Meta-analysis of Chromatin Programming by Steroid Receptors

Autores
Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function.
Fil: Paakinaho, Ville. University Of Eastern Finland.; Finlandia
Fil: Swinstead, Erin E.. National Cancer Institute; Estados Unidos
Fil: Presman, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina
Fil: Grøntved, Lars. Technical University of Denmark; Dinamarca
Fil: Hager, Gordon L.. National Cancer Institute; Estados Unidos
Materia
CHROMATIN
CHROMATIN REMODELERS
DYNAMIC ASSISTED LOADING
FOXA1
PIONEER FACTORS
STEROID RECEPTORS
TRANSCRIPTION FACTORS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/123462

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network_name_str CONICET Digital (CONICET)
spelling Meta-analysis of Chromatin Programming by Steroid ReceptorsPaakinaho, VilleSwinstead, Erin E.Presman, Diego MartinGrøntved, LarsHager, Gordon L.CHROMATINCHROMATIN REMODELERSDYNAMIC ASSISTED LOADINGFOXA1PIONEER FACTORSSTEROID RECEPTORSTRANSCRIPTION FACTORShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function.Fil: Paakinaho, Ville. University Of Eastern Finland.; FinlandiaFil: Swinstead, Erin E.. National Cancer Institute; Estados UnidosFil: Presman, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; ArgentinaFil: Grøntved, Lars. Technical University of Denmark; DinamarcaFil: Hager, Gordon L.. National Cancer Institute; Estados UnidosElsevier2019-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/123462Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.; Meta-analysis of Chromatin Programming by Steroid Receptors; Elsevier; Cell Reports; 28; 13; 9-2019; 3523-3534.e22211-1247CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.celrep.2019.08.039info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T10:09:47Zoai:ri.conicet.gov.ar:11336/123462instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 10:09:47.641CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Meta-analysis of Chromatin Programming by Steroid Receptors
title Meta-analysis of Chromatin Programming by Steroid Receptors
spellingShingle Meta-analysis of Chromatin Programming by Steroid Receptors
Paakinaho, Ville
CHROMATIN
CHROMATIN REMODELERS
DYNAMIC ASSISTED LOADING
FOXA1
PIONEER FACTORS
STEROID RECEPTORS
TRANSCRIPTION FACTORS
title_short Meta-analysis of Chromatin Programming by Steroid Receptors
title_full Meta-analysis of Chromatin Programming by Steroid Receptors
title_fullStr Meta-analysis of Chromatin Programming by Steroid Receptors
title_full_unstemmed Meta-analysis of Chromatin Programming by Steroid Receptors
title_sort Meta-analysis of Chromatin Programming by Steroid Receptors
dc.creator.none.fl_str_mv Paakinaho, Ville
Swinstead, Erin E.
Presman, Diego Martin
Grøntved, Lars
Hager, Gordon L.
author Paakinaho, Ville
author_facet Paakinaho, Ville
Swinstead, Erin E.
Presman, Diego Martin
Grøntved, Lars
Hager, Gordon L.
author_role author
author2 Swinstead, Erin E.
Presman, Diego Martin
Grøntved, Lars
Hager, Gordon L.
author2_role author
author
author
author
dc.subject.none.fl_str_mv CHROMATIN
CHROMATIN REMODELERS
DYNAMIC ASSISTED LOADING
FOXA1
PIONEER FACTORS
STEROID RECEPTORS
TRANSCRIPTION FACTORS
topic CHROMATIN
CHROMATIN REMODELERS
DYNAMIC ASSISTED LOADING
FOXA1
PIONEER FACTORS
STEROID RECEPTORS
TRANSCRIPTION FACTORS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function.
Fil: Paakinaho, Ville. University Of Eastern Finland.; Finlandia
Fil: Swinstead, Erin E.. National Cancer Institute; Estados Unidos
Fil: Presman, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina
Fil: Grøntved, Lars. Technical University of Denmark; Dinamarca
Fil: Hager, Gordon L.. National Cancer Institute; Estados Unidos
description Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function.
publishDate 2019
dc.date.none.fl_str_mv 2019-09
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/123462
Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.; Meta-analysis of Chromatin Programming by Steroid Receptors; Elsevier; Cell Reports; 28; 13; 9-2019; 3523-3534.e2
2211-1247
CONICET Digital
CONICET
url http://hdl.handle.net/11336/123462
identifier_str_mv Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.; Meta-analysis of Chromatin Programming by Steroid Receptors; Elsevier; Cell Reports; 28; 13; 9-2019; 3523-3534.e2
2211-1247
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1016/j.celrep.2019.08.039
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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