Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America

Autores
Gaines, Todd A.; Slavov, Gancho T.; Hughes, David; Küpper, Anita; Sparks, Crystal D.; Oliva, Julian Hipólito del Corazón de María; Vila-Aiub, Martin M.; García, M. Alejandro; Merotto, Aldo; Neve, Paul
Año de publicación
2021
Idioma
español castellano
Tipo de recurso
artículo
Estado
versión aceptada
Descripción
The global invasion, and subsequent spread and evolution of weeds provides unique opportunities to address fundamental questions in evolutionary and invasion ecology. Amaranthus palmeri is a widespread glyphosate-resistant (GR) weed in the USA. Since 2015, GR populations of A. palmeri have been confirmed in South America, raising questions about introduction pathways and the importance of pre- vs. post-invasion evolution of GR traits. We used RAD-sequencing genotyping to characterize genetic structure of populations from Brazil, Argentina, Uruguay and the USA. We also quantified gene copy number of the glyphosate target, 5-enolpyruvyl-3-shikimate phosphate synthase (EPSPS), and the presence of an extrachromosomal circular DNA (eccDNA) replicon known to confer glyphosate resistance in USA populations. Populations in Brazil, Argentina and Uruguay were only weakly differentiated (pairwise FST ≤0.043) in comparison to USA populations (mean pairwise FST =0.161, range =0.068–0.258), suggesting a single major invasion event. However, elevated EPSPS copy number andthe EPSPS replicon were identified in all populations from Brazil and Uruguay, but only in a single Argentinean population. These observations are consistent with independent in situ evolution of glyphosate resistance in Argentina, followed by some limited recent migration of the eccDNA-based mechanism from Brazil to Argentina. Taken together, our results are consistent with an initial introduction of A. palmeri into South America sometime before the 1980s, and local evolution of GR in Argentina, followed by a secondary invasion of GR A. palmeri with the unique eccDNA-based mechanism from the USA into Brazil and Uruguay during the 2010s.
Fil: Gaines, Todd A. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
Fil: Slavov, Gancho T. Rothamsted Research, West Common, Harpenden, Hertfordshire, UK
Fil: Hughes, David. Rothamsted Research, West Common, Harpenden, Hertfordshire, UK
Fil: Küpper, Anita. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
Fil: Sparks, Crystal D. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
Fil: Oliva, Julian Hipólito del Corazón de María. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; Argentina
Fil: Vila-Aiub, Martin M. IFEVA - CONICET – Faculty of Agronomy, Department of Ecology, University of Buenos Aires (UBA), Buenos Aires, Argentina
Fil: García, M. Alejandro. Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental INIA La Estanzuela, Colonia, Uruguay
Fil: Merotto, Aldo. Department of Crop Science, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil
Fil: Neve, Paul. Plant & Environmental Sciences Department, University of Copenhagen, Tåstrup, Denmark
Fuente
Gaines, Todd A. ORCID: https://orcid.org/0000-0003-1485-7665 , Slavov, Gancho T. ORCID: https://orcid.org/0000-0001-8565-9098 , Hughes, David, Küpper, Anita ORCID: https://orcid.org/0000-0001-5122-1514 , Sparks, Crystal D. ORCID: https://orcid.org/0000-0002-6674-8447 , Oliva, Julian Hipólito del Corazón de María, Vila-Aiub, Martin M. ORCID: https://orcid.org/0000-0003-2118-290X , García, M. Alejandro, Merotto, Aldo ORCID: https://orcid.org/0000-0002-1581-0669 and Neve, Paul ORCID: https://orcid.org/0000-0002-3136-5286 (2021) Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America. Molecular Ecology (30). pp. 5360-5372. ISSN 0962-1083
Materia
SB Cultura de la planta
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/4.0/deed.es
Repositorio
Producción Académica (UCC)
Institución
Universidad Católica de Córdoba
OAI Identificador
oai:pa.bibdigital.uccor.edu.ar:3957

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network_name_str Producción Académica (UCC)
spelling Investigating the origins and evolution of a glyphosate-resistant weed invasion in South AmericaGaines, Todd A.Slavov, Gancho T.Hughes, DavidKüpper, AnitaSparks, Crystal D.Oliva, Julian Hipólito del Corazón de MaríaVila-Aiub, Martin M.García, M. AlejandroMerotto, AldoNeve, PaulSB Cultura de la plantaThe global invasion, and subsequent spread and evolution of weeds provides unique opportunities to address fundamental questions in evolutionary and invasion ecology. Amaranthus palmeri is a widespread glyphosate-resistant (GR) weed in the USA. Since 2015, GR populations of A. palmeri have been confirmed in South America, raising questions about introduction pathways and the importance of pre- vs. post-invasion evolution of GR traits. We used RAD-sequencing genotyping to characterize genetic structure of populations from Brazil, Argentina, Uruguay and the USA. We also quantified gene copy number of the glyphosate target, 5-enolpyruvyl-3-shikimate phosphate synthase (EPSPS), and the presence of an extrachromosomal circular DNA (eccDNA) replicon known to confer glyphosate resistance in USA populations. Populations in Brazil, Argentina and Uruguay were only weakly differentiated (pairwise FST ≤0.043) in comparison to USA populations (mean pairwise FST =0.161, range =0.068–0.258), suggesting a single major invasion event. However, elevated EPSPS copy number andthe EPSPS replicon were identified in all populations from Brazil and Uruguay, but only in a single Argentinean population. These observations are consistent with independent in situ evolution of glyphosate resistance in Argentina, followed by some limited recent migration of the eccDNA-based mechanism from Brazil to Argentina. Taken together, our results are consistent with an initial introduction of A. palmeri into South America sometime before the 1980s, and local evolution of GR in Argentina, followed by a secondary invasion of GR A. palmeri with the unique eccDNA-based mechanism from the USA into Brazil and Uruguay during the 2010s.Fil: Gaines, Todd A. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USAFil: Slavov, Gancho T. Rothamsted Research, West Common, Harpenden, Hertfordshire, UKFil: Hughes, David. Rothamsted Research, West Common, Harpenden, Hertfordshire, UKFil: Küpper, Anita. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USAFil: Sparks, Crystal D. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USAFil: Oliva, Julian Hipólito del Corazón de María. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; ArgentinaFil: Vila-Aiub, Martin M. IFEVA - CONICET – Faculty of Agronomy, Department of Ecology, University of Buenos Aires (UBA), Buenos Aires, ArgentinaFil: García, M. Alejandro. Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental INIA La Estanzuela, Colonia, UruguayFil: Merotto, Aldo. Department of Crop Science, Federal University of Rio Grande do Sul, Porto Alegre, RS, BrazilFil: Neve, Paul. Plant & Environmental Sciences Department, University of Copenhagen, Tåstrup, DenmarkWiley Blackwell2021-09-15info:eu-repo/semantics/articleinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://pa.bibdigital.ucc.edu.ar/3957/1/A_Gaines_Slavov_Hughes_K%C3%BCpper_Sparks_Oliva_VilaAiub_Garc%C3%ADa_Merotto_Neve.pdf Gaines, Todd A. ORCID: https://orcid.org/0000-0003-1485-7665 <https://orcid.org/0000-0003-1485-7665>, Slavov, Gancho T. ORCID: https://orcid.org/0000-0001-8565-9098 <https://orcid.org/0000-0001-8565-9098>, Hughes, David, Küpper, Anita ORCID: https://orcid.org/0000-0001-5122-1514 <https://orcid.org/0000-0001-5122-1514>, Sparks, Crystal D. ORCID: https://orcid.org/0000-0002-6674-8447 <https://orcid.org/0000-0002-6674-8447>, Oliva, Julian Hipólito del Corazón de María, Vila-Aiub, Martin M. ORCID: https://orcid.org/0000-0003-2118-290X <https://orcid.org/0000-0003-2118-290X>, García, M. Alejandro, Merotto, Aldo ORCID: https://orcid.org/0000-0002-1581-0669 <https://orcid.org/0000-0002-1581-0669> and Neve, Paul ORCID: https://orcid.org/0000-0002-3136-5286 <https://orcid.org/0000-0002-3136-5286> (2021) Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America. Molecular Ecology (30). pp. 5360-5372. ISSN 0962-1083 reponame:Producción Académica (UCC)instname:Universidad Católica de Córdobaspahttp://pa.bibdigital.ucc.edu.ar/3957/info:eu-repo/semantics/altIdentifier/doi/DOI: 10.1111/mec.16221info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/4.0/deed.es2025-10-23T11:18:01Zoai:pa.bibdigital.uccor.edu.ar:3957instacron:UCCInstitucionalhttp://pa.bibdigital.uccor.edu.ar/Universidad privadaNo correspondehttp://pa.bibdigital.uccor.edu.ar/cgi/oai2bibdir@uccor.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:27182025-10-23 11:18:01.942Producción Académica (UCC) - Universidad Católica de Córdobafalse
dc.title.none.fl_str_mv Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
title Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
spellingShingle Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
Gaines, Todd A.
SB Cultura de la planta
title_short Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
title_full Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
title_fullStr Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
title_full_unstemmed Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
title_sort Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
dc.creator.none.fl_str_mv Gaines, Todd A.
Slavov, Gancho T.
Hughes, David
Küpper, Anita
Sparks, Crystal D.
Oliva, Julian Hipólito del Corazón de María
Vila-Aiub, Martin M.
García, M. Alejandro
Merotto, Aldo
Neve, Paul
author Gaines, Todd A.
author_facet Gaines, Todd A.
Slavov, Gancho T.
Hughes, David
Küpper, Anita
Sparks, Crystal D.
Oliva, Julian Hipólito del Corazón de María
Vila-Aiub, Martin M.
García, M. Alejandro
Merotto, Aldo
Neve, Paul
author_role author
author2 Slavov, Gancho T.
Hughes, David
Küpper, Anita
Sparks, Crystal D.
Oliva, Julian Hipólito del Corazón de María
Vila-Aiub, Martin M.
García, M. Alejandro
Merotto, Aldo
Neve, Paul
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv SB Cultura de la planta
topic SB Cultura de la planta
dc.description.none.fl_txt_mv The global invasion, and subsequent spread and evolution of weeds provides unique opportunities to address fundamental questions in evolutionary and invasion ecology. Amaranthus palmeri is a widespread glyphosate-resistant (GR) weed in the USA. Since 2015, GR populations of A. palmeri have been confirmed in South America, raising questions about introduction pathways and the importance of pre- vs. post-invasion evolution of GR traits. We used RAD-sequencing genotyping to characterize genetic structure of populations from Brazil, Argentina, Uruguay and the USA. We also quantified gene copy number of the glyphosate target, 5-enolpyruvyl-3-shikimate phosphate synthase (EPSPS), and the presence of an extrachromosomal circular DNA (eccDNA) replicon known to confer glyphosate resistance in USA populations. Populations in Brazil, Argentina and Uruguay were only weakly differentiated (pairwise FST ≤0.043) in comparison to USA populations (mean pairwise FST =0.161, range =0.068–0.258), suggesting a single major invasion event. However, elevated EPSPS copy number andthe EPSPS replicon were identified in all populations from Brazil and Uruguay, but only in a single Argentinean population. These observations are consistent with independent in situ evolution of glyphosate resistance in Argentina, followed by some limited recent migration of the eccDNA-based mechanism from Brazil to Argentina. Taken together, our results are consistent with an initial introduction of A. palmeri into South America sometime before the 1980s, and local evolution of GR in Argentina, followed by a secondary invasion of GR A. palmeri with the unique eccDNA-based mechanism from the USA into Brazil and Uruguay during the 2010s.
Fil: Gaines, Todd A. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
Fil: Slavov, Gancho T. Rothamsted Research, West Common, Harpenden, Hertfordshire, UK
Fil: Hughes, David. Rothamsted Research, West Common, Harpenden, Hertfordshire, UK
Fil: Küpper, Anita. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
Fil: Sparks, Crystal D. Department of Agricultural Biology, Colorado State University, Fort Collins, Colorado, USA
Fil: Oliva, Julian Hipólito del Corazón de María. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; Argentina
Fil: Vila-Aiub, Martin M. IFEVA - CONICET – Faculty of Agronomy, Department of Ecology, University of Buenos Aires (UBA), Buenos Aires, Argentina
Fil: García, M. Alejandro. Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental INIA La Estanzuela, Colonia, Uruguay
Fil: Merotto, Aldo. Department of Crop Science, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil
Fil: Neve, Paul. Plant & Environmental Sciences Department, University of Copenhagen, Tåstrup, Denmark
description The global invasion, and subsequent spread and evolution of weeds provides unique opportunities to address fundamental questions in evolutionary and invasion ecology. Amaranthus palmeri is a widespread glyphosate-resistant (GR) weed in the USA. Since 2015, GR populations of A. palmeri have been confirmed in South America, raising questions about introduction pathways and the importance of pre- vs. post-invasion evolution of GR traits. We used RAD-sequencing genotyping to characterize genetic structure of populations from Brazil, Argentina, Uruguay and the USA. We also quantified gene copy number of the glyphosate target, 5-enolpyruvyl-3-shikimate phosphate synthase (EPSPS), and the presence of an extrachromosomal circular DNA (eccDNA) replicon known to confer glyphosate resistance in USA populations. Populations in Brazil, Argentina and Uruguay were only weakly differentiated (pairwise FST ≤0.043) in comparison to USA populations (mean pairwise FST =0.161, range =0.068–0.258), suggesting a single major invasion event. However, elevated EPSPS copy number andthe EPSPS replicon were identified in all populations from Brazil and Uruguay, but only in a single Argentinean population. These observations are consistent with independent in situ evolution of glyphosate resistance in Argentina, followed by some limited recent migration of the eccDNA-based mechanism from Brazil to Argentina. Taken together, our results are consistent with an initial introduction of A. palmeri into South America sometime before the 1980s, and local evolution of GR in Argentina, followed by a secondary invasion of GR A. palmeri with the unique eccDNA-based mechanism from the USA into Brazil and Uruguay during the 2010s.
publishDate 2021
dc.date.none.fl_str_mv 2021-09-15
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/acceptedVersion
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info:ar-repo/semantics/articulo
format article
status_str acceptedVersion
dc.identifier.none.fl_str_mv http://pa.bibdigital.ucc.edu.ar/3957/1/A_Gaines_Slavov_Hughes_K%C3%BCpper_Sparks_Oliva_VilaAiub_Garc%C3%ADa_Merotto_Neve.pdf
url http://pa.bibdigital.ucc.edu.ar/3957/1/A_Gaines_Slavov_Hughes_K%C3%BCpper_Sparks_Oliva_VilaAiub_Garc%C3%ADa_Merotto_Neve.pdf
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv http://pa.bibdigital.ucc.edu.ar/3957/
info:eu-repo/semantics/altIdentifier/doi/DOI: 10.1111/mec.16221
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/4.0/deed.es
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0/deed.es
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Wiley Blackwell
publisher.none.fl_str_mv Wiley Blackwell
dc.source.none.fl_str_mv Gaines, Todd A. ORCID: https://orcid.org/0000-0003-1485-7665 <https://orcid.org/0000-0003-1485-7665>, Slavov, Gancho T. ORCID: https://orcid.org/0000-0001-8565-9098 <https://orcid.org/0000-0001-8565-9098>, Hughes, David, Küpper, Anita ORCID: https://orcid.org/0000-0001-5122-1514 <https://orcid.org/0000-0001-5122-1514>, Sparks, Crystal D. ORCID: https://orcid.org/0000-0002-6674-8447 <https://orcid.org/0000-0002-6674-8447>, Oliva, Julian Hipólito del Corazón de María, Vila-Aiub, Martin M. ORCID: https://orcid.org/0000-0003-2118-290X <https://orcid.org/0000-0003-2118-290X>, García, M. Alejandro, Merotto, Aldo ORCID: https://orcid.org/0000-0002-1581-0669 <https://orcid.org/0000-0002-1581-0669> and Neve, Paul ORCID: https://orcid.org/0000-0002-3136-5286 <https://orcid.org/0000-0002-3136-5286> (2021) Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America. Molecular Ecology (30). pp. 5360-5372. ISSN 0962-1083
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