Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus

Autores
Bagayoko, Issiaka; Celli, Marcos Giovani; Romay, Gustavo; Poulicard, Nils; Pinel-Galzi, Agnès; Julian, Charlotte; Filloux, Denis; Roumagnac, Philippe; Sérémé, Drissa; Bragard, Claude; Hébrard, Eugénie
Año de publicación
2021
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus Benyvirus
Instituto de Patología Vegetal
Fil: Bagayoko, Issiaka. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; Bélgica
Fil: Celli, Marcos Giovani. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
Fil: Celli, Marcos Giovani. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Romay, Gustavo. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; Bélgica
Fil: Poulicard, Nils. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Pinel-Galzi, Agnès. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Julian, Charlotte. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Julian, Charlotte. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); Francia
Fil: Filloux, Denis. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Filloux, Denis. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); Francia
Fil: Roumagnac, Philippe. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Roumagnac, Philippe. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); Francia
Fil: Sérémé, Drissa. Institut de l’Environnement et de Recherches Agricoles. Laboratoire de Laboratoire de Virologie et de Biotechnologies Végétales (INERA); Burkina Faso
Fil: Bragard, Claude. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; Bélgica
Fil: Hébrard, Eugénie. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fuente
Viruses 13 (5) : 737 (May 2021)
Materia
Recombination
Rice Stripe Virus
Arroz
Enfermedades de las Plantas
Recombinación
Rice
Plant Diseases
RSNV
Benyvirus
Virus del Rayado del Arroz
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
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network_name_str INTA Digital (INTA)
spelling Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus BenyvirusBagayoko, IssiakaCelli, Marcos GiovaniRomay, GustavoPoulicard, NilsPinel-Galzi, AgnèsJulian, CharlotteFilloux, DenisRoumagnac, PhilippeSérémé, DrissaBragard, ClaudeHébrard, EugénieRecombinationRice Stripe VirusArrozEnfermedades de las PlantasRecombinaciónRicePlant DiseasesRSNVBenyvirusVirus del Rayado del ArrozThe rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus BenyvirusInstituto de Patología VegetalFil: Bagayoko, Issiaka. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; BélgicaFil: Celli, Marcos Giovani. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); ArgentinaFil: Celli, Marcos Giovani. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; ArgentinaFil: Romay, Gustavo. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; BélgicaFil: Poulicard, Nils. Université de Montpellier. Plant Health Institute (PHIM); FranciaFil: Pinel-Galzi, Agnès. Université de Montpellier. Plant Health Institute (PHIM); FranciaFil: Julian, Charlotte. Université de Montpellier. Plant Health Institute (PHIM); FranciaFil: Julian, Charlotte. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); FranciaFil: Filloux, Denis. Université de Montpellier. Plant Health Institute (PHIM); FranciaFil: Filloux, Denis. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); FranciaFil: Roumagnac, Philippe. Université de Montpellier. Plant Health Institute (PHIM); FranciaFil: Roumagnac, Philippe. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); FranciaFil: Sérémé, Drissa. Institut de l’Environnement et de Recherches Agricoles. Laboratoire de Laboratoire de Virologie et de Biotechnologies Végétales (INERA); Burkina FasoFil: Bragard, Claude. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; BélgicaFil: Hébrard, Eugénie. Université de Montpellier. Plant Health Institute (PHIM); FranciaMDPI2021-10-18T10:41:43Z2021-10-18T10:41:43Z2021-04-23info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/10505https://www.mdpi.com/1999-4915/13/5/7371999-4915 (online)https://doi.org/10.3390/v13050737Viruses 13 (5) : 737 (May 2021)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-10-16T09:30:15Zoai:localhost:20.500.12123/10505instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-10-16 09:30:15.936INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
title Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
spellingShingle Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
Bagayoko, Issiaka
Recombination
Rice Stripe Virus
Arroz
Enfermedades de las Plantas
Recombinación
Rice
Plant Diseases
RSNV
Benyvirus
Virus del Rayado del Arroz
title_short Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
title_full Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
title_fullStr Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
title_full_unstemmed Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
title_sort Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
dc.creator.none.fl_str_mv Bagayoko, Issiaka
Celli, Marcos Giovani
Romay, Gustavo
Poulicard, Nils
Pinel-Galzi, Agnès
Julian, Charlotte
Filloux, Denis
Roumagnac, Philippe
Sérémé, Drissa
Bragard, Claude
Hébrard, Eugénie
author Bagayoko, Issiaka
author_facet Bagayoko, Issiaka
Celli, Marcos Giovani
Romay, Gustavo
Poulicard, Nils
Pinel-Galzi, Agnès
Julian, Charlotte
Filloux, Denis
Roumagnac, Philippe
Sérémé, Drissa
Bragard, Claude
Hébrard, Eugénie
author_role author
author2 Celli, Marcos Giovani
Romay, Gustavo
Poulicard, Nils
Pinel-Galzi, Agnès
Julian, Charlotte
Filloux, Denis
Roumagnac, Philippe
Sérémé, Drissa
Bragard, Claude
Hébrard, Eugénie
author2_role author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Recombination
Rice Stripe Virus
Arroz
Enfermedades de las Plantas
Recombinación
Rice
Plant Diseases
RSNV
Benyvirus
Virus del Rayado del Arroz
topic Recombination
Rice Stripe Virus
Arroz
Enfermedades de las Plantas
Recombinación
Rice
Plant Diseases
RSNV
Benyvirus
Virus del Rayado del Arroz
dc.description.none.fl_txt_mv The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus Benyvirus
Instituto de Patología Vegetal
Fil: Bagayoko, Issiaka. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; Bélgica
Fil: Celli, Marcos Giovani. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
Fil: Celli, Marcos Giovani. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Romay, Gustavo. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; Bélgica
Fil: Poulicard, Nils. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Pinel-Galzi, Agnès. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Julian, Charlotte. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Julian, Charlotte. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); Francia
Fil: Filloux, Denis. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Filloux, Denis. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); Francia
Fil: Roumagnac, Philippe. Université de Montpellier. Plant Health Institute (PHIM); Francia
Fil: Roumagnac, Philippe. Campus International de Montferrier-Baillarguet (CIRAD, UMR PHIM); Francia
Fil: Sérémé, Drissa. Institut de l’Environnement et de Recherches Agricoles. Laboratoire de Laboratoire de Virologie et de Biotechnologies Végétales (INERA); Burkina Faso
Fil: Bragard, Claude. Université Catholique de Louvain. Earth and Life Institute, Applied Microbiology-Phytopathology; Bélgica
Fil: Hébrard, Eugénie. Université de Montpellier. Plant Health Institute (PHIM); Francia
description The rice stripe necrosis virus (RSNV) has been reported to infect rice in several countries in Africa and South America, but limited genomic data are currently publicly available. Here, eleven RSNV genomes were entirely sequenced, including the first corpus of RSNV genomes of African isolates. The genetic variability was differently distributed along the two genomic segments. The segment RNA1, within which clusters of polymorphisms were identified, showed a higher nucleotidic variability than did the beet necrotic yellow vein virus (BNYVV) RNA1 segment. The diversity patterns of both viruses were similar in the RNA2 segment, except for an in-frame insertion of 243 nucleotides located in the RSNV tgbp1 gene. Recombination events were detected into RNA1 and RNA2 segments, in particular in the two most divergent RSNV isolates from Colombia and Sierra Leone. In contrast to BNYVV, the RSNV molecular diversity had a geographical structure with two main RSNV lineages distributed in America and in Africa. Our data on the genetic diversity of RSNV revealed unexpected differences with BNYVV suggesting a complex evolutionary history of the genus Benyvirus
publishDate 2021
dc.date.none.fl_str_mv 2021-10-18T10:41:43Z
2021-10-18T10:41:43Z
2021-04-23
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/10505
https://www.mdpi.com/1999-4915/13/5/737
1999-4915 (online)
https://doi.org/10.3390/v13050737
url http://hdl.handle.net/20.500.12123/10505
https://www.mdpi.com/1999-4915/13/5/737
https://doi.org/10.3390/v13050737
identifier_str_mv 1999-4915 (online)
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv Viruses 13 (5) : 737 (May 2021)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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