High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)

Autores
Bejerman, Nicolas Esteban; Roumagnac, Philippe; Nemchinov, Lev G.
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.
Instituto de Patología Vegetal
Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFYMA); Argentina
Fil: Roumagnac, Philippe. CIRAD, BGPI. Montpellier; France. Université Montpellier. Institut Agro. BGPI, INRAE, CIRAD. Montpellier; Francia
Fil: Nemchinov, Lev G. Plant Sciences Institute. Molecular Plant Pathology Laboratory; Estados Unidos
Fuente
Frontiers in Microbiology 11 : 553109. (2020)
Materia
Medicago Sativa
Plantas Forrajeras
Plant Viruses
Feed Crops
Virus de las Plantas
Alfalfa
Cultivo Forrajero
Virome
High Throughput Sequencing
Emerging Viruses
Lucerne
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/8365
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spelling High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)Bejerman, Nicolas EstebanRoumagnac, PhilippeNemchinov, Lev G.Medicago SativaPlantas ForrajerasPlant VirusesFeed CropsVirus de las PlantasAlfalfaCultivo ForrajeroViromeHigh Throughput SequencingEmerging VirusesLucerneAlfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.Instituto de Patología VegetalFil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFYMA); ArgentinaFil: Roumagnac, Philippe. CIRAD, BGPI. Montpellier; France. Université Montpellier. Institut Agro. BGPI, INRAE, CIRAD. Montpellier; FranciaFil: Nemchinov, Lev G. Plant Sciences Institute. Molecular Plant Pathology Laboratory; Estados UnidosFrontiers Media2020-12-02T14:00:32Z2020-12-02T14:00:32Z2020-09-11info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/fullhttp://hdl.handle.net/20.500.12123/83651664-302Xhttps://doi.org/10.3389/fmicb.2020.553109Frontiers in Microbiology 11 : 553109. (2020)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-04T09:48:43Zoai:localhost:20.500.12123/8365instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:48:43.815INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
spellingShingle High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
Bejerman, Nicolas Esteban
Medicago Sativa
Plantas Forrajeras
Plant Viruses
Feed Crops
Virus de las Plantas
Alfalfa
Cultivo Forrajero
Virome
High Throughput Sequencing
Emerging Viruses
Lucerne
title_short High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_full High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_fullStr High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_full_unstemmed High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
title_sort High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
dc.creator.none.fl_str_mv Bejerman, Nicolas Esteban
Roumagnac, Philippe
Nemchinov, Lev G.
author Bejerman, Nicolas Esteban
author_facet Bejerman, Nicolas Esteban
Roumagnac, Philippe
Nemchinov, Lev G.
author_role author
author2 Roumagnac, Philippe
Nemchinov, Lev G.
author2_role author
author
dc.subject.none.fl_str_mv Medicago Sativa
Plantas Forrajeras
Plant Viruses
Feed Crops
Virus de las Plantas
Alfalfa
Cultivo Forrajero
Virome
High Throughput Sequencing
Emerging Viruses
Lucerne
topic Medicago Sativa
Plantas Forrajeras
Plant Viruses
Feed Crops
Virus de las Plantas
Alfalfa
Cultivo Forrajero
Virome
High Throughput Sequencing
Emerging Viruses
Lucerne
dc.description.none.fl_txt_mv Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.
Instituto de Patología Vegetal
Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFYMA); Argentina
Fil: Roumagnac, Philippe. CIRAD, BGPI. Montpellier; France. Université Montpellier. Institut Agro. BGPI, INRAE, CIRAD. Montpellier; Francia
Fil: Nemchinov, Lev G. Plant Sciences Institute. Molecular Plant Pathology Laboratory; Estados Unidos
description Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-02T14:00:32Z
2020-12-02T14:00:32Z
2020-09-11
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/full
http://hdl.handle.net/20.500.12123/8365
1664-302X
https://doi.org/10.3389/fmicb.2020.553109
url https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/full
http://hdl.handle.net/20.500.12123/8365
https://doi.org/10.3389/fmicb.2020.553109
identifier_str_mv 1664-302X
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Frontiers Media
publisher.none.fl_str_mv Frontiers Media
dc.source.none.fl_str_mv Frontiers in Microbiology 11 : 553109. (2020)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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