIdentifier/doi/10.3389/fnins.2016.00381info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T13:08:09Zoai:ri.conicet.gov.ar:11336/114912instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 13:08:10.147CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process |
title |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process |
spellingShingle |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process Tagliazucchi, Enzo DIMENSIONALITY REDUCTION FUNCTIONAL CONNECTIVITY FUNCTIONAL CONNECTOME POINT PROCESS RESTING STATE FMRI |
title_short |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process |
title_full |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process |
title_fullStr |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process |
title_full_unstemmed |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process |
title_sort |
The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process |
dc.creator.none.fl_str_mv |
Tagliazucchi, Enzo Siniatchkin, Michael Laufs, Helmut Chialvo, Dante Renato |
author |
Tagliazucchi, Enzo |
author_facet |
Tagliazucchi, Enzo Siniatchkin, Michael Laufs, Helmut Chialvo, Dante Renato |
author_role |
author |
author2 |
Siniatchkin, Michael Laufs, Helmut Chialvo, Dante Renato |
author2_role |
author author author |
dc.subject.none.fl_str_mv |
DIMENSIONALITY REDUCTION FUNCTIONAL CONNECTIVITY FUNCTIONAL CONNECTOME POINT PROCESS RESTING STATE FMRI |
topic |
DIMENSIONALITY REDUCTION FUNCTIONAL CONNECTIVITY FUNCTIONAL CONNECTOME POINT PROCESS RESTING STATE FMRI |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.3 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance. Fil: Tagliazucchi, Enzo. Christian Albrechts Universitat Zu Kiel.; Alemania. University Frankfurt am Main; Alemania Fil: Siniatchkin, Michael. Christian Albrechts Universitat Zu Kiel.; Alemania Fil: Laufs, Helmut. University Frankfurt am Main; Alemania. University Hospital Schleswig Holstein; Alemania Fil: Chialvo, Dante Renato. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de San Martin. Escuela de Ciencia y Tecnologia. Centro de Estudios Multidisciplinarios En Sistemas Complejos y Ciencias del Cerebro.; Argentina |
description |
Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-08 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/114912 Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato; The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process; Frontiers Media S.A.; Frontiers in Neuroscience; 10; 8-2016; 1-39 1662-453X CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/114912 |
identifier_str_mv |
Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato; The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process; Frontiers Media S.A.; Frontiers in Neuroscience; 10; 8-2016; 1-39 1662-453X CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/http://journal.frontiersin.org/article/10.3389/fnins.2016.00381/abstract# info:eu-repo/semantics/altIdentifier/doi/10.3389/fnins.2016.00381 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Frontiers Media S.A. |
publisher.none.fl_str_mv |
Frontiers Media S.A. |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
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Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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12.993085 |