The genome of the stress-tolerant wild tomato species Solanum pennellii
- Autores
- Bolger, Anthony; Scossa, Federico; Bolger, Marie E.; Lanz, Christa; Maumus, Florian; Tohge, Takayuki; Quesneville, Hadi; Alseekh, Saleh; Sørensen, Iben; Lichtenstein, Gabriel; Fich, Eric A.; Conte, Mariana; Keller, Heike; Schneeberger, Korbinian; Schwacke, Rainer; Ofner, Itai; Vrebalov, Julia; Xu, Yimin; Osorio, Sonia; Aflitos, Saulo Alves; Schijlen, Elio; Jiménez-Goméz, José M.; Ryngajllo, Malgorzata; Kimura, Seisuke; Kumar, Ravi; Koenig, Daniel; Headland, Lauren R.; Maloof, Julin N.; Sinha, Neelima; van Ham, Roeland C. H. J.; Lankhorst, René Klein; Mao, Linyong; Vogel, Alexander; Arsova, Borjana; Panstruga, Ralph; Fei, Zhangjun; Rose, Jocelyn K. C.; Zamir, Dani; Carrari, Fernando; Giovannoni, James J.; Weigel, Detlef; Usadel, Björn; Fernie, Alisdair R.
- Año de publicación
- 2014
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.
Instituto de Biotecnología
Fil: Bolger, Anthony. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania
Fil: Bolger, Anthony. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania
Fil: Scossa, Federico. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania
Fil: Scossa, Federico. Centro di Ricerca per l’Orticoltura. Consiglio per la Ricerca e la Sperimentazione in Agricoltura; Italia
Fil: Bolger, Marie E. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania
Fil: Bolger, Marie E. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania
Fil: Lanz, Christa. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania
Fil: Maumus, Florian. Institut National de la Recherche Agronomique (INRA); Francia
Fil: Tohge, Takayuki. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania
Fil: Quesneville, Hadi. Institut National de la Recherche Agronomique (INRA); Francia
Fil: Alseekh, Saleh. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania
Fil: Sørensen, Iben. Cornell University. Department of Plant Biology; Estados Unidos
Fil: Lichtenstein, Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Fich, Eric A. Cornell University. Department of Plant Biology; Estados Unidos
Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Conte, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Keller, Heike. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania
Fil: Schneeberger, Korbinian. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania
Fil: Schneeberger, Korbinian. Max Planck Institute for Plant Breeding Research. Department of Plant Developmental Biology; Alemania
Fil: Schwacke, Rainer. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania
Fil: Schwacke, Rainer. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania
Fil: Ofner, Itai. Hebrew University of Jerusalem. Faculty of Agriculture; Israel
Fil: Vrebalov, Julia. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos
Fil: Xu, Yimin. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos
Fil: Osorio, Sonia. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania
Fil: Osorio, Sonia. University of Málaga. Department of Molecular Biology and Biochemistry. Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora"; España
Fil: Aflitos, Saulo Alves. Wageningen University and Research Centre. Plant Research International; Países Bajos
Fil: Schijlen, Elio. Wageningen University and Research Centre. Plant Research International; Países Bajos
Fil: Jiménez-Goméz, José M. Max Planck Institute for Plant Breeding Research. Department of Plant Breeding and Genetics; Alemania
Fil: Jiménez-Goméz, José M. Institut National de la Recherche Agronomique (INRA). Institut Jean-Pierre Bourgin; Francia
Fil: Ryngajllo, Malgorzata. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania
Fil: Kimura, Seisuke. University of California. Department of Plant Biology; Estados Unidos
Fil: Kumar, Ravi. University of California. Department of Plant Biology; Estados Unidos
Fil: Koenig, Daniel. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania
Fil: Koenig, Daniel. University of California. Department of Plant Biology; Estados Unidos
Fil: Headland, Lauren R. University of California. Department of Plant Biology; Estados Unidos
Fil: Maloof, Julin N. University of California. Department of Plant Biology; Estados Unidos
Fil: Sinha, Neelima. University of California. Department of Plant Biology; Estados Unidos
Fil: van Ham, Roeland C. H. J. Wageningen University and Research Centre. Plant Research International; Países Bajos
Fil: Lankhorst, René Klein. Wageningen University and Research Centre. Plant Research International; Países Bajos
Fil: Mao, Linyong. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos
Fil: Vogel, Alexander. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania
Fil: Arsova, Borjana. Heinrich Heine Universität. Entwicklungs und Molekularbiologie der Pflanzen; Alemania
Fil: Panstruga, Ralph. Rheinisch-Westfälische Technische Hochschule Aachen University. Unit of Plant Molecular Cell Biology. Institute for Biology I; Alemania
Fil: Fei, Zhangjun. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos
Fil: Fei, Zhangjun. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados Unidos
Fil: Rose, Jocelyn K. C. Cornell University. Department of Plant Biology; Estados Unidos
Fil: Zamir, Dani. Hebrew University of Jerusalem. Faculty of Agriculture; Israel
Fil: Carrari, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Carrari, Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina
Fil: Giovannoni, James J. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos
Fil: Giovannoni, James J. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados Unidos
Fil: Weigel, Detlef. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania
Fil: Usadel, Björn. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania
Fil: Usadel, Björn. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania
Fil: Usadel, Björn. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania
Fil: Fernie, Alisdair R. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania - Fuente
- Nature Genetics 46 (9) : 1034-1039 (Septiembre 2014)
- Materia
-
Genomes
Stress
Tolerance
Tomatoes
Genetic Maps
Germplasm
Genomas
Estres
Tolerancia
Solanum pennellii
Tomate
Mapas Genéticos
Germoplasma
Candidate Genes
Genes Candidatos - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- http://creativecommons.org/licenses/by-nc-sa/4.0/
- Repositorio
.jpg)
- Institución
- Instituto Nacional de Tecnología Agropecuaria
- OAI Identificador
- oai:localhost:20.500.12123/12311
Ver los metadatos del registro completo
| id |
INTADig_95159fe81797b296bafc0c8855276962 |
|---|---|
| oai_identifier_str |
oai:localhost:20.500.12123/12311 |
| network_acronym_str |
INTADig |
| repository_id_str |
l |
| network_name_str |
INTA Digital (INTA) |
| spelling |
The genome of the stress-tolerant wild tomato species Solanum pennelliiBolger, AnthonyScossa, FedericoBolger, Marie E.Lanz, ChristaMaumus, FlorianTohge, TakayukiQuesneville, HadiAlseekh, SalehSørensen, IbenLichtenstein, GabrielFich, Eric A.Conte, MarianaKeller, HeikeSchneeberger, KorbinianSchwacke, RainerOfner, ItaiVrebalov, JuliaXu, YiminOsorio, SoniaAflitos, Saulo AlvesSchijlen, ElioJiménez-Goméz, José M.Ryngajllo, MalgorzataKimura, SeisukeKumar, RaviKoenig, DanielHeadland, Lauren R.Maloof, Julin N.Sinha, Neelimavan Ham, Roeland C. H. J.Lankhorst, René KleinMao, LinyongVogel, AlexanderArsova, BorjanaPanstruga, RalphFei, ZhangjunRose, Jocelyn K. C.Zamir, DaniCarrari, FernandoGiovannoni, James J.Weigel, DetlefUsadel, BjörnFernie, Alisdair R.GenomesStressToleranceTomatoesGenetic MapsGermplasmGenomasEstresToleranciaSolanum pennelliiTomateMapas GenéticosGermoplasmaCandidate GenesGenes CandidatosSolanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.Instituto de BiotecnologíaFil: Bolger, Anthony. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; AlemaniaFil: Bolger, Anthony. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; AlemaniaFil: Scossa, Federico. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; AlemaniaFil: Scossa, Federico. Centro di Ricerca per l’Orticoltura. Consiglio per la Ricerca e la Sperimentazione in Agricoltura; ItaliaFil: Bolger, Marie E. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; AlemaniaFil: Bolger, Marie E. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); AlemaniaFil: Lanz, Christa. Max Planck Institute for Developmental Biology. Department of Molecular Biology; AlemaniaFil: Maumus, Florian. Institut National de la Recherche Agronomique (INRA); FranciaFil: Tohge, Takayuki. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; AlemaniaFil: Quesneville, Hadi. Institut National de la Recherche Agronomique (INRA); FranciaFil: Alseekh, Saleh. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; AlemaniaFil: Sørensen, Iben. Cornell University. Department of Plant Biology; Estados UnidosFil: Lichtenstein, Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Fich, Eric A. Cornell University. Department of Plant Biology; Estados UnidosFil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Conte, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Keller, Heike. Max Planck Institute for Developmental Biology. Department of Molecular Biology; AlemaniaFil: Schneeberger, Korbinian. Max Planck Institute for Developmental Biology. Department of Molecular Biology; AlemaniaFil: Schneeberger, Korbinian. Max Planck Institute for Plant Breeding Research. Department of Plant Developmental Biology; AlemaniaFil: Schwacke, Rainer. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; AlemaniaFil: Schwacke, Rainer. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); AlemaniaFil: Ofner, Itai. Hebrew University of Jerusalem. Faculty of Agriculture; IsraelFil: Vrebalov, Julia. Cornell University. Boyce Thompson Institute for Plant Research; Estados UnidosFil: Xu, Yimin. Cornell University. Boyce Thompson Institute for Plant Research; Estados UnidosFil: Osorio, Sonia. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; AlemaniaFil: Osorio, Sonia. University of Málaga. Department of Molecular Biology and Biochemistry. Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora"; EspañaFil: Aflitos, Saulo Alves. Wageningen University and Research Centre. Plant Research International; Países BajosFil: Schijlen, Elio. Wageningen University and Research Centre. Plant Research International; Países BajosFil: Jiménez-Goméz, José M. Max Planck Institute for Plant Breeding Research. Department of Plant Breeding and Genetics; AlemaniaFil: Jiménez-Goméz, José M. Institut National de la Recherche Agronomique (INRA). Institut Jean-Pierre Bourgin; FranciaFil: Ryngajllo, Malgorzata. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; AlemaniaFil: Kimura, Seisuke. University of California. Department of Plant Biology; Estados UnidosFil: Kumar, Ravi. University of California. Department of Plant Biology; Estados UnidosFil: Koenig, Daniel. Max Planck Institute for Developmental Biology. Department of Molecular Biology; AlemaniaFil: Koenig, Daniel. University of California. Department of Plant Biology; Estados UnidosFil: Headland, Lauren R. University of California. Department of Plant Biology; Estados UnidosFil: Maloof, Julin N. University of California. Department of Plant Biology; Estados UnidosFil: Sinha, Neelima. University of California. Department of Plant Biology; Estados UnidosFil: van Ham, Roeland C. H. J. Wageningen University and Research Centre. Plant Research International; Países BajosFil: Lankhorst, René Klein. Wageningen University and Research Centre. Plant Research International; Países BajosFil: Mao, Linyong. Cornell University. Boyce Thompson Institute for Plant Research; Estados UnidosFil: Vogel, Alexander. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; AlemaniaFil: Arsova, Borjana. Heinrich Heine Universität. Entwicklungs und Molekularbiologie der Pflanzen; AlemaniaFil: Panstruga, Ralph. Rheinisch-Westfälische Technische Hochschule Aachen University. Unit of Plant Molecular Cell Biology. Institute for Biology I; AlemaniaFil: Fei, Zhangjun. Cornell University. Boyce Thompson Institute for Plant Research; Estados UnidosFil: Fei, Zhangjun. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados UnidosFil: Rose, Jocelyn K. C. Cornell University. Department of Plant Biology; Estados UnidosFil: Zamir, Dani. Hebrew University of Jerusalem. Faculty of Agriculture; IsraelFil: Carrari, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Carrari, Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Fisiología, Biología Molecular y Neurociencias; ArgentinaFil: Giovannoni, James J. Cornell University. Boyce Thompson Institute for Plant Research; Estados UnidosFil: Giovannoni, James J. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados UnidosFil: Weigel, Detlef. Max Planck Institute for Developmental Biology. Department of Molecular Biology; AlemaniaFil: Usadel, Björn. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; AlemaniaFil: Usadel, Björn. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; AlemaniaFil: Usadel, Björn. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); AlemaniaFil: Fernie, Alisdair R. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; AlemaniaNature Publishing Group2022-07-12T17:26:07Z2022-07-12T17:26:07Z2014-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/12311https://www.nature.com/articles/ng.30461546-1718https://doi.org/10.1038/ng.3046Nature Genetics 46 (9) : 1034-1039 (Septiembre 2014)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-04T09:49:27Zoai:localhost:20.500.12123/12311instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:49:27.625INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse |
| dc.title.none.fl_str_mv |
The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title |
The genome of the stress-tolerant wild tomato species Solanum pennellii |
| spellingShingle |
The genome of the stress-tolerant wild tomato species Solanum pennellii Bolger, Anthony Genomes Stress Tolerance Tomatoes Genetic Maps Germplasm Genomas Estres Tolerancia Solanum pennellii Tomate Mapas Genéticos Germoplasma Candidate Genes Genes Candidatos |
| title_short |
The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_full |
The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_fullStr |
The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_full_unstemmed |
The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_sort |
The genome of the stress-tolerant wild tomato species Solanum pennellii |
| dc.creator.none.fl_str_mv |
Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriel Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez-Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima van Ham, Roeland C. H. J. Lankhorst, René Klein Mao, Linyong Vogel, Alexander Arsova, Borjana Panstruga, Ralph Fei, Zhangjun Rose, Jocelyn K. C. Zamir, Dani Carrari, Fernando Giovannoni, James J. Weigel, Detlef Usadel, Björn Fernie, Alisdair R. |
| author |
Bolger, Anthony |
| author_facet |
Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriel Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez-Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima van Ham, Roeland C. H. J. Lankhorst, René Klein Mao, Linyong Vogel, Alexander Arsova, Borjana Panstruga, Ralph Fei, Zhangjun Rose, Jocelyn K. C. Zamir, Dani Carrari, Fernando Giovannoni, James J. Weigel, Detlef Usadel, Björn Fernie, Alisdair R. |
| author_role |
author |
| author2 |
Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriel Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez-Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima van Ham, Roeland C. H. J. Lankhorst, René Klein Mao, Linyong Vogel, Alexander Arsova, Borjana Panstruga, Ralph Fei, Zhangjun Rose, Jocelyn K. C. Zamir, Dani Carrari, Fernando Giovannoni, James J. Weigel, Detlef Usadel, Björn Fernie, Alisdair R. |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.subject.none.fl_str_mv |
Genomes Stress Tolerance Tomatoes Genetic Maps Germplasm Genomas Estres Tolerancia Solanum pennellii Tomate Mapas Genéticos Germoplasma Candidate Genes Genes Candidatos |
| topic |
Genomes Stress Tolerance Tomatoes Genetic Maps Germplasm Genomas Estres Tolerancia Solanum pennellii Tomate Mapas Genéticos Germoplasma Candidate Genes Genes Candidatos |
| dc.description.none.fl_txt_mv |
Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm. Instituto de Biotecnología Fil: Bolger, Anthony. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Bolger, Anthony. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania Fil: Scossa, Federico. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Scossa, Federico. Centro di Ricerca per l’Orticoltura. Consiglio per la Ricerca e la Sperimentazione in Agricoltura; Italia Fil: Bolger, Marie E. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Bolger, Marie E. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania Fil: Lanz, Christa. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Maumus, Florian. Institut National de la Recherche Agronomique (INRA); Francia Fil: Tohge, Takayuki. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Quesneville, Hadi. Institut National de la Recherche Agronomique (INRA); Francia Fil: Alseekh, Saleh. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Sørensen, Iben. Cornell University. Department of Plant Biology; Estados Unidos Fil: Lichtenstein, Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Fich, Eric A. Cornell University. Department of Plant Biology; Estados Unidos Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Conte, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Keller, Heike. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Schneeberger, Korbinian. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Schneeberger, Korbinian. Max Planck Institute for Plant Breeding Research. Department of Plant Developmental Biology; Alemania Fil: Schwacke, Rainer. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Schwacke, Rainer. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania Fil: Ofner, Itai. Hebrew University of Jerusalem. Faculty of Agriculture; Israel Fil: Vrebalov, Julia. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Xu, Yimin. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Osorio, Sonia. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Osorio, Sonia. University of Málaga. Department of Molecular Biology and Biochemistry. Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora"; España Fil: Aflitos, Saulo Alves. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Schijlen, Elio. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Jiménez-Goméz, José M. Max Planck Institute for Plant Breeding Research. Department of Plant Breeding and Genetics; Alemania Fil: Jiménez-Goméz, José M. Institut National de la Recherche Agronomique (INRA). Institut Jean-Pierre Bourgin; Francia Fil: Ryngajllo, Malgorzata. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Kimura, Seisuke. University of California. Department of Plant Biology; Estados Unidos Fil: Kumar, Ravi. University of California. Department of Plant Biology; Estados Unidos Fil: Koenig, Daniel. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Koenig, Daniel. University of California. Department of Plant Biology; Estados Unidos Fil: Headland, Lauren R. University of California. Department of Plant Biology; Estados Unidos Fil: Maloof, Julin N. University of California. Department of Plant Biology; Estados Unidos Fil: Sinha, Neelima. University of California. Department of Plant Biology; Estados Unidos Fil: van Ham, Roeland C. H. J. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Lankhorst, René Klein. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Mao, Linyong. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Vogel, Alexander. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania Fil: Arsova, Borjana. Heinrich Heine Universität. Entwicklungs und Molekularbiologie der Pflanzen; Alemania Fil: Panstruga, Ralph. Rheinisch-Westfälische Technische Hochschule Aachen University. Unit of Plant Molecular Cell Biology. Institute for Biology I; Alemania Fil: Fei, Zhangjun. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Fei, Zhangjun. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados Unidos Fil: Rose, Jocelyn K. C. Cornell University. Department of Plant Biology; Estados Unidos Fil: Zamir, Dani. Hebrew University of Jerusalem. Faculty of Agriculture; Israel Fil: Carrari, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Carrari, Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina Fil: Giovannoni, James J. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Giovannoni, James J. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados Unidos Fil: Weigel, Detlef. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Usadel, Björn. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Usadel, Björn. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania Fil: Usadel, Björn. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania Fil: Fernie, Alisdair R. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania |
| description |
Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm. |
| publishDate |
2014 |
| dc.date.none.fl_str_mv |
2014-09 2022-07-12T17:26:07Z 2022-07-12T17:26:07Z |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.none.fl_str_mv |
http://hdl.handle.net/20.500.12123/12311 https://www.nature.com/articles/ng.3046 1546-1718 https://doi.org/10.1038/ng.3046 |
| url |
http://hdl.handle.net/20.500.12123/12311 https://www.nature.com/articles/ng.3046 https://doi.org/10.1038/ng.3046 |
| identifier_str_mv |
1546-1718 |
| dc.language.none.fl_str_mv |
eng |
| language |
eng |
| dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
| eu_rights_str_mv |
openAccess |
| rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
| dc.format.none.fl_str_mv |
application/pdf |
| dc.publisher.none.fl_str_mv |
Nature Publishing Group |
| publisher.none.fl_str_mv |
Nature Publishing Group |
| dc.source.none.fl_str_mv |
Nature Genetics 46 (9) : 1034-1039 (Septiembre 2014) reponame:INTA Digital (INTA) instname:Instituto Nacional de Tecnología Agropecuaria |
| reponame_str |
INTA Digital (INTA) |
| collection |
INTA Digital (INTA) |
| instname_str |
Instituto Nacional de Tecnología Agropecuaria |
| repository.name.fl_str_mv |
INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria |
| repository.mail.fl_str_mv |
tripaldi.nicolas@inta.gob.ar |
| _version_ |
1842341398267822080 |
| score |
12.623145 |