High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
- Autores
- Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.
- Año de publicación
- 2020
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.
Fil: Bejerman, Nicolas. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma | Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma; Argentina
Fil: Roumagnac, Philippe. Université Montpellier II; Francia
Fil: Nemchinov, Lev G.. Fundación para el Estudio de Especies Invasivas; Argentina - Materia
-
ALFALFA
EMERGING VIRUSES
HIGH THROUGHPUT SEQUENCING
MEDICAGO SATIVAL
VIROME - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/145886
Ver los metadatos del registro completo
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High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)Bejerman, NicolasRoumagnac, PhilippeNemchinov, Lev G.ALFALFAEMERGING VIRUSESHIGH THROUGHPUT SEQUENCINGMEDICAGO SATIVALVIROMEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.Fil: Bejerman, Nicolas. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma | Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma; ArgentinaFil: Roumagnac, Philippe. Université Montpellier II; FranciaFil: Nemchinov, Lev G.. Fundación para el Estudio de Especies Invasivas; ArgentinaFrontiers Media2020-09-11info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/145886Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.; High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.); Frontiers Media; Frontiers in Microbiology; 11; 553109; 11-9-2020; 1-171664-302XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.3389/fmicb.2020.553109info:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/fullinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:59:19Zoai:ri.conicet.gov.ar:11336/145886instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:59:19.741CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
title |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
spellingShingle |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) Bejerman, Nicolas ALFALFA EMERGING VIRUSES HIGH THROUGHPUT SEQUENCING MEDICAGO SATIVAL VIROME |
title_short |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
title_full |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
title_fullStr |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
title_full_unstemmed |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
title_sort |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
dc.creator.none.fl_str_mv |
Bejerman, Nicolas Roumagnac, Philippe Nemchinov, Lev G. |
author |
Bejerman, Nicolas |
author_facet |
Bejerman, Nicolas Roumagnac, Philippe Nemchinov, Lev G. |
author_role |
author |
author2 |
Roumagnac, Philippe Nemchinov, Lev G. |
author2_role |
author author |
dc.subject.none.fl_str_mv |
ALFALFA EMERGING VIRUSES HIGH THROUGHPUT SEQUENCING MEDICAGO SATIVAL VIROME |
topic |
ALFALFA EMERGING VIRUSES HIGH THROUGHPUT SEQUENCING MEDICAGO SATIVAL VIROME |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies. Fil: Bejerman, Nicolas. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma | Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma; Argentina Fil: Roumagnac, Philippe. Université Montpellier II; Francia Fil: Nemchinov, Lev G.. Fundación para el Estudio de Especies Invasivas; Argentina |
description |
Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-09-11 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/145886 Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.; High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.); Frontiers Media; Frontiers in Microbiology; 11; 553109; 11-9-2020; 1-17 1664-302X CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/145886 |
identifier_str_mv |
Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.; High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.); Frontiers Media; Frontiers in Microbiology; 11; 553109; 11-9-2020; 1-17 1664-302X CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/doi/10.3389/fmicb.2020.553109 info:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/full |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Frontiers Media |
publisher.none.fl_str_mv |
Frontiers Media |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) |
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CONICET Digital (CONICET) |
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Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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13.13397 |