Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species

Autores
Acuña, Cintia Vanesa; Villalba, Pamela Victoria; Hopp, Horacio Esteban; Marcucci Poltri, Susana Noemi
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
AIM OF STUDY: To analyze the feasibility of extrapolating conclusions on wood quality genetic control between different Eucalyptus species, particularly from species with better genomic information, to those less characterized. For this purpose, the first step is to analyze the conservation and cross-transferability of microsatellites markers (SSRs) located in candidate genes. AREA OF STUDY: Eucalyptus species implanted in Argentina coming from different Australian origins. MATERIALS AND METHODS: Twelve validated and polymorphic SSRs in candidate genes (SSR-CGs) for wood quality in E. globulus were selected for cross species amplification in six species: E. grandis, E. saligna, E. dunnii, E. viminalis, E. camaldulensis and E. tereticornis. MAIN RESULTS: High cross-species transferability (92% to 100%) was found for the 12 polymorphic SSRs detected in E. globulus. These markers revealed allelic diversity in nine important candidate genes: cinnamoyl CoA reductase (CCR), cellulose synthase 3 (CesA3), the transcription factor LIM1, homocysteine S-methyltransferase (HMT), shikimate kinase (SK), xyloglucan endotransglycosylase 2 (XTH2), glutathione S-transferase (GST), glutamate decarboxylase (GAD) and peroxidase (PER). RESEARCH HIGHLIGHTS: The markers described are potentially suitable for comparative QTL mapping, molecular marker assisted breeding (MAB) and for population genetic studies across different species within the subgenus Symphyomyrtus.
Instituto de Biotecnología
Fil: Acuña, Cintia Vanesa. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Villalba, Pamela Victoria. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Hopp, Horacio Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Hopp, Horacio Esteban. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina
Fil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fuente
Forest Systems 23 (3) : 506-512. (2014)
Materia
Eucalyptus
Microsatélites
Marcadores Genéticos
Variedades
Cruzamiento
Microsatellites
Genetic Markers
Varieties
Cross-breeding
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/14432
Acceder
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oai_identifier_str oai:localhost:20.500.12123/14432
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network_name_str INTA Digital (INTA)
spelling Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus speciesAcuña, Cintia VanesaVillalba, Pamela VictoriaHopp, Horacio EstebanMarcucci Poltri, Susana NoemiEucalyptusMicrosatélitesMarcadores GenéticosVariedadesCruzamientoMicrosatellitesGenetic MarkersVarietiesCross-breedingAIM OF STUDY: To analyze the feasibility of extrapolating conclusions on wood quality genetic control between different Eucalyptus species, particularly from species with better genomic information, to those less characterized. For this purpose, the first step is to analyze the conservation and cross-transferability of microsatellites markers (SSRs) located in candidate genes. AREA OF STUDY: Eucalyptus species implanted in Argentina coming from different Australian origins. MATERIALS AND METHODS: Twelve validated and polymorphic SSRs in candidate genes (SSR-CGs) for wood quality in E. globulus were selected for cross species amplification in six species: E. grandis, E. saligna, E. dunnii, E. viminalis, E. camaldulensis and E. tereticornis. MAIN RESULTS: High cross-species transferability (92% to 100%) was found for the 12 polymorphic SSRs detected in E. globulus. These markers revealed allelic diversity in nine important candidate genes: cinnamoyl CoA reductase (CCR), cellulose synthase 3 (CesA3), the transcription factor LIM1, homocysteine S-methyltransferase (HMT), shikimate kinase (SK), xyloglucan endotransglycosylase 2 (XTH2), glutathione S-transferase (GST), glutamate decarboxylase (GAD) and peroxidase (PER). RESEARCH HIGHLIGHTS: The markers described are potentially suitable for comparative QTL mapping, molecular marker assisted breeding (MAB) and for population genetic studies across different species within the subgenus Symphyomyrtus.Instituto de BiotecnologíaFil: Acuña, Cintia Vanesa. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Villalba, Pamela Victoria. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Hopp, Horacio Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Hopp, Horacio Esteban. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (España)2023-04-10T15:00:30Z2023-04-10T15:00:30Z2014info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/14432https://revistas.inia.es/index.php/fs/article/view/52792171-50682171-9845https://doi.org/10.5424/fs/2014233-05279Forest Systems 23 (3) : 506-512. (2014)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-10-16T09:31:09Zoai:localhost:20.500.12123/14432instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-10-16 09:31:09.728INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
title Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
spellingShingle Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
Acuña, Cintia Vanesa
Eucalyptus
Microsatélites
Marcadores Genéticos
Variedades
Cruzamiento
Microsatellites
Genetic Markers
Varieties
Cross-breeding
title_short Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
title_full Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
title_fullStr Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
title_full_unstemmed Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
title_sort Transferability of microsatellite markers located in candidate genes for wood properties between Eucalyptus species
dc.creator.none.fl_str_mv Acuña, Cintia Vanesa
Villalba, Pamela Victoria
Hopp, Horacio Esteban
Marcucci Poltri, Susana Noemi
author Acuña, Cintia Vanesa
author_facet Acuña, Cintia Vanesa
Villalba, Pamela Victoria
Hopp, Horacio Esteban
Marcucci Poltri, Susana Noemi
author_role author
author2 Villalba, Pamela Victoria
Hopp, Horacio Esteban
Marcucci Poltri, Susana Noemi
author2_role author
author
author
dc.subject.none.fl_str_mv Eucalyptus
Microsatélites
Marcadores Genéticos
Variedades
Cruzamiento
Microsatellites
Genetic Markers
Varieties
Cross-breeding
topic Eucalyptus
Microsatélites
Marcadores Genéticos
Variedades
Cruzamiento
Microsatellites
Genetic Markers
Varieties
Cross-breeding
dc.description.none.fl_txt_mv AIM OF STUDY: To analyze the feasibility of extrapolating conclusions on wood quality genetic control between different Eucalyptus species, particularly from species with better genomic information, to those less characterized. For this purpose, the first step is to analyze the conservation and cross-transferability of microsatellites markers (SSRs) located in candidate genes. AREA OF STUDY: Eucalyptus species implanted in Argentina coming from different Australian origins. MATERIALS AND METHODS: Twelve validated and polymorphic SSRs in candidate genes (SSR-CGs) for wood quality in E. globulus were selected for cross species amplification in six species: E. grandis, E. saligna, E. dunnii, E. viminalis, E. camaldulensis and E. tereticornis. MAIN RESULTS: High cross-species transferability (92% to 100%) was found for the 12 polymorphic SSRs detected in E. globulus. These markers revealed allelic diversity in nine important candidate genes: cinnamoyl CoA reductase (CCR), cellulose synthase 3 (CesA3), the transcription factor LIM1, homocysteine S-methyltransferase (HMT), shikimate kinase (SK), xyloglucan endotransglycosylase 2 (XTH2), glutathione S-transferase (GST), glutamate decarboxylase (GAD) and peroxidase (PER). RESEARCH HIGHLIGHTS: The markers described are potentially suitable for comparative QTL mapping, molecular marker assisted breeding (MAB) and for population genetic studies across different species within the subgenus Symphyomyrtus.
Instituto de Biotecnología
Fil: Acuña, Cintia Vanesa. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Villalba, Pamela Victoria. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Hopp, Horacio Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Hopp, Horacio Esteban. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina
Fil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
description AIM OF STUDY: To analyze the feasibility of extrapolating conclusions on wood quality genetic control between different Eucalyptus species, particularly from species with better genomic information, to those less characterized. For this purpose, the first step is to analyze the conservation and cross-transferability of microsatellites markers (SSRs) located in candidate genes. AREA OF STUDY: Eucalyptus species implanted in Argentina coming from different Australian origins. MATERIALS AND METHODS: Twelve validated and polymorphic SSRs in candidate genes (SSR-CGs) for wood quality in E. globulus were selected for cross species amplification in six species: E. grandis, E. saligna, E. dunnii, E. viminalis, E. camaldulensis and E. tereticornis. MAIN RESULTS: High cross-species transferability (92% to 100%) was found for the 12 polymorphic SSRs detected in E. globulus. These markers revealed allelic diversity in nine important candidate genes: cinnamoyl CoA reductase (CCR), cellulose synthase 3 (CesA3), the transcription factor LIM1, homocysteine S-methyltransferase (HMT), shikimate kinase (SK), xyloglucan endotransglycosylase 2 (XTH2), glutathione S-transferase (GST), glutamate decarboxylase (GAD) and peroxidase (PER). RESEARCH HIGHLIGHTS: The markers described are potentially suitable for comparative QTL mapping, molecular marker assisted breeding (MAB) and for population genetic studies across different species within the subgenus Symphyomyrtus.
publishDate 2014
dc.date.none.fl_str_mv 2014
2023-04-10T15:00:30Z
2023-04-10T15:00:30Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/14432
https://revistas.inia.es/index.php/fs/article/view/5279
2171-5068
2171-9845
https://doi.org/10.5424/fs/2014233-05279
url http://hdl.handle.net/20.500.12123/14432
https://revistas.inia.es/index.php/fs/article/view/5279
https://doi.org/10.5424/fs/2014233-05279
identifier_str_mv 2171-5068
2171-9845
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (España)
publisher.none.fl_str_mv Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (España)
dc.source.none.fl_str_mv Forest Systems 23 (3) : 506-512. (2014)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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