Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba

Autores
Belaj, Angjelina; Ninot, Antònia; Gómez-Gálvez, Francisco J.; El Riachy, Milad; Gurbuz-Veral, Melek; Torres, Myriam Mariela; Lazaj, Adhurim; Klepo, Tatjana; Paz, Sergio; Ugarte, Javier; Baldoni, Luciana; Lorite, Ignacio J.; Satovic, Zlatko; de la Rosa, Raúl
Año de publicación
2022
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.
Fil: Belaj, Angjelina. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
Fil: Ninot, Antònia. Institut de Recerca I Technologia Agroalimentaries; España
Fil: Gómez-Gálvez, Francisco J.. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
Fil: El Riachy, Milad. Institut de Recherches Agronomiques Libanais; Turquía
Fil: Gurbuz-Veral, Melek. Olive Research Institute; Turquía
Fil: Torres, Myriam Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza - San Juan. Estación Experimental Agropecuaria San Juan; Argentina
Fil: Lazaj, Adhurim. Qendra e Transferimit te Teknologjise Bujqesore; Albania
Fil: Klepo, Tatjana. Croatian Agency For Agriculture And Food; Croacia
Fil: Paz, Sergio. Servicio de Transferencia de Tecnología Conselleria de Agricultura, Desarrollo Rural, Emergencia Climática y Transición Ecológica—Generalitat Valenciana; España
Fil: Ugarte, Javier. Gobierno de la Rioja. Servicio de Investigación Agraria y Sanidad Vegetal; España
Fil: Baldoni, Luciana. Consiglio Nazionale delle Ricerche; Italia. Institute of Biosciences and Bioresources; Italia
Fil: Lorite, Ignacio J.. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
Fil: Satovic, Zlatko. University Of Zagreb. Faculty Of Agriculture; Croacia. Centre Of Excellence For Biodiversity And Molecular Plant Breeding; Croacia
Fil: de la Rosa, Raúl. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
Materia
EST-SNPS
GENETIC DIVERSITY
GENOTYPING
HOMONYMS
OLIVE GERMPLASM
SYNONYMS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/204694
Acceder
id CONICETDig_e1c856393c36af58002057519a311eb6
oai_identifier_str oai:ri.conicet.gov.ar:11336/204694
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of CórdobaBelaj, AngjelinaNinot, AntòniaGómez-Gálvez, Francisco J.El Riachy, MiladGurbuz-Veral, MelekTorres, Myriam MarielaLazaj, AdhurimKlepo, TatjanaPaz, SergioUgarte, JavierBaldoni, LucianaLorite, Ignacio J.Satovic, Zlatkode la Rosa, RaúlEST-SNPSGENETIC DIVERSITYGENOTYPINGHOMONYMSOLIVE GERMPLASMSYNONYMShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.Fil: Belaj, Angjelina. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; EspañaFil: Ninot, Antònia. Institut de Recerca I Technologia Agroalimentaries; EspañaFil: Gómez-Gálvez, Francisco J.. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; EspañaFil: El Riachy, Milad. Institut de Recherches Agronomiques Libanais; TurquíaFil: Gurbuz-Veral, Melek. Olive Research Institute; TurquíaFil: Torres, Myriam Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza - San Juan. Estación Experimental Agropecuaria San Juan; ArgentinaFil: Lazaj, Adhurim. Qendra e Transferimit te Teknologjise Bujqesore; AlbaniaFil: Klepo, Tatjana. Croatian Agency For Agriculture And Food; CroaciaFil: Paz, Sergio. Servicio de Transferencia de Tecnología Conselleria de Agricultura, Desarrollo Rural, Emergencia Climática y Transición Ecológica—Generalitat Valenciana; EspañaFil: Ugarte, Javier. Gobierno de la Rioja. Servicio de Investigación Agraria y Sanidad Vegetal; EspañaFil: Baldoni, Luciana. Consiglio Nazionale delle Ricerche; Italia. Institute of Biosciences and Bioresources; ItaliaFil: Lorite, Ignacio J.. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; EspañaFil: Satovic, Zlatko. University Of Zagreb. Faculty Of Agriculture; Croacia. Centre Of Excellence For Biodiversity And Molecular Plant Breeding; CroaciaFil: de la Rosa, Raúl. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; EspañaMultidisciplinary Digital Publishing Institute2022-04-29info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/204694Belaj, Angjelina; Ninot, Antònia; Gómez-Gálvez, Francisco J.; El Riachy, Milad; Gurbuz-Veral, Melek; et al.; Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba; Multidisciplinary Digital Publishing Institute; Plants; 11; 7; 29-4-2022; 1-242223-7747CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/2223-7747/11/7/921info:eu-repo/semantics/altIdentifier/doi/10.3390/plants11070921info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T15:10:41Zoai:ri.conicet.gov.ar:11336/204694instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 15:10:42.072CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
spellingShingle Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
Belaj, Angjelina
EST-SNPS
GENETIC DIVERSITY
GENOTYPING
HOMONYMS
OLIVE GERMPLASM
SYNONYMS
title_short Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_full Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_fullStr Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_full_unstemmed Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
title_sort Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
dc.creator.none.fl_str_mv Belaj, Angjelina
Ninot, Antònia
Gómez-Gálvez, Francisco J.
El Riachy, Milad
Gurbuz-Veral, Melek
Torres, Myriam Mariela
Lazaj, Adhurim
Klepo, Tatjana
Paz, Sergio
Ugarte, Javier
Baldoni, Luciana
Lorite, Ignacio J.
Satovic, Zlatko
de la Rosa, Raúl
author Belaj, Angjelina
author_facet Belaj, Angjelina
Ninot, Antònia
Gómez-Gálvez, Francisco J.
El Riachy, Milad
Gurbuz-Veral, Melek
Torres, Myriam Mariela
Lazaj, Adhurim
Klepo, Tatjana
Paz, Sergio
Ugarte, Javier
Baldoni, Luciana
Lorite, Ignacio J.
Satovic, Zlatko
de la Rosa, Raúl
author_role author
author2 Ninot, Antònia
Gómez-Gálvez, Francisco J.
El Riachy, Milad
Gurbuz-Veral, Melek
Torres, Myriam Mariela
Lazaj, Adhurim
Klepo, Tatjana
Paz, Sergio
Ugarte, Javier
Baldoni, Luciana
Lorite, Ignacio J.
Satovic, Zlatko
de la Rosa, Raúl
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv EST-SNPS
GENETIC DIVERSITY
GENOTYPING
HOMONYMS
OLIVE GERMPLASM
SYNONYMS
topic EST-SNPS
GENETIC DIVERSITY
GENOTYPING
HOMONYMS
OLIVE GERMPLASM
SYNONYMS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.
Fil: Belaj, Angjelina. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
Fil: Ninot, Antònia. Institut de Recerca I Technologia Agroalimentaries; España
Fil: Gómez-Gálvez, Francisco J.. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
Fil: El Riachy, Milad. Institut de Recherches Agronomiques Libanais; Turquía
Fil: Gurbuz-Veral, Melek. Olive Research Institute; Turquía
Fil: Torres, Myriam Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza - San Juan. Estación Experimental Agropecuaria San Juan; Argentina
Fil: Lazaj, Adhurim. Qendra e Transferimit te Teknologjise Bujqesore; Albania
Fil: Klepo, Tatjana. Croatian Agency For Agriculture And Food; Croacia
Fil: Paz, Sergio. Servicio de Transferencia de Tecnología Conselleria de Agricultura, Desarrollo Rural, Emergencia Climática y Transición Ecológica—Generalitat Valenciana; España
Fil: Ugarte, Javier. Gobierno de la Rioja. Servicio de Investigación Agraria y Sanidad Vegetal; España
Fil: Baldoni, Luciana. Consiglio Nazionale delle Ricerche; Italia. Institute of Biosciences and Bioresources; Italia
Fil: Lorite, Ignacio J.. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
Fil: Satovic, Zlatko. University Of Zagreb. Faculty Of Agriculture; Croacia. Centre Of Excellence For Biodiversity And Molecular Plant Breeding; Croacia
Fil: de la Rosa, Raúl. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica; España
description Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources.
publishDate 2022
dc.date.none.fl_str_mv 2022-04-29
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/204694
Belaj, Angjelina; Ninot, Antònia; Gómez-Gálvez, Francisco J.; El Riachy, Milad; Gurbuz-Veral, Melek; et al.; Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba; Multidisciplinary Digital Publishing Institute; Plants; 11; 7; 29-4-2022; 1-24
2223-7747
CONICET Digital
CONICET
url http://hdl.handle.net/11336/204694
identifier_str_mv Belaj, Angjelina; Ninot, Antònia; Gómez-Gálvez, Francisco J.; El Riachy, Milad; Gurbuz-Veral, Melek; et al.; Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba; Multidisciplinary Digital Publishing Institute; Plants; 11; 7; 29-4-2022; 1-24
2223-7747
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/2223-7747/11/7/921
info:eu-repo/semantics/altIdentifier/doi/10.3390/plants11070921
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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