Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba

Autores
Belaj, Angjelina; Ninot, Antònia; Gómez-Gálvez, Francisco J.; El Riachy, Milad; Gurbuz-Veral, Melek; Torres, Myriam Mariela; Lazaj, Adhurim; Klepo, Tatjana; Paz, Sergio; Ugarte, Javier; Baldoni, Luciana; Lorite, Ignacio J.; Šatović, Zlatko; de la Rosa, Raúl
Año de publicación
2022
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.
EEA San Juan
Fil: Belaj, Angjelina. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
Fil: Ninot, Antònia . IRTA; España
Fil: Gómez-Gálvez, Francisco J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
Fil: El Riachy, Milad. LARI. Department of Olive and Olive Oil; Líbano
Fil: Gurbuz-Veral, Melek. Olive Research Institute. Department of Breeding and Genetics; Turquía
Fil: Torres, Myriam Mariela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria San Juan; Argentina.
Fil: Torres, Myriam Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Lazaj, Adhurim. Qendra e Transferimit te Teknologjise Bujqesore; Albania
Fil: Klepo, Tatjana.Croatian Agency for Agriculture and Food. Center of Pomology; Croacia
Fil: Paz, Sergio. Servicio de Transferencia de Tecnología Conselleria de Agricultura, Desarrollo Rural, Emergencia Climática y Transición Ecológica; España
Fil: Ugarte, Javier. Gobierno de La Rioja. Servicio de Investigación Agraria y Sanidad Vegetal; España
Fil: Baldoni, Luciana. National Research Council. Institute of Biosciences and Bioresources; Italia
Fil: Lorite, Ignacio J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
Fil: Šatović, Zlatko .University of Zagreb. Department of Seed Science and Technology, Faculty of Agriculture; Croacia
Fil: Šatović, Zlatko. Centre of Excellence for Biodiversity and Molecular Plant Breeding (CoE CroP-BioDiv); Croacia
Fil: de la Rosa, Raúl . Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
Fuente
Plants 11 (921) : 1-24 (marzo 2022)
Materia
Olea europaea
Germoplasma
Diversidad Genética (como Recurso)
Germplasm
Genetic Diversity (as Resource)
Olivo
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/11544
Acceder
id INTADig_23ff650508547e6da1dc9ab59a8a783c
oai_identifier_str oai:localhost:20.500.12123/11544
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of CórdobaBelaj, AngjelinaNinot, AntòniaGómez-Gálvez, Francisco J.El Riachy, MiladGurbuz-Veral, MelekTorres, Myriam MarielaLazaj, AdhurimKlepo, TatjanaPaz, SergioUgarte, JavierBaldoni, LucianaLorite, Ignacio J.Šatović, Zlatkode la Rosa, RaúlOlea europaeaGermoplasmaDiversidad Genética (como Recurso)GermplasmGenetic Diversity (as Resource)OlivoOlive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.EEA San JuanFil: Belaj, Angjelina. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; EspañaFil: Ninot, Antònia . IRTA; EspañaFil: Gómez-Gálvez, Francisco J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; EspañaFil: El Riachy, Milad. LARI. Department of Olive and Olive Oil; LíbanoFil: Gurbuz-Veral, Melek. Olive Research Institute. Department of Breeding and Genetics; TurquíaFil: Torres, Myriam Mariela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria San Juan; Argentina.Fil: Torres, Myriam Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Lazaj, Adhurim. Qendra e Transferimit te Teknologjise Bujqesore; AlbaniaFil: Klepo, Tatjana.Croatian Agency for Agriculture and Food. Center of Pomology; CroaciaFil: Paz, Sergio. Servicio de Transferencia de Tecnología Conselleria de Agricultura, Desarrollo Rural, Emergencia Climática y Transición Ecológica; EspañaFil: Ugarte, Javier. Gobierno de La Rioja. Servicio de Investigación Agraria y Sanidad Vegetal; EspañaFil: Baldoni, Luciana. National Research Council. Institute of Biosciences and Bioresources; ItaliaFil: Lorite, Ignacio J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; EspañaFil: Šatović, Zlatko .University of Zagreb. Department of Seed Science and Technology, Faculty of Agriculture; CroaciaFil: Šatović, Zlatko. Centre of Excellence for Biodiversity and Molecular Plant Breeding (CoE CroP-BioDiv); CroaciaFil: de la Rosa, Raúl . Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; EspañaMDPI2022-04-04T16:09:42Z2022-04-04T16:09:42Z2022-03-29info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/11544https://www.mdpi.com/2223-7747/11/7/9212223-7747https://doi.org/10.3390/plants11070921Plants 11 (921) : 1-24 (marzo 2022)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-10-23T11:17:54Zoai:localhost:20.500.12123/11544instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-10-23 11:17:55.134INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
spellingShingle Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
Belaj, Angjelina
Olea europaea
Germoplasma
Diversidad Genética (como Recurso)
Germplasm
Genetic Diversity (as Resource)
Olivo
title_short Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_full Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_fullStr Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_full_unstemmed Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_sort Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
dc.creator.none.fl_str_mv Belaj, Angjelina
Ninot, Antònia
Gómez-Gálvez, Francisco J.
El Riachy, Milad
Gurbuz-Veral, Melek
Torres, Myriam Mariela
Lazaj, Adhurim
Klepo, Tatjana
Paz, Sergio
Ugarte, Javier
Baldoni, Luciana
Lorite, Ignacio J.
Šatović, Zlatko
de la Rosa, Raúl
author Belaj, Angjelina
author_facet Belaj, Angjelina
Ninot, Antònia
Gómez-Gálvez, Francisco J.
El Riachy, Milad
Gurbuz-Veral, Melek
Torres, Myriam Mariela
Lazaj, Adhurim
Klepo, Tatjana
Paz, Sergio
Ugarte, Javier
Baldoni, Luciana
Lorite, Ignacio J.
Šatović, Zlatko
de la Rosa, Raúl
author_role author
author2 Ninot, Antònia
Gómez-Gálvez, Francisco J.
El Riachy, Milad
Gurbuz-Veral, Melek
Torres, Myriam Mariela
Lazaj, Adhurim
Klepo, Tatjana
Paz, Sergio
Ugarte, Javier
Baldoni, Luciana
Lorite, Ignacio J.
Šatović, Zlatko
de la Rosa, Raúl
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Olea europaea
Germoplasma
Diversidad Genética (como Recurso)
Germplasm
Genetic Diversity (as Resource)
Olivo
topic Olea europaea
Germoplasma
Diversidad Genética (como Recurso)
Germplasm
Genetic Diversity (as Resource)
Olivo
dc.description.none.fl_txt_mv Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.
EEA San Juan
Fil: Belaj, Angjelina. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
Fil: Ninot, Antònia . IRTA; España
Fil: Gómez-Gálvez, Francisco J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
Fil: El Riachy, Milad. LARI. Department of Olive and Olive Oil; Líbano
Fil: Gurbuz-Veral, Melek. Olive Research Institute. Department of Breeding and Genetics; Turquía
Fil: Torres, Myriam Mariela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria San Juan; Argentina.
Fil: Torres, Myriam Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Lazaj, Adhurim. Qendra e Transferimit te Teknologjise Bujqesore; Albania
Fil: Klepo, Tatjana.Croatian Agency for Agriculture and Food. Center of Pomology; Croacia
Fil: Paz, Sergio. Servicio de Transferencia de Tecnología Conselleria de Agricultura, Desarrollo Rural, Emergencia Climática y Transición Ecológica; España
Fil: Ugarte, Javier. Gobierno de La Rioja. Servicio de Investigación Agraria y Sanidad Vegetal; España
Fil: Baldoni, Luciana. National Research Council. Institute of Biosciences and Bioresources; Italia
Fil: Lorite, Ignacio J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
Fil: Šatović, Zlatko .University of Zagreb. Department of Seed Science and Technology, Faculty of Agriculture; Croacia
Fil: Šatović, Zlatko. Centre of Excellence for Biodiversity and Molecular Plant Breeding (CoE CroP-BioDiv); Croacia
Fil: de la Rosa, Raúl . Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España
description Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.
publishDate 2022
dc.date.none.fl_str_mv 2022-04-04T16:09:42Z
2022-04-04T16:09:42Z
2022-03-29
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/11544
https://www.mdpi.com/2223-7747/11/7/921
2223-7747
https://doi.org/10.3390/plants11070921
url http://hdl.handle.net/20.500.12123/11544
https://www.mdpi.com/2223-7747/11/7/921
https://doi.org/10.3390/plants11070921
identifier_str_mv 2223-7747
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv Plants 11 (921) : 1-24 (marzo 2022)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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