Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity

Autores
Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.
Año de publicación
2011
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies.
Fil: Wynn, Michelle L.. University of Michigan Medical School; Estados Unidos
Fil: Ventura, Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Fisiología, Biología Molecular y Celular. Laboratorio de Fisiología y Biología Molecular; Argentina. University of Michigan Medical School; Estados Unidos
Fil: Sepulchre, Jacques Alexandre. Centre National de la Recherche Scientifique; Francia
Fil: García, Héctor J.. University of Michigan; Estados Unidos
Fil: Merajver, Sofia D.. University of Michigan Medical School; Estados Unidos
Materia
CELL SIGNALING
RETROACTIVITY
KINASE INHIBITORS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/89494

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network_name_str CONICET Digital (CONICET)
spelling Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivityWynn, Michelle L.Ventura, AlejandraSepulchre, Jacques AlexandreGarcía, Héctor J.Merajver, Sofia D.CELL SIGNALINGRETROACTIVITYKINASE INHIBITORShttps://purl.org/becyt/ford/1.3https://purl.org/becyt/ford/1Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies.Fil: Wynn, Michelle L.. University of Michigan Medical School; Estados UnidosFil: Ventura, Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Fisiología, Biología Molecular y Celular. Laboratorio de Fisiología y Biología Molecular; Argentina. University of Michigan Medical School; Estados UnidosFil: Sepulchre, Jacques Alexandre. Centre National de la Recherche Scientifique; FranciaFil: García, Héctor J.. University of Michigan; Estados UnidosFil: Merajver, Sofia D.. University of Michigan Medical School; Estados UnidosBioMed Central2011-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/89494Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.; Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity; BioMed Central; Bmc Systems Biology; 5; 156; 10-2011; 1-151752-0509CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-5-156info:eu-repo/semantics/altIdentifier/doi/10.1186/1752-0509-5-156info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:55:28Zoai:ri.conicet.gov.ar:11336/89494instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:55:28.46CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
title Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
spellingShingle Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
Wynn, Michelle L.
CELL SIGNALING
RETROACTIVITY
KINASE INHIBITORS
title_short Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
title_full Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
title_fullStr Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
title_full_unstemmed Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
title_sort Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
dc.creator.none.fl_str_mv Wynn, Michelle L.
Ventura, Alejandra
Sepulchre, Jacques Alexandre
García, Héctor J.
Merajver, Sofia D.
author Wynn, Michelle L.
author_facet Wynn, Michelle L.
Ventura, Alejandra
Sepulchre, Jacques Alexandre
García, Héctor J.
Merajver, Sofia D.
author_role author
author2 Ventura, Alejandra
Sepulchre, Jacques Alexandre
García, Héctor J.
Merajver, Sofia D.
author2_role author
author
author
author
dc.subject.none.fl_str_mv CELL SIGNALING
RETROACTIVITY
KINASE INHIBITORS
topic CELL SIGNALING
RETROACTIVITY
KINASE INHIBITORS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.3
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies.
Fil: Wynn, Michelle L.. University of Michigan Medical School; Estados Unidos
Fil: Ventura, Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Fisiología, Biología Molecular y Celular. Laboratorio de Fisiología y Biología Molecular; Argentina. University of Michigan Medical School; Estados Unidos
Fil: Sepulchre, Jacques Alexandre. Centre National de la Recherche Scientifique; Francia
Fil: García, Héctor J.. University of Michigan; Estados Unidos
Fil: Merajver, Sofia D.. University of Michigan Medical School; Estados Unidos
description Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies.
publishDate 2011
dc.date.none.fl_str_mv 2011-10
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/89494
Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.; Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity; BioMed Central; Bmc Systems Biology; 5; 156; 10-2011; 1-15
1752-0509
CONICET Digital
CONICET
url http://hdl.handle.net/11336/89494
identifier_str_mv Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.; Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity; BioMed Central; Bmc Systems Biology; 5; 156; 10-2011; 1-15
1752-0509
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
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info:eu-repo/semantics/altIdentifier/doi/10.1186/1752-0509-5-156
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rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
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