Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
- Autores
- Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.
- Año de publicación
- 2011
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies.
Fil: Wynn, Michelle L.. University of Michigan Medical School; Estados Unidos
Fil: Ventura, Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Fisiología, Biología Molecular y Celular. Laboratorio de Fisiología y Biología Molecular; Argentina. University of Michigan Medical School; Estados Unidos
Fil: Sepulchre, Jacques Alexandre. Centre National de la Recherche Scientifique; Francia
Fil: García, Héctor J.. University of Michigan; Estados Unidos
Fil: Merajver, Sofia D.. University of Michigan Medical School; Estados Unidos - Materia
-
CELL SIGNALING
RETROACTIVITY
KINASE INHIBITORS - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/89494
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oai:ri.conicet.gov.ar:11336/89494 |
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Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivityWynn, Michelle L.Ventura, AlejandraSepulchre, Jacques AlexandreGarcía, Héctor J.Merajver, Sofia D.CELL SIGNALINGRETROACTIVITYKINASE INHIBITORShttps://purl.org/becyt/ford/1.3https://purl.org/becyt/ford/1Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies.Fil: Wynn, Michelle L.. University of Michigan Medical School; Estados UnidosFil: Ventura, Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Fisiología, Biología Molecular y Celular. Laboratorio de Fisiología y Biología Molecular; Argentina. University of Michigan Medical School; Estados UnidosFil: Sepulchre, Jacques Alexandre. Centre National de la Recherche Scientifique; FranciaFil: García, Héctor J.. University of Michigan; Estados UnidosFil: Merajver, Sofia D.. University of Michigan Medical School; Estados UnidosBioMed Central2011-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/89494Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.; Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity; BioMed Central; Bmc Systems Biology; 5; 156; 10-2011; 1-151752-0509CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-5-156info:eu-repo/semantics/altIdentifier/doi/10.1186/1752-0509-5-156info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:55:28Zoai:ri.conicet.gov.ar:11336/89494instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:55:28.46CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity |
title |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity |
spellingShingle |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity Wynn, Michelle L. CELL SIGNALING RETROACTIVITY KINASE INHIBITORS |
title_short |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity |
title_full |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity |
title_fullStr |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity |
title_full_unstemmed |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity |
title_sort |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity |
dc.creator.none.fl_str_mv |
Wynn, Michelle L. Ventura, Alejandra Sepulchre, Jacques Alexandre García, Héctor J. Merajver, Sofia D. |
author |
Wynn, Michelle L. |
author_facet |
Wynn, Michelle L. Ventura, Alejandra Sepulchre, Jacques Alexandre García, Héctor J. Merajver, Sofia D. |
author_role |
author |
author2 |
Ventura, Alejandra Sepulchre, Jacques Alexandre García, Héctor J. Merajver, Sofia D. |
author2_role |
author author author author |
dc.subject.none.fl_str_mv |
CELL SIGNALING RETROACTIVITY KINASE INHIBITORS |
topic |
CELL SIGNALING RETROACTIVITY KINASE INHIBITORS |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.3 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies. Fil: Wynn, Michelle L.. University of Michigan Medical School; Estados Unidos Fil: Ventura, Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Fisiología, Biología Molecular y Celular. Laboratorio de Fisiología y Biología Molecular; Argentina. University of Michigan Medical School; Estados Unidos Fil: Sepulchre, Jacques Alexandre. Centre National de la Recherche Scientifique; Francia Fil: García, Héctor J.. University of Michigan; Estados Unidos Fil: Merajver, Sofia D.. University of Michigan Medical School; Estados Unidos |
description |
Background: It has been shown in experimental and theoretical work that covalently modified signaling cascades naturally exhibit bidirectional signal propagation via a phenomenon known as retroactivity. An important consequence of retroactivity, which arises due to enzyme sequestration in covalently modified signaling cascades, is that a downstream perturbation can produce a response in a component upstream of the perturbation without the need for explicit feedback connections. Retroactivity may, therefore, play an important role in the cellular response to a targeted therapy. Kinase inhibitors are a class of targeted therapies designed to interfere with a specific kinase molecule in a dysregulated signaling pathway. While extremely promising as anti-cancer agents, kinase inhibitors may produce undesirable off-target effects by non-specific interactions or pathway cross-talk. We hypothesize that targeted therapies such as kinase inhibitors can produce off-target effects as a consequence of retroactivity alone.Results: We used a computational model and a series of simple signaling motifs to test the hypothesis. Our results indicate that within physiologically and therapeutically relevant ranges for all parameters, a targeted inhibitor can naturally induce an off-target effect via retroactivity. The kinetics governing covalent modification cycles in a signaling network were more important for propagating an upstream off-target effect in our models than the kinetics governing the targeted therapy itself. Our results also reveal the surprising and crucial result that kinase inhibitors have the capacity to turn "on" an otherwise "off" parallel cascade when two cascades share an upstream activator.Conclusions: A proper and detailed characterization of a pathway's structure is important for identifying the optimal protein to target as well as what concentration of the targeted therapy is required to modulate the pathway in a safe and effective manner. We believe our results support the position that such characterizations should consider retroactivity as a robust potential source of off-target effects induced by kinase inhibitors and other targeted therapies. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011-10 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/89494 Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.; Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity; BioMed Central; Bmc Systems Biology; 5; 156; 10-2011; 1-15 1752-0509 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/89494 |
identifier_str_mv |
Wynn, Michelle L.; Ventura, Alejandra; Sepulchre, Jacques Alexandre; García, Héctor J.; Merajver, Sofia D.; Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity; BioMed Central; Bmc Systems Biology; 5; 156; 10-2011; 1-15 1752-0509 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-5-156 info:eu-repo/semantics/altIdentifier/doi/10.1186/1752-0509-5-156 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
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application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
BioMed Central |
publisher.none.fl_str_mv |
BioMed Central |
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CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
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