The genome of the stress-tolerant wild tomato species Solanum pennellii

Autores: Bolger, Anthony; Scossa, Federico; Bolger, Marie E.; Lanz, Christa; Maumus, Florian; Tohge, Takayuki; Quesneville, Hadi; Alseekh, Saleh; Sørensen, Iben; Lichtenstein, Gabriela; Fich, Eric A.; Conte, Mariana; Keller, Heike; Schneeberger, Korbinian; Schwacke, Rainer; Ofner, Itai; Vrebalov, Julia; Xu, Yimin; Osorio, Sonia; Aflitos, Saulo Alves; Schijlen, Elio; Jiménez Goméz, José M.; Ryngajllo, Malgorzata; Kimura, Seisuke; Kumar, Ravi; Koenig, Daniel; Headland, Lauren R.; Maloof, Julin N.; Sinha, Neelima; Van Ham, Roeland C. H. J.
Año de publicación: 2014
Idioma: inglés
Tipo de recurso: artículo
Estado: versión publicada
Descripción: Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.
Fil: Bolger, Anthony. Aachen University; Alemania. Institut Max Planck fur Molekulare Physiologie; Alemania
Fil: Scossa, Federico. Institut Max Planck fur Molekulare Physiologie; Alemania. Consiglio per la Ricerca in Agricoltura e l'Analisi del l'Economía Agraria; Italia
Fil: Bolger, Marie E.. Institut Max Planck fur Molekulare Physiologie; Alemania. Forschungszentrum Jülich; Alemania
Fil: Lanz, Christa. Institut Max Planck fur Molekulare Physiologie; Alemania
Fil: Maumus, Florian. Institut National de la Recherche Agronomique; Francia
Fil: Tohge, Takayuki. Institut Max Planck fur Molekulare Physiologie; Alemania
Fil: Quesneville, Hadi. Institut National de la Recherche Agronomique; Francia
Fil: Alseekh, Saleh. Institut Max Planck fur Molekulare Physiologie; Alemania
Fil: Sørensen, Iben. Cornell University; Estados Unidos
Fil: Lichtenstein, Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina
Fil: Fich, Eric A.. Cornell University; Estados Unidos
Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas; Argentina
Fil: Keller, Heike. Institut Max Planck fur Molekulare Physiologie; Alemania
Fil: Schneeberger, Korbinian. Institut Max Planck fur Molekulare Physiologie; Alemania. Max Planck Institute for Plant Breeding Research; Alemania
Fil: Schwacke, Rainer. Institut Max Planck fur Molekulare Physiologie; Alemania. Forschungszentrum Jülich; Alemania
Fil: Ofner, Itai. The Hebrew University of Jerusalem; Israel
Fil: Vrebalov, Julia. Cornell University; Estados Unidos
Fil: Xu, Yimin. Cornell University; Estados Unidos
Fil: Osorio, Sonia. Institut Max Planck fur Molekulare Physiologie; Alemania. Universidad de Málaga; España
Fil: Aflitos, Saulo Alves. University of Agriculture Wageningen; Países Bajos
Fil: Schijlen, Elio. University of Agriculture Wageningen; Países Bajos
Fil: Jiménez Goméz, José M.. Max Planck Institute for Plant Breeding Research; Alemania. Institut National de la Recherche Agronomique; Francia
Fil: Ryngajllo, Malgorzata. Institut Max Planck fur Molekulare Physiologie; Alemania
Fil: Kimura, Seisuke. University of California at Davis; Estados Unidos
Fil: Kumar, Ravi. University of California at Davis; Estados Unidos
Fil: Koenig, Daniel. Institut Max Planck fur Molekulare Physiologie; Alemania. University of California at Davis; Estados Unidos
Fil: Headland, Lauren R.. University of California at Davis; Estados Unidos
Fil: Maloof, Julin N.. University of California at Davis; Estados Unidos
Fil: Sinha, Neelima. University of California at Davis; Estados Unidos
Fil: Van Ham, Roeland C. H. J.. University of Agriculture Wageningen; Países Bajos
Materia: Solanum Pennellii
Solanum Lycopersicum
Genoma
Illumina
Nivel de accesibilidad: acceso abierto
Condiciones de uso: https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
Institución: Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador: oai:ri.conicet.gov.ar:11336/157434

Acceder

id	CONICETDig_5581461062698e74aa1586b9704b343e
oai_identifier_str	oai:ri.conicet.gov.ar:11336/157434
network_acronym_str	CONICETDig
repository_id_str	3498
network_name_str	CONICET Digital (CONICET)
spelling	The genome of the stress-tolerant wild tomato species Solanum pennelliiBolger, AnthonyScossa, FedericoBolger, Marie E.Lanz, ChristaMaumus, FlorianTohge, TakayukiQuesneville, HadiAlseekh, SalehSørensen, IbenLichtenstein, GabrielaFich, Eric A.Conte, MarianaKeller, HeikeSchneeberger, KorbinianSchwacke, RainerOfner, ItaiVrebalov, JuliaXu, YiminOsorio, SoniaAflitos, Saulo AlvesSchijlen, ElioJiménez Goméz, José M.Ryngajllo, MalgorzataKimura, SeisukeKumar, RaviKoenig, DanielHeadland, Lauren R.Maloof, Julin N.Sinha, NeelimaVan Ham, Roeland C. H. J.Solanum PennelliiSolanum LycopersicumGenomaIlluminahttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.Fil: Bolger, Anthony. Aachen University; Alemania. Institut Max Planck fur Molekulare Physiologie; AlemaniaFil: Scossa, Federico. Institut Max Planck fur Molekulare Physiologie; Alemania. Consiglio per la Ricerca in Agricoltura e l'Analisi del l'Economía Agraria; ItaliaFil: Bolger, Marie E.. Institut Max Planck fur Molekulare Physiologie; Alemania. Forschungszentrum Jülich; AlemaniaFil: Lanz, Christa. Institut Max Planck fur Molekulare Physiologie; AlemaniaFil: Maumus, Florian. Institut National de la Recherche Agronomique; FranciaFil: Tohge, Takayuki. Institut Max Planck fur Molekulare Physiologie; AlemaniaFil: Quesneville, Hadi. Institut National de la Recherche Agronomique; FranciaFil: Alseekh, Saleh. Institut Max Planck fur Molekulare Physiologie; AlemaniaFil: Sørensen, Iben. Cornell University; Estados UnidosFil: Lichtenstein, Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; ArgentinaFil: Fich, Eric A.. Cornell University; Estados UnidosFil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas; ArgentinaFil: Keller, Heike. Institut Max Planck fur Molekulare Physiologie; AlemaniaFil: Schneeberger, Korbinian. Institut Max Planck fur Molekulare Physiologie; Alemania. Max Planck Institute for Plant Breeding Research; AlemaniaFil: Schwacke, Rainer. Institut Max Planck fur Molekulare Physiologie; Alemania. Forschungszentrum Jülich; AlemaniaFil: Ofner, Itai. The Hebrew University of Jerusalem; IsraelFil: Vrebalov, Julia. Cornell University; Estados UnidosFil: Xu, Yimin. Cornell University; Estados UnidosFil: Osorio, Sonia. Institut Max Planck fur Molekulare Physiologie; Alemania. Universidad de Málaga; EspañaFil: Aflitos, Saulo Alves. University of Agriculture Wageningen; Países BajosFil: Schijlen, Elio. University of Agriculture Wageningen; Países BajosFil: Jiménez Goméz, José M.. Max Planck Institute for Plant Breeding Research; Alemania. Institut National de la Recherche Agronomique; FranciaFil: Ryngajllo, Malgorzata. Institut Max Planck fur Molekulare Physiologie; AlemaniaFil: Kimura, Seisuke. University of California at Davis; Estados UnidosFil: Kumar, Ravi. University of California at Davis; Estados UnidosFil: Koenig, Daniel. Institut Max Planck fur Molekulare Physiologie; Alemania. University of California at Davis; Estados UnidosFil: Headland, Lauren R.. University of California at Davis; Estados UnidosFil: Maloof, Julin N.. University of California at Davis; Estados UnidosFil: Sinha, Neelima. University of California at Davis; Estados UnidosFil: Van Ham, Roeland C. H. J.. University of Agriculture Wageningen; Países BajosNature Publishing Group2014-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/157434Bolger, Anthony; Scossa, Federico; Bolger, Marie E.; Lanz, Christa; Maumus, Florian; et al.; The genome of the stress-tolerant wild tomato species Solanum pennellii; Nature Publishing Group; Nature Genetics; 46; 9-2014; 1034-10381061-40361546-1718CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/ng.3046info:eu-repo/semantics/altIdentifier/doi/10.1038/ng.3046info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:51:54Zoai:ri.conicet.gov.ar:11336/157434instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:51:54.634CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv	The genome of the stress-tolerant wild tomato species Solanum pennellii
title	The genome of the stress-tolerant wild tomato species Solanum pennellii
spellingShingle	The genome of the stress-tolerant wild tomato species Solanum pennellii Bolger, Anthony Solanum Pennellii Solanum Lycopersicum Genoma Illumina
title_short	The genome of the stress-tolerant wild tomato species Solanum pennellii
title_full	The genome of the stress-tolerant wild tomato species Solanum pennellii
title_fullStr	The genome of the stress-tolerant wild tomato species Solanum pennellii
title_full_unstemmed	The genome of the stress-tolerant wild tomato species Solanum pennellii
title_sort	The genome of the stress-tolerant wild tomato species Solanum pennellii
dc.creator.none.fl_str_mv	Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriela Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima Van Ham, Roeland C. H. J.
author	Bolger, Anthony
author_facet	Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriela Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima Van Ham, Roeland C. H. J.
author_role	author
author2	Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriela Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima Van Ham, Roeland C. H. J.
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.subject.none.fl_str_mv	Solanum Pennellii Solanum Lycopersicum Genoma Illumina
topic	Solanum Pennellii Solanum Lycopersicum Genoma Illumina
purl_subject.fl_str_mv	https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv	Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm. Fil: Bolger, Anthony. Aachen University; Alemania. Institut Max Planck fur Molekulare Physiologie; Alemania Fil: Scossa, Federico. Institut Max Planck fur Molekulare Physiologie; Alemania. Consiglio per la Ricerca in Agricoltura e l'Analisi del l'Economía Agraria; Italia Fil: Bolger, Marie E.. Institut Max Planck fur Molekulare Physiologie; Alemania. Forschungszentrum Jülich; Alemania Fil: Lanz, Christa. Institut Max Planck fur Molekulare Physiologie; Alemania Fil: Maumus, Florian. Institut National de la Recherche Agronomique; Francia Fil: Tohge, Takayuki. Institut Max Planck fur Molekulare Physiologie; Alemania Fil: Quesneville, Hadi. Institut National de la Recherche Agronomique; Francia Fil: Alseekh, Saleh. Institut Max Planck fur Molekulare Physiologie; Alemania Fil: Sørensen, Iben. Cornell University; Estados Unidos Fil: Lichtenstein, Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina Fil: Fich, Eric A.. Cornell University; Estados Unidos Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas; Argentina Fil: Keller, Heike. Institut Max Planck fur Molekulare Physiologie; Alemania Fil: Schneeberger, Korbinian. Institut Max Planck fur Molekulare Physiologie; Alemania. Max Planck Institute for Plant Breeding Research; Alemania Fil: Schwacke, Rainer. Institut Max Planck fur Molekulare Physiologie; Alemania. Forschungszentrum Jülich; Alemania Fil: Ofner, Itai. The Hebrew University of Jerusalem; Israel Fil: Vrebalov, Julia. Cornell University; Estados Unidos Fil: Xu, Yimin. Cornell University; Estados Unidos Fil: Osorio, Sonia. Institut Max Planck fur Molekulare Physiologie; Alemania. Universidad de Málaga; España Fil: Aflitos, Saulo Alves. University of Agriculture Wageningen; Países Bajos Fil: Schijlen, Elio. University of Agriculture Wageningen; Países Bajos Fil: Jiménez Goméz, José M.. Max Planck Institute for Plant Breeding Research; Alemania. Institut National de la Recherche Agronomique; Francia Fil: Ryngajllo, Malgorzata. Institut Max Planck fur Molekulare Physiologie; Alemania Fil: Kimura, Seisuke. University of California at Davis; Estados Unidos Fil: Kumar, Ravi. University of California at Davis; Estados Unidos Fil: Koenig, Daniel. Institut Max Planck fur Molekulare Physiologie; Alemania. University of California at Davis; Estados Unidos Fil: Headland, Lauren R.. University of California at Davis; Estados Unidos Fil: Maloof, Julin N.. University of California at Davis; Estados Unidos Fil: Sinha, Neelima. University of California at Davis; Estados Unidos Fil: Van Ham, Roeland C. H. J.. University of Agriculture Wageningen; Países Bajos
description	Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.
publishDate	2014
dc.date.none.fl_str_mv	2014-09
dc.type.none.fl_str_mv	info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo
format	article
status_str	publishedVersion
dc.identifier.none.fl_str_mv	http://hdl.handle.net/11336/157434 Bolger, Anthony; Scossa, Federico; Bolger, Marie E.; Lanz, Christa; Maumus, Florian; et al.; The genome of the stress-tolerant wild tomato species Solanum pennellii; Nature Publishing Group; Nature Genetics; 46; 9-2014; 1034-1038 1061-4036 1546-1718 CONICET Digital CONICET
url	http://hdl.handle.net/11336/157434
identifier_str_mv	Bolger, Anthony; Scossa, Federico; Bolger, Marie E.; Lanz, Christa; Maumus, Florian; et al.; The genome of the stress-tolerant wild tomato species Solanum pennellii; Nature Publishing Group; Nature Genetics; 46; 9-2014; 1034-1038 1061-4036 1546-1718 CONICET Digital CONICET
dc.language.none.fl_str_mv	eng
language	eng
dc.relation.none.fl_str_mv	info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/ng.3046 info:eu-repo/semantics/altIdentifier/doi/10.1038/ng.3046
dc.rights.none.fl_str_mv	info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv	openAccess
rights_invalid_str_mv	https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv	application/pdf application/pdf
dc.publisher.none.fl_str_mv	Nature Publishing Group
publisher.none.fl_str_mv	Nature Publishing Group
dc.source.none.fl_str_mv	reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str	CONICET Digital (CONICET)
collection	CONICET Digital (CONICET)
instname_str	Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv	CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv	dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_	1842269124269441024
score	13.13397

The genome of the stress-tolerant wild tomato species Solanum pennellii

Publicaciones similares