16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters

Autores
Rodriguez Florez, Clara Natalia; Malits, Andrea; Lozada, Mariana
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
We provide a 16S rRNA gene dataset of prokaryotic assemblages of a subantarctic marine ecosystem. Samples were collected at 2 stations (one near Ushuaia Bay and the other close to Bridges islands in the Beagle Channel). At each station, 2 depths (subsurface and bottom waters) were sampled in february, march, may and september during 2018, giving a total of 10 samples. 16S rRNA gene amplicon sequencing (V4 hypervariable region) was performed with the Illumina MiSeq platform. A total of 1116 amplicon sequence variants (ASVs) were recovered from the dataset. The sequences were taxonomically assigned to Alphaproteobacteria (23 ± 2%, mean ± standard error), Gammaproteobacteria (17 ± 1.5%), Flavobacteriia (8 ± 2%), Deltaproteobacteria (3.7 ± 0.5%), Acidimicrobiia (1.7 ± 0.1%), Planctomycetia (1.9 ± 0.4%), and AB16 group (1.7 ± 0.3%). Sequences affiliated with Archaea were abundant, reaching one third of analyzed sequences, mainly Thaumarchaeota (22 ± 3%), and Thermoplasmata (10 ± 1%). Together, sequences assigned to all these groups accounted for more than 90% of the sequences. This dataset constitutes a valuable resource for future scientific research aiming to unveil the role of these communities in ecosystem services such as carbon and nutrient cycling, and pollutants degradation. This will turn into benefits for future environmental monitoring and preservation actions, considering the tangible heritage of Ushuaia Bay and surrounding waters.
Fil: Rodriguez Florez, Clara Natalia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina
Fil: Malits, Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina
Fil: Lozada, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Biología de Organismos Marinos; Argentina
Materia
16S RRNA
ARCHAEA
BACTERIA
GENE AMPLICON SEQUENCING
SEAWATER
SUBANTARCTIC
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/125931
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/125931
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding watersRodriguez Florez, Clara NataliaMalits, AndreaLozada, Mariana16S RRNAARCHAEABACTERIAGENE AMPLICON SEQUENCINGSEAWATERSUBANTARCTIChttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1We provide a 16S rRNA gene dataset of prokaryotic assemblages of a subantarctic marine ecosystem. Samples were collected at 2 stations (one near Ushuaia Bay and the other close to Bridges islands in the Beagle Channel). At each station, 2 depths (subsurface and bottom waters) were sampled in february, march, may and september during 2018, giving a total of 10 samples. 16S rRNA gene amplicon sequencing (V4 hypervariable region) was performed with the Illumina MiSeq platform. A total of 1116 amplicon sequence variants (ASVs) were recovered from the dataset. The sequences were taxonomically assigned to Alphaproteobacteria (23 ± 2%, mean ± standard error), Gammaproteobacteria (17 ± 1.5%), Flavobacteriia (8 ± 2%), Deltaproteobacteria (3.7 ± 0.5%), Acidimicrobiia (1.7 ± 0.1%), Planctomycetia (1.9 ± 0.4%), and AB16 group (1.7 ± 0.3%). Sequences affiliated with Archaea were abundant, reaching one third of analyzed sequences, mainly Thaumarchaeota (22 ± 3%), and Thermoplasmata (10 ± 1%). Together, sequences assigned to all these groups accounted for more than 90% of the sequences. This dataset constitutes a valuable resource for future scientific research aiming to unveil the role of these communities in ecosystem services such as carbon and nutrient cycling, and pollutants degradation. This will turn into benefits for future environmental monitoring and preservation actions, considering the tangible heritage of Ushuaia Bay and surrounding waters.Fil: Rodriguez Florez, Clara Natalia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; ArgentinaFil: Malits, Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; ArgentinaFil: Lozada, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Biología de Organismos Marinos; ArgentinaElsevier Inc2020-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/125931Rodriguez Florez, Clara Natalia; Malits, Andrea; Lozada, Mariana; 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters; Elsevier Inc; Data in Brief; 32; 10-2020; 1-52352-3409CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.dib.2020.106171info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S2352340920310659?via%3Dihubinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:52:06Zoai:ri.conicet.gov.ar:11336/125931instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:52:06.361CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
title 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
spellingShingle 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
Rodriguez Florez, Clara Natalia
16S RRNA
ARCHAEA
BACTERIA
GENE AMPLICON SEQUENCING
SEAWATER
SUBANTARCTIC
title_short 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
title_full 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
title_fullStr 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
title_full_unstemmed 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
title_sort 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
dc.creator.none.fl_str_mv Rodriguez Florez, Clara Natalia
Malits, Andrea
Lozada, Mariana
author Rodriguez Florez, Clara Natalia
author_facet Rodriguez Florez, Clara Natalia
Malits, Andrea
Lozada, Mariana
author_role author
author2 Malits, Andrea
Lozada, Mariana
author2_role author
author
dc.subject.none.fl_str_mv 16S RRNA
ARCHAEA
BACTERIA
GENE AMPLICON SEQUENCING
SEAWATER
SUBANTARCTIC
topic 16S RRNA
ARCHAEA
BACTERIA
GENE AMPLICON SEQUENCING
SEAWATER
SUBANTARCTIC
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv We provide a 16S rRNA gene dataset of prokaryotic assemblages of a subantarctic marine ecosystem. Samples were collected at 2 stations (one near Ushuaia Bay and the other close to Bridges islands in the Beagle Channel). At each station, 2 depths (subsurface and bottom waters) were sampled in february, march, may and september during 2018, giving a total of 10 samples. 16S rRNA gene amplicon sequencing (V4 hypervariable region) was performed with the Illumina MiSeq platform. A total of 1116 amplicon sequence variants (ASVs) were recovered from the dataset. The sequences were taxonomically assigned to Alphaproteobacteria (23 ± 2%, mean ± standard error), Gammaproteobacteria (17 ± 1.5%), Flavobacteriia (8 ± 2%), Deltaproteobacteria (3.7 ± 0.5%), Acidimicrobiia (1.7 ± 0.1%), Planctomycetia (1.9 ± 0.4%), and AB16 group (1.7 ± 0.3%). Sequences affiliated with Archaea were abundant, reaching one third of analyzed sequences, mainly Thaumarchaeota (22 ± 3%), and Thermoplasmata (10 ± 1%). Together, sequences assigned to all these groups accounted for more than 90% of the sequences. This dataset constitutes a valuable resource for future scientific research aiming to unveil the role of these communities in ecosystem services such as carbon and nutrient cycling, and pollutants degradation. This will turn into benefits for future environmental monitoring and preservation actions, considering the tangible heritage of Ushuaia Bay and surrounding waters.
Fil: Rodriguez Florez, Clara Natalia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina
Fil: Malits, Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina
Fil: Lozada, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Biología de Organismos Marinos; Argentina
description We provide a 16S rRNA gene dataset of prokaryotic assemblages of a subantarctic marine ecosystem. Samples were collected at 2 stations (one near Ushuaia Bay and the other close to Bridges islands in the Beagle Channel). At each station, 2 depths (subsurface and bottom waters) were sampled in february, march, may and september during 2018, giving a total of 10 samples. 16S rRNA gene amplicon sequencing (V4 hypervariable region) was performed with the Illumina MiSeq platform. A total of 1116 amplicon sequence variants (ASVs) were recovered from the dataset. The sequences were taxonomically assigned to Alphaproteobacteria (23 ± 2%, mean ± standard error), Gammaproteobacteria (17 ± 1.5%), Flavobacteriia (8 ± 2%), Deltaproteobacteria (3.7 ± 0.5%), Acidimicrobiia (1.7 ± 0.1%), Planctomycetia (1.9 ± 0.4%), and AB16 group (1.7 ± 0.3%). Sequences affiliated with Archaea were abundant, reaching one third of analyzed sequences, mainly Thaumarchaeota (22 ± 3%), and Thermoplasmata (10 ± 1%). Together, sequences assigned to all these groups accounted for more than 90% of the sequences. This dataset constitutes a valuable resource for future scientific research aiming to unveil the role of these communities in ecosystem services such as carbon and nutrient cycling, and pollutants degradation. This will turn into benefits for future environmental monitoring and preservation actions, considering the tangible heritage of Ushuaia Bay and surrounding waters.
publishDate 2020
dc.date.none.fl_str_mv 2020-10
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/125931
Rodriguez Florez, Clara Natalia; Malits, Andrea; Lozada, Mariana; 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters; Elsevier Inc; Data in Brief; 32; 10-2020; 1-5
2352-3409
CONICET Digital
CONICET
url http://hdl.handle.net/11336/125931
identifier_str_mv Rodriguez Florez, Clara Natalia; Malits, Andrea; Lozada, Mariana; 16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters; Elsevier Inc; Data in Brief; 32; 10-2020; 1-5
2352-3409
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1016/j.dib.2020.106171
info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S2352340920310659?via%3Dihub
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Elsevier Inc
publisher.none.fl_str_mv Elsevier Inc
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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