Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species

Autores
Mendoza, Ángela María; Torres, María Fernanda; Paz, Andrea; Trujillo Arias, Natalia; López Alvarez, Diana; Sierra, Socorro; Forero, Fernando; Gonzalez, Mailyn A.
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Colombia is the country with the largest number of bird species worldwide, yet its avifauna is seriously threatened by habitat degradation and poaching. We built a DNA barcode library of nearly half of the bird species listed in the CITES appendices for Colombia, thereby constructing a species identification reference that will help in global efforts for controlling illegal species trade. We obtained the COI barcode sequence of 151 species based on 281 samples, representing 46% of CITES bird species registered for Colombia. The species analysed belong to nine families, where Trochilidae and Psittacidae are the most abundant ones. We sequenced for the first time the DNA barcode of 47 species, mainly hummingbirds endemic of the Northern Andes region. We found a correct match between morphological and genetic identification for 86–92% of the species analysed, depending on the cluster analysis performed (BIN, ABGD and TaxonDNA). Additionally, we identified eleven cases of high intraspecific divergence based on K2P genetic distances (up to 14.61%) that could reflect cryptic diversity. In these cases, the specimens were collected in geographically distant sites such as different mountain systems, opposite flanks of the mountain or different elevations. Likewise, we found two cases of possible hybridization and incomplete lineage sorting. This survey constitutes the first attempt to build the DNA barcode library of endangered bird species in Colombia establishing as a reference for management programs of illegal species trade, and providing major insights of phylogeographic structure that can guide future taxonomic research.
Fil: Mendoza, Ángela María. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
Fil: Torres, María Fernanda. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. University of Edinburgh; Reino Unido. The Royal Botanic Garden Edinburgh; Reino Unido
Fil: Paz, Andrea. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. City University of New York; Estados Unidos
Fil: Trujillo Arias, Natalia. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: López Alvarez, Diana. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. Universidad de Zaragoza; España
Fil: Sierra, Socorro. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
Fil: Forero, Fernando. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
Fil: Gonzalez, Mailyn A.. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
Materia
Cytochrome Coxidase Subunit 1
Dna Barcoding
Cites
Colombia
Trochilidae
Psittacidae
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/46631
Acceder
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network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird speciesMendoza, Ángela MaríaTorres, María FernandaPaz, AndreaTrujillo Arias, NataliaLópez Alvarez, DianaSierra, SocorroForero, FernandoGonzalez, Mailyn A.Cytochrome Coxidase Subunit 1Dna BarcodingCitesColombiaTrochilidaePsittacidaehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Colombia is the country with the largest number of bird species worldwide, yet its avifauna is seriously threatened by habitat degradation and poaching. We built a DNA barcode library of nearly half of the bird species listed in the CITES appendices for Colombia, thereby constructing a species identification reference that will help in global efforts for controlling illegal species trade. We obtained the COI barcode sequence of 151 species based on 281 samples, representing 46% of CITES bird species registered for Colombia. The species analysed belong to nine families, where Trochilidae and Psittacidae are the most abundant ones. We sequenced for the first time the DNA barcode of 47 species, mainly hummingbirds endemic of the Northern Andes region. We found a correct match between morphological and genetic identification for 86–92% of the species analysed, depending on the cluster analysis performed (BIN, ABGD and TaxonDNA). Additionally, we identified eleven cases of high intraspecific divergence based on K2P genetic distances (up to 14.61%) that could reflect cryptic diversity. In these cases, the specimens were collected in geographically distant sites such as different mountain systems, opposite flanks of the mountain or different elevations. Likewise, we found two cases of possible hybridization and incomplete lineage sorting. This survey constitutes the first attempt to build the DNA barcode library of endangered bird species in Colombia establishing as a reference for management programs of illegal species trade, and providing major insights of phylogeographic structure that can guide future taxonomic research.Fil: Mendoza, Ángela María. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; ColombiaFil: Torres, María Fernanda. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. University of Edinburgh; Reino Unido. The Royal Botanic Garden Edinburgh; Reino UnidoFil: Paz, Andrea. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. City University of New York; Estados UnidosFil: Trujillo Arias, Natalia. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: López Alvarez, Diana. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. Universidad de Zaragoza; EspañaFil: Sierra, Socorro. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; ColombiaFil: Forero, Fernando. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; ColombiaFil: Gonzalez, Mailyn A.. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; ColombiaWiley Blackwell Publishing, Inc2016-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/46631Mendoza, Ángela María; Torres, María Fernanda; Paz, Andrea; Trujillo Arias, Natalia; López Alvarez, Diana; et al.; Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species; Wiley Blackwell Publishing, Inc; Molecular Ecology Resources; 16; 4; 7-2016; 862-8731755-098XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1111/1755-0998.12515info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/1755-0998.12515info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-17T10:58:35Zoai:ri.conicet.gov.ar:11336/46631instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-17 10:58:35.843CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
title Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
spellingShingle Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
Mendoza, Ángela María
Cytochrome Coxidase Subunit 1
Dna Barcoding
Cites
Colombia
Trochilidae
Psittacidae
title_short Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
title_full Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
title_fullStr Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
title_full_unstemmed Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
title_sort Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species
dc.creator.none.fl_str_mv Mendoza, Ángela María
Torres, María Fernanda
Paz, Andrea
Trujillo Arias, Natalia
López Alvarez, Diana
Sierra, Socorro
Forero, Fernando
Gonzalez, Mailyn A.
author Mendoza, Ángela María
author_facet Mendoza, Ángela María
Torres, María Fernanda
Paz, Andrea
Trujillo Arias, Natalia
López Alvarez, Diana
Sierra, Socorro
Forero, Fernando
Gonzalez, Mailyn A.
author_role author
author2 Torres, María Fernanda
Paz, Andrea
Trujillo Arias, Natalia
López Alvarez, Diana
Sierra, Socorro
Forero, Fernando
Gonzalez, Mailyn A.
author2_role author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Cytochrome Coxidase Subunit 1
Dna Barcoding
Cites
Colombia
Trochilidae
Psittacidae
topic Cytochrome Coxidase Subunit 1
Dna Barcoding
Cites
Colombia
Trochilidae
Psittacidae
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Colombia is the country with the largest number of bird species worldwide, yet its avifauna is seriously threatened by habitat degradation and poaching. We built a DNA barcode library of nearly half of the bird species listed in the CITES appendices for Colombia, thereby constructing a species identification reference that will help in global efforts for controlling illegal species trade. We obtained the COI barcode sequence of 151 species based on 281 samples, representing 46% of CITES bird species registered for Colombia. The species analysed belong to nine families, where Trochilidae and Psittacidae are the most abundant ones. We sequenced for the first time the DNA barcode of 47 species, mainly hummingbirds endemic of the Northern Andes region. We found a correct match between morphological and genetic identification for 86–92% of the species analysed, depending on the cluster analysis performed (BIN, ABGD and TaxonDNA). Additionally, we identified eleven cases of high intraspecific divergence based on K2P genetic distances (up to 14.61%) that could reflect cryptic diversity. In these cases, the specimens were collected in geographically distant sites such as different mountain systems, opposite flanks of the mountain or different elevations. Likewise, we found two cases of possible hybridization and incomplete lineage sorting. This survey constitutes the first attempt to build the DNA barcode library of endangered bird species in Colombia establishing as a reference for management programs of illegal species trade, and providing major insights of phylogeographic structure that can guide future taxonomic research.
Fil: Mendoza, Ángela María. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
Fil: Torres, María Fernanda. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. University of Edinburgh; Reino Unido. The Royal Botanic Garden Edinburgh; Reino Unido
Fil: Paz, Andrea. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. City University of New York; Estados Unidos
Fil: Trujillo Arias, Natalia. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: López Alvarez, Diana. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia. Universidad de Zaragoza; España
Fil: Sierra, Socorro. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
Fil: Forero, Fernando. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
Fil: Gonzalez, Mailyn A.. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt; Colombia
description Colombia is the country with the largest number of bird species worldwide, yet its avifauna is seriously threatened by habitat degradation and poaching. We built a DNA barcode library of nearly half of the bird species listed in the CITES appendices for Colombia, thereby constructing a species identification reference that will help in global efforts for controlling illegal species trade. We obtained the COI barcode sequence of 151 species based on 281 samples, representing 46% of CITES bird species registered for Colombia. The species analysed belong to nine families, where Trochilidae and Psittacidae are the most abundant ones. We sequenced for the first time the DNA barcode of 47 species, mainly hummingbirds endemic of the Northern Andes region. We found a correct match between morphological and genetic identification for 86–92% of the species analysed, depending on the cluster analysis performed (BIN, ABGD and TaxonDNA). Additionally, we identified eleven cases of high intraspecific divergence based on K2P genetic distances (up to 14.61%) that could reflect cryptic diversity. In these cases, the specimens were collected in geographically distant sites such as different mountain systems, opposite flanks of the mountain or different elevations. Likewise, we found two cases of possible hybridization and incomplete lineage sorting. This survey constitutes the first attempt to build the DNA barcode library of endangered bird species in Colombia establishing as a reference for management programs of illegal species trade, and providing major insights of phylogeographic structure that can guide future taxonomic research.
publishDate 2016
dc.date.none.fl_str_mv 2016-07
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/46631
Mendoza, Ángela María; Torres, María Fernanda; Paz, Andrea; Trujillo Arias, Natalia; López Alvarez, Diana; et al.; Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species; Wiley Blackwell Publishing, Inc; Molecular Ecology Resources; 16; 4; 7-2016; 862-873
1755-098X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/46631
identifier_str_mv Mendoza, Ángela María; Torres, María Fernanda; Paz, Andrea; Trujillo Arias, Natalia; López Alvarez, Diana; et al.; Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species; Wiley Blackwell Publishing, Inc; Molecular Ecology Resources; 16; 4; 7-2016; 862-873
1755-098X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1111/1755-0998.12515
info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/1755-0998.12515
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Wiley Blackwell Publishing, Inc
publisher.none.fl_str_mv Wiley Blackwell Publishing, Inc
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.000565

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