Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus

Autores
Bagayoko, Issiaka; Celli, Marcos Giovani; Romay, Gustavo; Poulicard, Nils; Pinel Galzi, Agnès; Julian, Charlotte; Filloux, Denis; Roumagnac, Philippe; Sérémé, Drissa; Bragard, Claude; Hébrard, Eugénie
Año de publicación
2021
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus Benyvirus.
Fil: Bagayoko, Issiaka. Université Catholique de Louvain; Bélgica
Fil: Celli, Marcos Giovani. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Romay, Gustavo. Université Catholique de Louvain; Bélgica
Fil: Poulicard, Nils. Université de Montpellier. Plant Health Institute; Francia
Fil: Pinel Galzi, Agnès. Université de Montpellier. Plant Health Institute; Francia
Fil: Julian, Charlotte. Université de Montpellier. Plant Health Institute; Francia
Fil: Filloux, Denis. Université de Montpellier. Plant Health Institute; Francia
Fil: Roumagnac, Philippe. Université de Montpellier. Plant Health Institute; Francia
Fil: Sérémé, Drissa. Institut de L'environnement Et de Recherches Agricoles Ouagadougou; Burkina Faso
Fil: Bragard, Claude. Université Catholique de Louvain; Bélgica
Fil: Hébrard, Eugénie. Université de Montpellier. Plant Health Institute; Francia
Materia
BENYVIRUS
DIVERSITY
RECOMBINATION
RSNV
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/184017
Acceder
id CONICETDig_9fdb9240268bc079227de2093bc1e2bf
oai_identifier_str oai:ri.conicet.gov.ar:11336/184017
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirusBagayoko, IssiakaCelli, Marcos GiovaniRomay, GustavoPoulicard, NilsPinel Galzi, AgnèsJulian, CharlotteFilloux, DenisRoumagnac, PhilippeSérémé, DrissaBragard, ClaudeHébrard, EugénieBENYVIRUSDIVERSITYRECOMBINATIONRSNVhttps://purl.org/becyt/ford/4.1https://purl.org/becyt/ford/4The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus Benyvirus.Fil: Bagayoko, Issiaka. Université Catholique de Louvain; BélgicaFil: Celli, Marcos Giovani. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Romay, Gustavo. Université Catholique de Louvain; BélgicaFil: Poulicard, Nils. Université de Montpellier. Plant Health Institute; FranciaFil: Pinel Galzi, Agnès. Université de Montpellier. Plant Health Institute; FranciaFil: Julian, Charlotte. Université de Montpellier. Plant Health Institute; FranciaFil: Filloux, Denis. Université de Montpellier. Plant Health Institute; FranciaFil: Roumagnac, Philippe. Université de Montpellier. Plant Health Institute; FranciaFil: Sérémé, Drissa. Institut de L'environnement Et de Recherches Agricoles Ouagadougou; Burkina FasoFil: Bragard, Claude. Université Catholique de Louvain; BélgicaFil: Hébrard, Eugénie. Université de Montpellier. Plant Health Institute; FranciaMDPI AG2021-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/184017Bagayoko, Issiaka; Celli, Marcos Giovani; Romay, Gustavo; Poulicard, Nils; Pinel Galzi, Agnès; et al.; Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus; MDPI AG; Viruses; 13; 5; 4-2021; 1-121999-4915CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/1999-4915/13/5/737info:eu-repo/semantics/altIdentifier/doi/10.3390/v13050737info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T14:43:06Zoai:ri.conicet.gov.ar:11336/184017instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 14:43:06.969CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
title Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
spellingShingle Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
Bagayoko, Issiaka
BENYVIRUS
DIVERSITY
RECOMBINATION
RSNV
title_short Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
title_full Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
title_fullStr Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
title_full_unstemmed Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
title_sort Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus
dc.creator.none.fl_str_mv Bagayoko, Issiaka
Celli, Marcos Giovani
Romay, Gustavo
Poulicard, Nils
Pinel Galzi, Agnès
Julian, Charlotte
Filloux, Denis
Roumagnac, Philippe
Sérémé, Drissa
Bragard, Claude
Hébrard, Eugénie
author Bagayoko, Issiaka
author_facet Bagayoko, Issiaka
Celli, Marcos Giovani
Romay, Gustavo
Poulicard, Nils
Pinel Galzi, Agnès
Julian, Charlotte
Filloux, Denis
Roumagnac, Philippe
Sérémé, Drissa
Bragard, Claude
Hébrard, Eugénie
author_role author
author2 Celli, Marcos Giovani
Romay, Gustavo
Poulicard, Nils
Pinel Galzi, Agnès
Julian, Charlotte
Filloux, Denis
Roumagnac, Philippe
Sérémé, Drissa
Bragard, Claude
Hébrard, Eugénie
author2_role author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv BENYVIRUS
DIVERSITY
RECOMBINATION
RSNV
topic BENYVIRUS
DIVERSITY
RECOMBINATION
RSNV
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.1
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus Benyvirus.
Fil: Bagayoko, Issiaka. Université Catholique de Louvain; Bélgica
Fil: Celli, Marcos Giovani. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigaciones Agropecuarias. Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Romay, Gustavo. Université Catholique de Louvain; Bélgica
Fil: Poulicard, Nils. Université de Montpellier. Plant Health Institute; Francia
Fil: Pinel Galzi, Agnès. Université de Montpellier. Plant Health Institute; Francia
Fil: Julian, Charlotte. Université de Montpellier. Plant Health Institute; Francia
Fil: Filloux, Denis. Université de Montpellier. Plant Health Institute; Francia
Fil: Roumagnac, Philippe. Université de Montpellier. Plant Health Institute; Francia
Fil: Sérémé, Drissa. Institut de L'environnement Et de Recherches Agricoles Ouagadougou; Burkina Faso
Fil: Bragard, Claude. Université Catholique de Louvain; Bélgica
Fil: Hébrard, Eugénie. Université de Montpellier. Plant Health Institute; Francia
description The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus Benyvirus.
publishDate 2021
dc.date.none.fl_str_mv 2021-04
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/184017
Bagayoko, Issiaka; Celli, Marcos Giovani; Romay, Gustavo; Poulicard, Nils; Pinel Galzi, Agnès; et al.; Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus; MDPI AG; Viruses; 13; 5; 4-2021; 1-12
1999-4915
CONICET Digital
CONICET
url http://hdl.handle.net/11336/184017
identifier_str_mv Bagayoko, Issiaka; Celli, Marcos Giovani; Romay, Gustavo; Poulicard, Nils; Pinel Galzi, Agnès; et al.; Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus benyvirus; MDPI AG; Viruses; 13; 5; 4-2021; 1-12
1999-4915
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/1999-4915/13/5/737
info:eu-repo/semantics/altIdentifier/doi/10.3390/v13050737
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv MDPI AG
publisher.none.fl_str_mv MDPI AG
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.22299

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