Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species

Autores
Pomponio, Maria Florencia; Acuña, Cintia Vanesa; Petreath, Vivien; Lopez Lauenstein, Diego; Marcucci Poltri, Susana Noemi; Torales, Susana Leonor
Año de publicación
2015
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Aim of study: The aim of the study was to characterize functional microsatellite markers in Prosopis alba and examine the transferability to species from the Prosopis genus. Area of the study: samples were obtained from natural populations of Argentina. Material and Methods: Eleven SSR functional markers related to stress and metabolism were amplified in a sample of 152 genotypes from P. alba, P. denudans, P. hassleri P. chilensis, P. flexuosa, and interspecific hybrids. Main results: In P. alba, the PIC average value was 0.36; and 6 out of the 11 primers showed high values of polymorphism ranging from 0.40 to 0.71. The cross-species transferability was high with high percentages of polymorphic loci. Research highlights: The SSR markers developed in P.alba were easily transferred to other Prosopis species which did not have functional markers.
Instituto de Recursos Biológicos
Fil: Pomponio, Maria Florencia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina
Fil: Acuña, Cintia Vanesa. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Petreath, Vivien. Universidad Nacional de Patagonia San Juan Bosco. Sede Comodoro Rivadavia; Argentina
Fil: Lopez Lauenstein, Diego. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina
Fil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Torales, Susana Leonor. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina
Fuente
Forest Systems 24 (2) : eRC04 (2015)
Materia
Prosopis alba
Marcadores Genéticos
Prosopis
Variación Genética
Microsatélites
Genetic Markers
Genetic Variation
Microsatellites
Marcadores SSR
SSR Markers
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/11356
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network_name_str INTA Digital (INTA)
spelling Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis speciesPomponio, Maria FlorenciaAcuña, Cintia VanesaPetreath, VivienLopez Lauenstein, DiegoMarcucci Poltri, Susana NoemiTorales, Susana LeonorProsopis albaMarcadores GenéticosProsopisVariación GenéticaMicrosatélitesGenetic MarkersGenetic VariationMicrosatellitesMarcadores SSRSSR MarkersAim of study: The aim of the study was to characterize functional microsatellite markers in Prosopis alba and examine the transferability to species from the Prosopis genus. Area of the study: samples were obtained from natural populations of Argentina. Material and Methods: Eleven SSR functional markers related to stress and metabolism were amplified in a sample of 152 genotypes from P. alba, P. denudans, P. hassleri P. chilensis, P. flexuosa, and interspecific hybrids. Main results: In P. alba, the PIC average value was 0.36; and 6 out of the 11 primers showed high values of polymorphism ranging from 0.40 to 0.71. The cross-species transferability was high with high percentages of polymorphic loci. Research highlights: The SSR markers developed in P.alba were easily transferred to other Prosopis species which did not have functional markers.Instituto de Recursos BiológicosFil: Pomponio, Maria Florencia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; ArgentinaFil: Acuña, Cintia Vanesa. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Petreath, Vivien. Universidad Nacional de Patagonia San Juan Bosco. Sede Comodoro Rivadavia; ArgentinaFil: Lopez Lauenstein, Diego. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; ArgentinaFil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Torales, Susana Leonor. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; ArgentinaInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (España)2022-03-09T16:16:24Z2022-03-09T16:16:24Z2015info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/11356https://revistas.inia.es/index.php/fs/article/view/71882171-98452171-5068https://doi.org/10.5424/fs/2015242-07188Forest Systems 24 (2) : eRC04 (2015)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repograntAgreement/INTA/PNBIO-1131044/AR./Genómica aplicada a estudios de ecología molecular y diversidad genética.info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-04T09:49:17Zoai:localhost:20.500.12123/11356instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:49:17.744INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
title Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
spellingShingle Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
Pomponio, Maria Florencia
Prosopis alba
Marcadores Genéticos
Prosopis
Variación Genética
Microsatélites
Genetic Markers
Genetic Variation
Microsatellites
Marcadores SSR
SSR Markers
title_short Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
title_full Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
title_fullStr Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
title_full_unstemmed Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
title_sort Characterization of functional SSR markers in Prosopis alba and their transferability across Prosopis species
dc.creator.none.fl_str_mv Pomponio, Maria Florencia
Acuña, Cintia Vanesa
Petreath, Vivien
Lopez Lauenstein, Diego
Marcucci Poltri, Susana Noemi
Torales, Susana Leonor
author Pomponio, Maria Florencia
author_facet Pomponio, Maria Florencia
Acuña, Cintia Vanesa
Petreath, Vivien
Lopez Lauenstein, Diego
Marcucci Poltri, Susana Noemi
Torales, Susana Leonor
author_role author
author2 Acuña, Cintia Vanesa
Petreath, Vivien
Lopez Lauenstein, Diego
Marcucci Poltri, Susana Noemi
Torales, Susana Leonor
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv Prosopis alba
Marcadores Genéticos
Prosopis
Variación Genética
Microsatélites
Genetic Markers
Genetic Variation
Microsatellites
Marcadores SSR
SSR Markers
topic Prosopis alba
Marcadores Genéticos
Prosopis
Variación Genética
Microsatélites
Genetic Markers
Genetic Variation
Microsatellites
Marcadores SSR
SSR Markers
dc.description.none.fl_txt_mv Aim of study: The aim of the study was to characterize functional microsatellite markers in Prosopis alba and examine the transferability to species from the Prosopis genus. Area of the study: samples were obtained from natural populations of Argentina. Material and Methods: Eleven SSR functional markers related to stress and metabolism were amplified in a sample of 152 genotypes from P. alba, P. denudans, P. hassleri P. chilensis, P. flexuosa, and interspecific hybrids. Main results: In P. alba, the PIC average value was 0.36; and 6 out of the 11 primers showed high values of polymorphism ranging from 0.40 to 0.71. The cross-species transferability was high with high percentages of polymorphic loci. Research highlights: The SSR markers developed in P.alba were easily transferred to other Prosopis species which did not have functional markers.
Instituto de Recursos Biológicos
Fil: Pomponio, Maria Florencia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina
Fil: Acuña, Cintia Vanesa. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Petreath, Vivien. Universidad Nacional de Patagonia San Juan Bosco. Sede Comodoro Rivadavia; Argentina
Fil: Lopez Lauenstein, Diego. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina
Fil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Torales, Susana Leonor. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina
description Aim of study: The aim of the study was to characterize functional microsatellite markers in Prosopis alba and examine the transferability to species from the Prosopis genus. Area of the study: samples were obtained from natural populations of Argentina. Material and Methods: Eleven SSR functional markers related to stress and metabolism were amplified in a sample of 152 genotypes from P. alba, P. denudans, P. hassleri P. chilensis, P. flexuosa, and interspecific hybrids. Main results: In P. alba, the PIC average value was 0.36; and 6 out of the 11 primers showed high values of polymorphism ranging from 0.40 to 0.71. The cross-species transferability was high with high percentages of polymorphic loci. Research highlights: The SSR markers developed in P.alba were easily transferred to other Prosopis species which did not have functional markers.
publishDate 2015
dc.date.none.fl_str_mv 2015
2022-03-09T16:16:24Z
2022-03-09T16:16:24Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/11356
https://revistas.inia.es/index.php/fs/article/view/7188
2171-9845
2171-5068
https://doi.org/10.5424/fs/2015242-07188
url http://hdl.handle.net/20.500.12123/11356
https://revistas.inia.es/index.php/fs/article/view/7188
https://doi.org/10.5424/fs/2015242-07188
identifier_str_mv 2171-9845
2171-5068
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repograntAgreement/INTA/PNBIO-1131044/AR./Genómica aplicada a estudios de ecología molecular y diversidad genética.
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (España)
publisher.none.fl_str_mv Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (España)
dc.source.none.fl_str_mv Forest Systems 24 (2) : eRC04 (2015)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.623145

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