Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations

Autores
Pretini, Nicole; Vanzetti, Leonardo Sebastian; Terrile, Ignacio Ismael; Donaire, Guillermo Manuel; Gonzalez, Fernanda Gabriela
Año de publicación
2021
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Background: In breeding programs, the selection of cultivars with the highest yield potential consisted in the selection of the yield per se, which resulted in cultivars with higher grains per spike (GN) and occasionally increased grain weight (GW) (main numerical components of the yield). In this study, quantitative trait loci (QTL) for GW, GN and spike fertility traits related to GN determination were mapped using two doubled haploid (DH) populations (Baguette Premium 11 × BioINTA 2002 and Baguette 19 × BioINTA 2002). Results: In total 305 QTL were identified for 14 traits, out of which 12 QTL were identified in more than three environments and explained more than 10% of the phenotypic variation in at least one environment. Eight hotspot regions were detected on chromosomes 1A, 2B, 3A, 5A, 5B, 7A and 7B in which at least two major and stable QTL sheared confidence intervals. QTL on two of these regions (R5A.1 and R5A.2) have previously been described, but the other six regions are novel. Conclusions: Based on the pleiotropic analysis within a robust physiological model we conclude that two hotspot genomic regions (R5A.1 and R5A.2) together with the QGW.perg-6B are of high relevance to be used in marker assisted selection in order to improve the spike yield potential. All the QTL identified for the spike related traits are the first step to search for their candidate genes, which will allow their better manipulation in the future.
EEA Marcos Juárez
Fil: Pretini, Nicole. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina
Fil: Pretini, Nicole. Universidad Nacional del Noroeste de la Provincia de Buenos Aires (UNNOBA). Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina.
Fil: Vanzetti, Leonardo Sebastian. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: Vanzetti, Leonardo Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Terrile, Ignacio Ismael. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino. Departamento de Trigo; Argentina
Fil: Donaire, Guillermo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juarez; Argentina.
Fil: González, Fernanda Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina.
Fil: González, Fernanda Gabriela. Universidad Nacional del Noroeste de la Provincia de Buenos Aires (UNNOBA). Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina
Fil: González, Fernanda Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina.
Fuente
BMC Plant Biology 21 : Article number: 353 (2021)
Materia
Trigo
Triticum aestivum
Loci de Rasgos Cuantitativos
Haploidia
Wheat
Quantitative Trait Loci
Haploidy
LRC (loci de rasgos cuantitativos)
QTL (quantitative trait loci)
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/9903
Acceder
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oai_identifier_str oai:localhost:20.500.12123/9903
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populationsPretini, NicoleVanzetti, Leonardo SebastianTerrile, Ignacio IsmaelDonaire, Guillermo ManuelGonzalez, Fernanda GabrielaTrigoTriticum aestivumLoci de Rasgos CuantitativosHaploidiaWheatQuantitative Trait LociHaploidyLRC (loci de rasgos cuantitativos)QTL (quantitative trait loci)Background: In breeding programs, the selection of cultivars with the highest yield potential consisted in the selection of the yield per se, which resulted in cultivars with higher grains per spike (GN) and occasionally increased grain weight (GW) (main numerical components of the yield). In this study, quantitative trait loci (QTL) for GW, GN and spike fertility traits related to GN determination were mapped using two doubled haploid (DH) populations (Baguette Premium 11 × BioINTA 2002 and Baguette 19 × BioINTA 2002). Results: In total 305 QTL were identified for 14 traits, out of which 12 QTL were identified in more than three environments and explained more than 10% of the phenotypic variation in at least one environment. Eight hotspot regions were detected on chromosomes 1A, 2B, 3A, 5A, 5B, 7A and 7B in which at least two major and stable QTL sheared confidence intervals. QTL on two of these regions (R5A.1 and R5A.2) have previously been described, but the other six regions are novel. Conclusions: Based on the pleiotropic analysis within a robust physiological model we conclude that two hotspot genomic regions (R5A.1 and R5A.2) together with the QGW.perg-6B are of high relevance to be used in marker assisted selection in order to improve the spike yield potential. All the QTL identified for the spike related traits are the first step to search for their candidate genes, which will allow their better manipulation in the future.EEA Marcos JuárezFil: Pretini, Nicole. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; ArgentinaFil: Pretini, Nicole. Universidad Nacional del Noroeste de la Provincia de Buenos Aires (UNNOBA). Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina.Fil: Vanzetti, Leonardo Sebastian. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; ArgentinaFil: Vanzetti, Leonardo Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Terrile, Ignacio Ismael. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino. Departamento de Trigo; ArgentinaFil: Donaire, Guillermo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juarez; Argentina.Fil: González, Fernanda Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina.Fil: González, Fernanda Gabriela. Universidad Nacional del Noroeste de la Provincia de Buenos Aires (UNNOBA). Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; ArgentinaFil: González, Fernanda Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina.BMC2021-07-28T11:34:01Z2021-07-28T11:34:01Z2021-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/9903https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03061-y1471-2229https://doi.org/10.1186/s12870-021-03061-yBMC Plant Biology 21 : Article number: 353 (2021)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repograntAgreement/INTA/PNCYO-1127042/AR./Bases ecofisiológicas para el mejoramiento genético y la calidad diferenciada de cereales y oleaginosas.info:eu-repograntAgreement/INTA/2019-PE-E6-I126-001/2019-PE-E6-I126-001/AR./Mejoramiento genético de trigo pan (Triticum aestivum L.) y trigo candeal (Triticum turgidum ssp. durum Desf.)info:eu-repograntAgreement/INTA/2019-PE-E6-I114-001/2019-PE-E6-I114-001/AR./Caracterización de la diversidad genética de plantas, animales y microorganismos mediante herramientas de genómica aplicada.info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:45:17Zoai:localhost:20.500.12123/9903instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:45:17.831INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
title Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
spellingShingle Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
Pretini, Nicole
Trigo
Triticum aestivum
Loci de Rasgos Cuantitativos
Haploidia
Wheat
Quantitative Trait Loci
Haploidy
LRC (loci de rasgos cuantitativos)
QTL (quantitative trait loci)
title_short Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
title_full Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
title_fullStr Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
title_full_unstemmed Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
title_sort Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations
dc.creator.none.fl_str_mv Pretini, Nicole
Vanzetti, Leonardo Sebastian
Terrile, Ignacio Ismael
Donaire, Guillermo Manuel
Gonzalez, Fernanda Gabriela
author Pretini, Nicole
author_facet Pretini, Nicole
Vanzetti, Leonardo Sebastian
Terrile, Ignacio Ismael
Donaire, Guillermo Manuel
Gonzalez, Fernanda Gabriela
author_role author
author2 Vanzetti, Leonardo Sebastian
Terrile, Ignacio Ismael
Donaire, Guillermo Manuel
Gonzalez, Fernanda Gabriela
author2_role author
author
author
author
dc.subject.none.fl_str_mv Trigo
Triticum aestivum
Loci de Rasgos Cuantitativos
Haploidia
Wheat
Quantitative Trait Loci
Haploidy
LRC (loci de rasgos cuantitativos)
QTL (quantitative trait loci)
topic Trigo
Triticum aestivum
Loci de Rasgos Cuantitativos
Haploidia
Wheat
Quantitative Trait Loci
Haploidy
LRC (loci de rasgos cuantitativos)
QTL (quantitative trait loci)
dc.description.none.fl_txt_mv Background: In breeding programs, the selection of cultivars with the highest yield potential consisted in the selection of the yield per se, which resulted in cultivars with higher grains per spike (GN) and occasionally increased grain weight (GW) (main numerical components of the yield). In this study, quantitative trait loci (QTL) for GW, GN and spike fertility traits related to GN determination were mapped using two doubled haploid (DH) populations (Baguette Premium 11 × BioINTA 2002 and Baguette 19 × BioINTA 2002). Results: In total 305 QTL were identified for 14 traits, out of which 12 QTL were identified in more than three environments and explained more than 10% of the phenotypic variation in at least one environment. Eight hotspot regions were detected on chromosomes 1A, 2B, 3A, 5A, 5B, 7A and 7B in which at least two major and stable QTL sheared confidence intervals. QTL on two of these regions (R5A.1 and R5A.2) have previously been described, but the other six regions are novel. Conclusions: Based on the pleiotropic analysis within a robust physiological model we conclude that two hotspot genomic regions (R5A.1 and R5A.2) together with the QGW.perg-6B are of high relevance to be used in marker assisted selection in order to improve the spike yield potential. All the QTL identified for the spike related traits are the first step to search for their candidate genes, which will allow their better manipulation in the future.
EEA Marcos Juárez
Fil: Pretini, Nicole. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina
Fil: Pretini, Nicole. Universidad Nacional del Noroeste de la Provincia de Buenos Aires (UNNOBA). Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina.
Fil: Vanzetti, Leonardo Sebastian. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: Vanzetti, Leonardo Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Terrile, Ignacio Ismael. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino. Departamento de Trigo; Argentina
Fil: Donaire, Guillermo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juarez; Argentina.
Fil: González, Fernanda Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina.
Fil: González, Fernanda Gabriela. Universidad Nacional del Noroeste de la Provincia de Buenos Aires (UNNOBA). Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires; Argentina
Fil: González, Fernanda Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina.
description Background: In breeding programs, the selection of cultivars with the highest yield potential consisted in the selection of the yield per se, which resulted in cultivars with higher grains per spike (GN) and occasionally increased grain weight (GW) (main numerical components of the yield). In this study, quantitative trait loci (QTL) for GW, GN and spike fertility traits related to GN determination were mapped using two doubled haploid (DH) populations (Baguette Premium 11 × BioINTA 2002 and Baguette 19 × BioINTA 2002). Results: In total 305 QTL were identified for 14 traits, out of which 12 QTL were identified in more than three environments and explained more than 10% of the phenotypic variation in at least one environment. Eight hotspot regions were detected on chromosomes 1A, 2B, 3A, 5A, 5B, 7A and 7B in which at least two major and stable QTL sheared confidence intervals. QTL on two of these regions (R5A.1 and R5A.2) have previously been described, but the other six regions are novel. Conclusions: Based on the pleiotropic analysis within a robust physiological model we conclude that two hotspot genomic regions (R5A.1 and R5A.2) together with the QGW.perg-6B are of high relevance to be used in marker assisted selection in order to improve the spike yield potential. All the QTL identified for the spike related traits are the first step to search for their candidate genes, which will allow their better manipulation in the future.
publishDate 2021
dc.date.none.fl_str_mv 2021-07-28T11:34:01Z
2021-07-28T11:34:01Z
2021-07
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/9903
https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03061-y
1471-2229
https://doi.org/10.1186/s12870-021-03061-y
url http://hdl.handle.net/20.500.12123/9903
https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03061-y
https://doi.org/10.1186/s12870-021-03061-y
identifier_str_mv 1471-2229
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repograntAgreement/INTA/PNCYO-1127042/AR./Bases ecofisiológicas para el mejoramiento genético y la calidad diferenciada de cereales y oleaginosas.
info:eu-repograntAgreement/INTA/2019-PE-E6-I126-001/2019-PE-E6-I126-001/AR./Mejoramiento genético de trigo pan (Triticum aestivum L.) y trigo candeal (Triticum turgidum ssp. durum Desf.)
info:eu-repograntAgreement/INTA/2019-PE-E6-I114-001/2019-PE-E6-I114-001/AR./Caracterización de la diversidad genética de plantas, animales y microorganismos mediante herramientas de genómica aplicada.
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BMC
publisher.none.fl_str_mv BMC
dc.source.none.fl_str_mv BMC Plant Biology 21 : Article number: 353 (2021)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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