Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae

Autores
Nibert, Max L.; Debat, Humberto Julio; Manny, Austin R.; Grigoriev, Igor V.; De Fine Licht, Henrik H.
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Fungi constituting the Entomophthora muscae species complex (members of subphylum Entomophthoromycotina, phylum Zoopagamycota) commonly kill their insect hosts and manipulate host behaviors in the process. In this study, we made use of public transcriptome data to identify and characterize eight new species of mitoviruses associated with several different E. muscae isolates. Mitoviruses are simple RNA viruses that replicate in host mitochondria and are frequently found in more phylogenetically apical fungi (members of subphylum Glomeromyoctina, phylum Mucoromycota, phylum Basidiomycota and phylum Ascomycota) as well as in plants. E. muscae is the first fungus from phylum Zoopagomycota, and thereby the most phylogenetically basal fungus, found to harbor mitoviruses to date. Multiple UGA (Trp) codons are found not only in each of the new mitovirus sequences from E. muscae but also in mitochondrial core-gene coding sequences newly assembled from E. muscae transcriptome data, suggesting that UGA (Trp) is not a rarely used codon in the mitochondria of this fungus. The presence of mitoviruses in these basal fungi has possible implications for the evolution of these viruses.
Instituto de Patología Vegetal
Fil: Nibert, Max L. Harvard Medical School. Department of Microbiology. Program in Virology; Estados Unidos
Fil:Debat, Humberto J. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Manny, Austin R. Harvard Medical School. Department of Microbiology. Program in Virology; Estados Unidos
Fil: Grigoriev, , Igor V. U.S. Department of Energy. Joint Genome Institute; Estados Unidos. University of California Berkeley. Department of Plant and Microbial Biology; Estados Unidos
Fil: De Fine Licht, Henrik H. University of Copenhagen. Department of Plant and Environmental Sciences; Dinamarca
Fuente
Viruses 11 (4) : 351. (April 2019)
Materia
Entomophthora
Fungi
Data Mining
Minería de Datos
Hongos
Database Mining
Fungal Virus
Mitochondrion
Mycovirus
Virus Discovery
Entomophthoromycotina
Mitovirus
Narnaviridae
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/5964
Acceder
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spelling Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscaeNibert, Max L.Debat, Humberto JulioManny, Austin R.Grigoriev, Igor V.De Fine Licht, Henrik H.EntomophthoraFungiData MiningMinería de DatosHongosDatabase MiningFungal VirusMitochondrionMycovirusVirus DiscoveryEntomophthoromycotinaMitovirusNarnaviridaeFungi constituting the Entomophthora muscae species complex (members of subphylum Entomophthoromycotina, phylum Zoopagamycota) commonly kill their insect hosts and manipulate host behaviors in the process. In this study, we made use of public transcriptome data to identify and characterize eight new species of mitoviruses associated with several different E. muscae isolates. Mitoviruses are simple RNA viruses that replicate in host mitochondria and are frequently found in more phylogenetically apical fungi (members of subphylum Glomeromyoctina, phylum Mucoromycota, phylum Basidiomycota and phylum Ascomycota) as well as in plants. E. muscae is the first fungus from phylum Zoopagomycota, and thereby the most phylogenetically basal fungus, found to harbor mitoviruses to date. Multiple UGA (Trp) codons are found not only in each of the new mitovirus sequences from E. muscae but also in mitochondrial core-gene coding sequences newly assembled from E. muscae transcriptome data, suggesting that UGA (Trp) is not a rarely used codon in the mitochondria of this fungus. The presence of mitoviruses in these basal fungi has possible implications for the evolution of these viruses.Instituto de Patología VegetalFil: Nibert, Max L. Harvard Medical School. Department of Microbiology. Program in Virology; Estados UnidosFil:Debat, Humberto J. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; ArgentinaFil: Manny, Austin R. Harvard Medical School. Department of Microbiology. Program in Virology; Estados UnidosFil: Grigoriev, , Igor V. U.S. Department of Energy. Joint Genome Institute; Estados Unidos. University of California Berkeley. Department of Plant and Microbial Biology; Estados UnidosFil: De Fine Licht, Henrik H. University of Copenhagen. Department of Plant and Environmental Sciences; DinamarcaMDPI2019-09-25T10:52:29Z2019-09-25T10:52:29Z2019-04-17info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://www.mdpi.com/1999-4915/11/4/351http://hdl.handle.net/20.500.12123/59641999-4915https://doi.org/10.3390/v11040351Viruses 11 (4) : 351. (April 2019)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-10-23T11:17:04Zoai:localhost:20.500.12123/5964instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-10-23 11:17:04.984INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
title Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
spellingShingle Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
Nibert, Max L.
Entomophthora
Fungi
Data Mining
Minería de Datos
Hongos
Database Mining
Fungal Virus
Mitochondrion
Mycovirus
Virus Discovery
Entomophthoromycotina
Mitovirus
Narnaviridae
title_short Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
title_full Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
title_fullStr Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
title_full_unstemmed Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
title_sort Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
dc.creator.none.fl_str_mv Nibert, Max L.
Debat, Humberto Julio
Manny, Austin R.
Grigoriev, Igor V.
De Fine Licht, Henrik H.
author Nibert, Max L.
author_facet Nibert, Max L.
Debat, Humberto Julio
Manny, Austin R.
Grigoriev, Igor V.
De Fine Licht, Henrik H.
author_role author
author2 Debat, Humberto Julio
Manny, Austin R.
Grigoriev, Igor V.
De Fine Licht, Henrik H.
author2_role author
author
author
author
dc.subject.none.fl_str_mv Entomophthora
Fungi
Data Mining
Minería de Datos
Hongos
Database Mining
Fungal Virus
Mitochondrion
Mycovirus
Virus Discovery
Entomophthoromycotina
Mitovirus
Narnaviridae
topic Entomophthora
Fungi
Data Mining
Minería de Datos
Hongos
Database Mining
Fungal Virus
Mitochondrion
Mycovirus
Virus Discovery
Entomophthoromycotina
Mitovirus
Narnaviridae
dc.description.none.fl_txt_mv Fungi constituting the Entomophthora muscae species complex (members of subphylum Entomophthoromycotina, phylum Zoopagamycota) commonly kill their insect hosts and manipulate host behaviors in the process. In this study, we made use of public transcriptome data to identify and characterize eight new species of mitoviruses associated with several different E. muscae isolates. Mitoviruses are simple RNA viruses that replicate in host mitochondria and are frequently found in more phylogenetically apical fungi (members of subphylum Glomeromyoctina, phylum Mucoromycota, phylum Basidiomycota and phylum Ascomycota) as well as in plants. E. muscae is the first fungus from phylum Zoopagomycota, and thereby the most phylogenetically basal fungus, found to harbor mitoviruses to date. Multiple UGA (Trp) codons are found not only in each of the new mitovirus sequences from E. muscae but also in mitochondrial core-gene coding sequences newly assembled from E. muscae transcriptome data, suggesting that UGA (Trp) is not a rarely used codon in the mitochondria of this fungus. The presence of mitoviruses in these basal fungi has possible implications for the evolution of these viruses.
Instituto de Patología Vegetal
Fil: Nibert, Max L. Harvard Medical School. Department of Microbiology. Program in Virology; Estados Unidos
Fil:Debat, Humberto J. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Manny, Austin R. Harvard Medical School. Department of Microbiology. Program in Virology; Estados Unidos
Fil: Grigoriev, , Igor V. U.S. Department of Energy. Joint Genome Institute; Estados Unidos. University of California Berkeley. Department of Plant and Microbial Biology; Estados Unidos
Fil: De Fine Licht, Henrik H. University of Copenhagen. Department of Plant and Environmental Sciences; Dinamarca
description Fungi constituting the Entomophthora muscae species complex (members of subphylum Entomophthoromycotina, phylum Zoopagamycota) commonly kill their insect hosts and manipulate host behaviors in the process. In this study, we made use of public transcriptome data to identify and characterize eight new species of mitoviruses associated with several different E. muscae isolates. Mitoviruses are simple RNA viruses that replicate in host mitochondria and are frequently found in more phylogenetically apical fungi (members of subphylum Glomeromyoctina, phylum Mucoromycota, phylum Basidiomycota and phylum Ascomycota) as well as in plants. E. muscae is the first fungus from phylum Zoopagomycota, and thereby the most phylogenetically basal fungus, found to harbor mitoviruses to date. Multiple UGA (Trp) codons are found not only in each of the new mitovirus sequences from E. muscae but also in mitochondrial core-gene coding sequences newly assembled from E. muscae transcriptome data, suggesting that UGA (Trp) is not a rarely used codon in the mitochondria of this fungus. The presence of mitoviruses in these basal fungi has possible implications for the evolution of these viruses.
publishDate 2019
dc.date.none.fl_str_mv 2019-09-25T10:52:29Z
2019-09-25T10:52:29Z
2019-04-17
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://www.mdpi.com/1999-4915/11/4/351
http://hdl.handle.net/20.500.12123/5964
1999-4915
https://doi.org/10.3390/v11040351
url https://www.mdpi.com/1999-4915/11/4/351
http://hdl.handle.net/20.500.12123/5964
https://doi.org/10.3390/v11040351
identifier_str_mv 1999-4915
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv Viruses 11 (4) : 351. (April 2019)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.982451

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