The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process

Autores
Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance.
Fil: Tagliazucchi, Enzo. Christian Albrechts Universitat Zu Kiel.; Alemania. University Frankfurt am Main; Alemania
Fil: Siniatchkin, Michael. Christian Albrechts Universitat Zu Kiel.; Alemania
Fil: Laufs, Helmut. University Frankfurt am Main; Alemania. University Hospital Schleswig Holstein; Alemania
Fil: Chialvo, Dante Renato. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de San Martin. Escuela de Ciencia y Tecnologia. Centro de Estudios Multidisciplinarios En Sistemas Complejos y Ciencias del Cerebro.; Argentina
Materia
DIMENSIONALITY REDUCTION
FUNCTIONAL CONNECTIVITY
FUNCTIONAL CONNECTOME
POINT PROCESS
RESTING STATE FMRI
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/114912

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spelling The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-processTagliazucchi, EnzoSiniatchkin, MichaelLaufs, HelmutChialvo, Dante RenatoDIMENSIONALITY REDUCTIONFUNCTIONAL CONNECTIVITYFUNCTIONAL CONNECTOMEPOINT PROCESSRESTING STATE FMRIhttps://purl.org/becyt/ford/1.3https://purl.org/becyt/ford/1Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance.Fil: Tagliazucchi, Enzo. Christian Albrechts Universitat Zu Kiel.; Alemania. University Frankfurt am Main; AlemaniaFil: Siniatchkin, Michael. Christian Albrechts Universitat Zu Kiel.; AlemaniaFil: Laufs, Helmut. University Frankfurt am Main; Alemania. University Hospital Schleswig Holstein; AlemaniaFil: Chialvo, Dante Renato. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de San Martin. Escuela de Ciencia y Tecnologia. Centro de Estudios Multidisciplinarios En Sistemas Complejos y Ciencias del Cerebro.; ArgentinaFrontiers Media S.A.2016-08info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/114912Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato; The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process; Frontiers Media S.A.; Frontiers in Neuroscience; 10; 8-2016; 1-391662-453XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://journal.frontiersin.org/article/10.3389/fnins.2016.00381/abstract#info:eu-repo/semantics/altIdentifier/doi/10.3389/fnins.2016.00381info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T13:08:09Zoai:ri.conicet.gov.ar:11336/114912instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 13:08:10.147CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
title The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
spellingShingle The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
Tagliazucchi, Enzo
DIMENSIONALITY REDUCTION
FUNCTIONAL CONNECTIVITY
FUNCTIONAL CONNECTOME
POINT PROCESS
RESTING STATE FMRI
title_short The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
title_full The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
title_fullStr The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
title_full_unstemmed The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
title_sort The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process
dc.creator.none.fl_str_mv Tagliazucchi, Enzo
Siniatchkin, Michael
Laufs, Helmut
Chialvo, Dante Renato
author Tagliazucchi, Enzo
author_facet Tagliazucchi, Enzo
Siniatchkin, Michael
Laufs, Helmut
Chialvo, Dante Renato
author_role author
author2 Siniatchkin, Michael
Laufs, Helmut
Chialvo, Dante Renato
author2_role author
author
author
dc.subject.none.fl_str_mv DIMENSIONALITY REDUCTION
FUNCTIONAL CONNECTIVITY
FUNCTIONAL CONNECTOME
POINT PROCESS
RESTING STATE FMRI
topic DIMENSIONALITY REDUCTION
FUNCTIONAL CONNECTIVITY
FUNCTIONAL CONNECTOME
POINT PROCESS
RESTING STATE FMRI
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.3
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance.
Fil: Tagliazucchi, Enzo. Christian Albrechts Universitat Zu Kiel.; Alemania. University Frankfurt am Main; Alemania
Fil: Siniatchkin, Michael. Christian Albrechts Universitat Zu Kiel.; Alemania
Fil: Laufs, Helmut. University Frankfurt am Main; Alemania. University Hospital Schleswig Holstein; Alemania
Fil: Chialvo, Dante Renato. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de San Martin. Escuela de Ciencia y Tecnologia. Centro de Estudios Multidisciplinarios En Sistemas Complejos y Ciencias del Cerebro.; Argentina
description Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions based on large neuroimaging databases. The exploratory unraveling of this "functional connectome" based on functional Magnetic Resonance Imaging (fMRI) can benefit from a better understanding of the contributors to resting state functional connectivity. In this work, we introduce a sparse representation of fMRI data in the form of a discrete point-process encoding high-amplitude events in the blood oxygenation level-dependent (BOLD) signal and we show it contains sufficient information for the estimation of functional connectivity between all pairs of voxels. We validate this method by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n = 71), we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n = 1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring only data on the order of 1% of the original BOLD signal time series. Furthermore, we establish that the point-process approach does not reduce (and in one case increases) classification accuracy compared to standard linear correlations. Our results show how large fMRI datasets can be drastically simplified to include only the timings of large-amplitude events, while still allowing the recovery of all pair-wise interactions between voxels. The practical importance of this dimensionality reduction is manifest in the increasing number of collaborative efforts aiming to study large cohorts of healthy subjects as well as patients suffering from brain disease. Our method also suggests that the electrophysiological signals underlying the dynamics of fMRI time series consist of all-or-none temporally localized events, analogous to the avalanches of neural activity observed in recordings of local field potentials (LFP), an observation of potentially high neurobiological relevance.
publishDate 2016
dc.date.none.fl_str_mv 2016-08
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/114912
Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato; The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process; Frontiers Media S.A.; Frontiers in Neuroscience; 10; 8-2016; 1-39
1662-453X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/114912
identifier_str_mv Tagliazucchi, Enzo; Siniatchkin, Michael; Laufs, Helmut; Chialvo, Dante Renato; The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process; Frontiers Media S.A.; Frontiers in Neuroscience; 10; 8-2016; 1-39
1662-453X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/http://journal.frontiersin.org/article/10.3389/fnins.2016.00381/abstract#
info:eu-repo/semantics/altIdentifier/doi/10.3389/fnins.2016.00381
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Frontiers Media S.A.
publisher.none.fl_str_mv Frontiers Media S.A.
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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