High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)

Autores
Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.
Fil: Bejerman, Nicolas. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma | Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma; Argentina
Fil: Roumagnac, Philippe. Université Montpellier II; Francia
Fil: Nemchinov, Lev G.. Fundación para el Estudio de Especies Invasivas; Argentina
Materia
ALFALFA
EMERGING VIRUSES
HIGH THROUGHPUT SEQUENCING
MEDICAGO SATIVAL
VIROME
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/145886

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spelling High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)Bejerman, NicolasRoumagnac, PhilippeNemchinov, Lev G.ALFALFAEMERGING VIRUSESHIGH THROUGHPUT SEQUENCINGMEDICAGO SATIVALVIROMEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.Fil: Bejerman, Nicolas. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma | Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma; ArgentinaFil: Roumagnac, Philippe. Université Montpellier II; FranciaFil: Nemchinov, Lev G.. Fundación para el Estudio de Especies Invasivas; ArgentinaFrontiers Media2020-09-11info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/145886Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.; High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.); Frontiers Media; Frontiers in Microbiology; 11; 553109; 11-9-2020; 1-171664-302XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.3389/fmicb.2020.553109info:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/fullinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:59:19Zoai:ri.conicet.gov.ar:11336/145886instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:59:19.741CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
spellingShingle High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
Bejerman, Nicolas
ALFALFA
EMERGING VIRUSES
HIGH THROUGHPUT SEQUENCING
MEDICAGO SATIVAL
VIROME
title_short High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_full High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_fullStr High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_full_unstemmed High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_sort High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
dc.creator.none.fl_str_mv Bejerman, Nicolas
Roumagnac, Philippe
Nemchinov, Lev G.
author Bejerman, Nicolas
author_facet Bejerman, Nicolas
Roumagnac, Philippe
Nemchinov, Lev G.
author_role author
author2 Roumagnac, Philippe
Nemchinov, Lev G.
author2_role author
author
dc.subject.none.fl_str_mv ALFALFA
EMERGING VIRUSES
HIGH THROUGHPUT SEQUENCING
MEDICAGO SATIVAL
VIROME
topic ALFALFA
EMERGING VIRUSES
HIGH THROUGHPUT SEQUENCING
MEDICAGO SATIVAL
VIROME
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.
Fil: Bejerman, Nicolas. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma | Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Unidad de Fitopatología y Modelización Agrícola. Grupo Vinculado Catedra de Estadística y Biometría de la Facultad de Ciencias Agropecuarias de la Universidad Nacional de Córdoba al Ufyma; Argentina
Fil: Roumagnac, Philippe. Université Montpellier II; Francia
Fil: Nemchinov, Lev G.. Fundación para el Estudio de Especies Invasivas; Argentina
description Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.
publishDate 2020
dc.date.none.fl_str_mv 2020-09-11
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/145886
Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.; High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.); Frontiers Media; Frontiers in Microbiology; 11; 553109; 11-9-2020; 1-17
1664-302X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/145886
identifier_str_mv Bejerman, Nicolas; Roumagnac, Philippe; Nemchinov, Lev G.; High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.); Frontiers Media; Frontiers in Microbiology; 11; 553109; 11-9-2020; 1-17
1664-302X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.3389/fmicb.2020.553109
info:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/full
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Frontiers Media
publisher.none.fl_str_mv Frontiers Media
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
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