Meta-analysis of Chromatin Programming by Steroid Receptors
- Autores
- Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.
- Año de publicación
- 2019
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function.
Fil: Paakinaho, Ville. University Of Eastern Finland.; Finlandia
Fil: Swinstead, Erin E.. National Cancer Institute; Estados Unidos
Fil: Presman, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina
Fil: Grøntved, Lars. Technical University of Denmark; Dinamarca
Fil: Hager, Gordon L.. National Cancer Institute; Estados Unidos - Materia
-
CHROMATIN
CHROMATIN REMODELERS
DYNAMIC ASSISTED LOADING
FOXA1
PIONEER FACTORS
STEROID RECEPTORS
TRANSCRIPTION FACTORS - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/123462
Ver los metadatos del registro completo
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Meta-analysis of Chromatin Programming by Steroid ReceptorsPaakinaho, VilleSwinstead, Erin E.Presman, Diego MartinGrøntved, LarsHager, Gordon L.CHROMATINCHROMATIN REMODELERSDYNAMIC ASSISTED LOADINGFOXA1PIONEER FACTORSSTEROID RECEPTORSTRANSCRIPTION FACTORShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function.Fil: Paakinaho, Ville. University Of Eastern Finland.; FinlandiaFil: Swinstead, Erin E.. National Cancer Institute; Estados UnidosFil: Presman, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; ArgentinaFil: Grøntved, Lars. Technical University of Denmark; DinamarcaFil: Hager, Gordon L.. National Cancer Institute; Estados UnidosElsevier2019-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/123462Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.; Meta-analysis of Chromatin Programming by Steroid Receptors; Elsevier; Cell Reports; 28; 13; 9-2019; 3523-3534.e22211-1247CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.celrep.2019.08.039info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T10:09:47Zoai:ri.conicet.gov.ar:11336/123462instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 10:09:47.641CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Meta-analysis of Chromatin Programming by Steroid Receptors |
title |
Meta-analysis of Chromatin Programming by Steroid Receptors |
spellingShingle |
Meta-analysis of Chromatin Programming by Steroid Receptors Paakinaho, Ville CHROMATIN CHROMATIN REMODELERS DYNAMIC ASSISTED LOADING FOXA1 PIONEER FACTORS STEROID RECEPTORS TRANSCRIPTION FACTORS |
title_short |
Meta-analysis of Chromatin Programming by Steroid Receptors |
title_full |
Meta-analysis of Chromatin Programming by Steroid Receptors |
title_fullStr |
Meta-analysis of Chromatin Programming by Steroid Receptors |
title_full_unstemmed |
Meta-analysis of Chromatin Programming by Steroid Receptors |
title_sort |
Meta-analysis of Chromatin Programming by Steroid Receptors |
dc.creator.none.fl_str_mv |
Paakinaho, Ville Swinstead, Erin E. Presman, Diego Martin Grøntved, Lars Hager, Gordon L. |
author |
Paakinaho, Ville |
author_facet |
Paakinaho, Ville Swinstead, Erin E. Presman, Diego Martin Grøntved, Lars Hager, Gordon L. |
author_role |
author |
author2 |
Swinstead, Erin E. Presman, Diego Martin Grøntved, Lars Hager, Gordon L. |
author2_role |
author author author author |
dc.subject.none.fl_str_mv |
CHROMATIN CHROMATIN REMODELERS DYNAMIC ASSISTED LOADING FOXA1 PIONEER FACTORS STEROID RECEPTORS TRANSCRIPTION FACTORS |
topic |
CHROMATIN CHROMATIN REMODELERS DYNAMIC ASSISTED LOADING FOXA1 PIONEER FACTORS STEROID RECEPTORS TRANSCRIPTION FACTORS |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function. Fil: Paakinaho, Ville. University Of Eastern Finland.; Finlandia Fil: Swinstead, Erin E.. National Cancer Institute; Estados Unidos Fil: Presman, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina Fil: Grøntved, Lars. Technical University of Denmark; Dinamarca Fil: Hager, Gordon L.. National Cancer Institute; Estados Unidos |
description |
Transcription factors (TFs) must access chromatin to bind to their response elements and regulate gene expression. A widely accepted model proposes that only a special subset of TFs, pioneer factors, can associate with condensed chromatin and initiate chromatin opening. We previously reported that steroid receptors (SRs), not considered pioneer factors, can assist the binding of an archetypal pioneer, the forkhead box protein 1 (FOXA1), at a subset of receptor-activated enhancers. These findings have been challenged recently, with the suggestion that newly acquired data fully support the prevailing pioneer model. Here, we reexamine our results and confirm the original conclusions. We also analyze and discuss a number of available datasets relevant to chromatin penetration by SRs and find a general consensus supporting our original observations. Hence, we propose that chromatin opening at some sites can be initiated by SRs, with a parallel recruitment of factors often treated as having a unique pioneer function. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-09 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/123462 Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.; Meta-analysis of Chromatin Programming by Steroid Receptors; Elsevier; Cell Reports; 28; 13; 9-2019; 3523-3534.e2 2211-1247 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/123462 |
identifier_str_mv |
Paakinaho, Ville; Swinstead, Erin E.; Presman, Diego Martin; Grøntved, Lars; Hager, Gordon L.; Meta-analysis of Chromatin Programming by Steroid Receptors; Elsevier; Cell Reports; 28; 13; 9-2019; 3523-3534.e2 2211-1247 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/doi/10.1016/j.celrep.2019.08.039 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier |
publisher.none.fl_str_mv |
Elsevier |
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reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) |
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CONICET Digital (CONICET) |
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Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
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