Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry
- Autores
- Palma, Angelina S.; Liu, Yan; Zhang, Hongtao; Zhang, Yibing; McCleary, Barry V.; Yu, Guangli; Huang, Qilin; Guidolin, Leticia Soledad; Ciocchini, Andres Eduardo; Torosantucci, Antonella; Wang, Denong; Carvalho, Ana Luísa; Fontes, Carlos M. G. A.; Mulloy, Barbara; Childs, Robert A.; Feizi, Ten; Chai, Wengang
- Año de publicación
- 2015
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Glucans are polymers of D-glucose with differing linkages in linear or branched sequences. They are constituents of microbial and plant cell-walls and involved in important bio-recognition processes, including immunomodulation, anticancer activities, pathogen virulence, and plant cellwall biodegradation. Translational possibilities for these activities in medicine and biotechnology are considerable. High-throughput micro-methods are needed to screen proteins for recognition of specific glucan sequences as a lead to structure-function studies and their exploitation. We describe construction of a "glucome" microarray, the first sequence-defined glycome-scale microarray, using a "designer" approach from targeted ligand-bearing glucans in conjunction with a novel high-sensitivity mass spectrometric sequencing method, as a screening tool to assign glucan recognition motifs. The glucome microarray comprises 153 oligosaccharide probes with high purity, representing major sequences in glucans. Negative-ion electrospray tandem mass spectrometry with collision-induced dissociation was used for complete linkage analysis of gluco-oligosaccharides in linear "homo" and "hetero" and branched sequences. The system is validated using antibodies and carbohydrate-binding modules known to target α- or β-glucans in different biological contexts, extending knowledge on their specificities, and applied to reveal new information on glucan recognition by two signaling molecules of the immune system against pathogens: Dectin-1 and DC-SIGN. The sequencing of the glucan oligosaccharides by the MS method and their interrogation on the microarrays provides detailed information on linkage, sequence and chain length requirements of glucan-recognizing proteins, and are a sensitive means of revealing unsuspected sequences in the polysaccharides.
Fil: Palma, Angelina S.. Imperial College London; Reino Unido. Universidade de Lisboa; Portugal
Fil: Liu, Yan. Imperial College London; Reino Unido
Fil: Zhang, Hongtao. Imperial College London; Reino Unido. Jiangnan University; China
Fil: Zhang, Yibing. Imperial College London; Reino Unido
Fil: McCleary, Barry V.. Megazyme International Ireland; Irlanda
Fil: Yu, Guangli. Ocean University Of China; China
Fil: Huang, Qilin. Huazhong Agricultural University; China. Wuhan University; China
Fil: Guidolin, Leticia Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina
Fil: Ciocchini, Andres Eduardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina
Fil: Torosantucci, Antonella. Istituto Superiore Di Sanita; Italia
Fil: Wang, Denong. Sri International; Estados Unidos
Fil: Carvalho, Ana Luísa. Universidade de Lisboa; Portugal
Fil: Fontes, Carlos M. G. A.. Universidade de Lisboa; Portugal
Fil: Mulloy, Barbara. Imperial College London; Reino Unido
Fil: Childs, Robert A.. Imperial College London; Reino Unido
Fil: Feizi, Ten. Imperial College London; Reino Unido
Fil: Chai, Wengang. Imperial College London; Reino Unido - Materia
-
Glucan
Glucan Recognition Motifs
Oligosaccharides
Microarray
Mass Spectrometry
Glycome
Glucome - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/38692
Ver los metadatos del registro completo
id |
CONICETDig_52376f166dd0bb91b01b78ed9252832b |
---|---|
oai_identifier_str |
oai:ri.conicet.gov.ar:11336/38692 |
network_acronym_str |
CONICETDig |
repository_id_str |
3498 |
network_name_str |
CONICET Digital (CONICET) |
spelling |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometryPalma, Angelina S.Liu, YanZhang, HongtaoZhang, YibingMcCleary, Barry V.Yu, GuangliHuang, QilinGuidolin, Leticia SoledadCiocchini, Andres EduardoTorosantucci, AntonellaWang, DenongCarvalho, Ana LuísaFontes, Carlos M. G. A.Mulloy, BarbaraChilds, Robert A.Feizi, TenChai, WengangGlucanGlucan Recognition MotifsOligosaccharidesMicroarrayMass SpectrometryGlycomeGlucomehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Glucans are polymers of D-glucose with differing linkages in linear or branched sequences. They are constituents of microbial and plant cell-walls and involved in important bio-recognition processes, including immunomodulation, anticancer activities, pathogen virulence, and plant cellwall biodegradation. Translational possibilities for these activities in medicine and biotechnology are considerable. High-throughput micro-methods are needed to screen proteins for recognition of specific glucan sequences as a lead to structure-function studies and their exploitation. We describe construction of a "glucome" microarray, the first sequence-defined glycome-scale microarray, using a "designer" approach from targeted ligand-bearing glucans in conjunction with a novel high-sensitivity mass spectrometric sequencing method, as a screening tool to assign glucan recognition motifs. The glucome microarray comprises 153 oligosaccharide probes with high purity, representing major sequences in glucans. Negative-ion electrospray tandem mass spectrometry with collision-induced dissociation was used for complete linkage analysis of gluco-oligosaccharides in linear "homo" and "hetero" and branched sequences. The system is validated using antibodies and carbohydrate-binding modules known to target α- or β-glucans in different biological contexts, extending knowledge on their specificities, and applied to reveal new information on glucan recognition by two signaling molecules of the immune system against pathogens: Dectin-1 and DC-SIGN. The sequencing of the glucan oligosaccharides by the MS method and their interrogation on the microarrays provides detailed information on linkage, sequence and chain length requirements of glucan-recognizing proteins, and are a sensitive means of revealing unsuspected sequences in the polysaccharides.Fil: Palma, Angelina S.. Imperial College London; Reino Unido. Universidade de Lisboa; PortugalFil: Liu, Yan. Imperial College London; Reino UnidoFil: Zhang, Hongtao. Imperial College London; Reino Unido. Jiangnan University; ChinaFil: Zhang, Yibing. Imperial College London; Reino UnidoFil: McCleary, Barry V.. Megazyme International Ireland; IrlandaFil: Yu, Guangli. Ocean University Of China; ChinaFil: Huang, Qilin. Huazhong Agricultural University; China. Wuhan University; ChinaFil: Guidolin, Leticia Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); ArgentinaFil: Ciocchini, Andres Eduardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); ArgentinaFil: Torosantucci, Antonella. Istituto Superiore Di Sanita; ItaliaFil: Wang, Denong. Sri International; Estados UnidosFil: Carvalho, Ana Luísa. Universidade de Lisboa; PortugalFil: Fontes, Carlos M. G. A.. Universidade de Lisboa; PortugalFil: Mulloy, Barbara. Imperial College London; Reino UnidoFil: Childs, Robert A.. Imperial College London; Reino UnidoFil: Feizi, Ten. Imperial College London; Reino UnidoFil: Chai, Wengang. Imperial College London; Reino UnidoAmerican Society for Biochemistry and Molecular Biology2015-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/38692Palma, Angelina S.; Liu, Yan; Zhang, Hongtao; Zhang, Yibing; McCleary, Barry V.; et al.; Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry; American Society for Biochemistry and Molecular Biology; Molecular & Cellular Proteomics; 14; 4; 4-2015; 974-9881535-9476CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1074/mcp.M115.048272info:eu-repo/semantics/altIdentifier/url/http://www.mcponline.org/content/14/4/974.longinfo:eu-repo/semantics/altIdentifier/url/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390274/info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:46:48Zoai:ri.conicet.gov.ar:11336/38692instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:46:49.03CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry |
title |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry |
spellingShingle |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry Palma, Angelina S. Glucan Glucan Recognition Motifs Oligosaccharides Microarray Mass Spectrometry Glycome Glucome |
title_short |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry |
title_full |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry |
title_fullStr |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry |
title_full_unstemmed |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry |
title_sort |
Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry |
dc.creator.none.fl_str_mv |
Palma, Angelina S. Liu, Yan Zhang, Hongtao Zhang, Yibing McCleary, Barry V. Yu, Guangli Huang, Qilin Guidolin, Leticia Soledad Ciocchini, Andres Eduardo Torosantucci, Antonella Wang, Denong Carvalho, Ana Luísa Fontes, Carlos M. G. A. Mulloy, Barbara Childs, Robert A. Feizi, Ten Chai, Wengang |
author |
Palma, Angelina S. |
author_facet |
Palma, Angelina S. Liu, Yan Zhang, Hongtao Zhang, Yibing McCleary, Barry V. Yu, Guangli Huang, Qilin Guidolin, Leticia Soledad Ciocchini, Andres Eduardo Torosantucci, Antonella Wang, Denong Carvalho, Ana Luísa Fontes, Carlos M. G. A. Mulloy, Barbara Childs, Robert A. Feizi, Ten Chai, Wengang |
author_role |
author |
author2 |
Liu, Yan Zhang, Hongtao Zhang, Yibing McCleary, Barry V. Yu, Guangli Huang, Qilin Guidolin, Leticia Soledad Ciocchini, Andres Eduardo Torosantucci, Antonella Wang, Denong Carvalho, Ana Luísa Fontes, Carlos M. G. A. Mulloy, Barbara Childs, Robert A. Feizi, Ten Chai, Wengang |
author2_role |
author author author author author author author author author author author author author author author author |
dc.subject.none.fl_str_mv |
Glucan Glucan Recognition Motifs Oligosaccharides Microarray Mass Spectrometry Glycome Glucome |
topic |
Glucan Glucan Recognition Motifs Oligosaccharides Microarray Mass Spectrometry Glycome Glucome |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Glucans are polymers of D-glucose with differing linkages in linear or branched sequences. They are constituents of microbial and plant cell-walls and involved in important bio-recognition processes, including immunomodulation, anticancer activities, pathogen virulence, and plant cellwall biodegradation. Translational possibilities for these activities in medicine and biotechnology are considerable. High-throughput micro-methods are needed to screen proteins for recognition of specific glucan sequences as a lead to structure-function studies and their exploitation. We describe construction of a "glucome" microarray, the first sequence-defined glycome-scale microarray, using a "designer" approach from targeted ligand-bearing glucans in conjunction with a novel high-sensitivity mass spectrometric sequencing method, as a screening tool to assign glucan recognition motifs. The glucome microarray comprises 153 oligosaccharide probes with high purity, representing major sequences in glucans. Negative-ion electrospray tandem mass spectrometry with collision-induced dissociation was used for complete linkage analysis of gluco-oligosaccharides in linear "homo" and "hetero" and branched sequences. The system is validated using antibodies and carbohydrate-binding modules known to target α- or β-glucans in different biological contexts, extending knowledge on their specificities, and applied to reveal new information on glucan recognition by two signaling molecules of the immune system against pathogens: Dectin-1 and DC-SIGN. The sequencing of the glucan oligosaccharides by the MS method and their interrogation on the microarrays provides detailed information on linkage, sequence and chain length requirements of glucan-recognizing proteins, and are a sensitive means of revealing unsuspected sequences in the polysaccharides. Fil: Palma, Angelina S.. Imperial College London; Reino Unido. Universidade de Lisboa; Portugal Fil: Liu, Yan. Imperial College London; Reino Unido Fil: Zhang, Hongtao. Imperial College London; Reino Unido. Jiangnan University; China Fil: Zhang, Yibing. Imperial College London; Reino Unido Fil: McCleary, Barry V.. Megazyme International Ireland; Irlanda Fil: Yu, Guangli. Ocean University Of China; China Fil: Huang, Qilin. Huazhong Agricultural University; China. Wuhan University; China Fil: Guidolin, Leticia Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina Fil: Ciocchini, Andres Eduardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina Fil: Torosantucci, Antonella. Istituto Superiore Di Sanita; Italia Fil: Wang, Denong. Sri International; Estados Unidos Fil: Carvalho, Ana Luísa. Universidade de Lisboa; Portugal Fil: Fontes, Carlos M. G. A.. Universidade de Lisboa; Portugal Fil: Mulloy, Barbara. Imperial College London; Reino Unido Fil: Childs, Robert A.. Imperial College London; Reino Unido Fil: Feizi, Ten. Imperial College London; Reino Unido Fil: Chai, Wengang. Imperial College London; Reino Unido |
description |
Glucans are polymers of D-glucose with differing linkages in linear or branched sequences. They are constituents of microbial and plant cell-walls and involved in important bio-recognition processes, including immunomodulation, anticancer activities, pathogen virulence, and plant cellwall biodegradation. Translational possibilities for these activities in medicine and biotechnology are considerable. High-throughput micro-methods are needed to screen proteins for recognition of specific glucan sequences as a lead to structure-function studies and their exploitation. We describe construction of a "glucome" microarray, the first sequence-defined glycome-scale microarray, using a "designer" approach from targeted ligand-bearing glucans in conjunction with a novel high-sensitivity mass spectrometric sequencing method, as a screening tool to assign glucan recognition motifs. The glucome microarray comprises 153 oligosaccharide probes with high purity, representing major sequences in glucans. Negative-ion electrospray tandem mass spectrometry with collision-induced dissociation was used for complete linkage analysis of gluco-oligosaccharides in linear "homo" and "hetero" and branched sequences. The system is validated using antibodies and carbohydrate-binding modules known to target α- or β-glucans in different biological contexts, extending knowledge on their specificities, and applied to reveal new information on glucan recognition by two signaling molecules of the immune system against pathogens: Dectin-1 and DC-SIGN. The sequencing of the glucan oligosaccharides by the MS method and their interrogation on the microarrays provides detailed information on linkage, sequence and chain length requirements of glucan-recognizing proteins, and are a sensitive means of revealing unsuspected sequences in the polysaccharides. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-04 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/38692 Palma, Angelina S.; Liu, Yan; Zhang, Hongtao; Zhang, Yibing; McCleary, Barry V.; et al.; Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry; American Society for Biochemistry and Molecular Biology; Molecular & Cellular Proteomics; 14; 4; 4-2015; 974-988 1535-9476 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/38692 |
identifier_str_mv |
Palma, Angelina S.; Liu, Yan; Zhang, Hongtao; Zhang, Yibing; McCleary, Barry V.; et al.; Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry; American Society for Biochemistry and Molecular Biology; Molecular & Cellular Proteomics; 14; 4; 4-2015; 974-988 1535-9476 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/doi/10.1074/mcp.M115.048272 info:eu-repo/semantics/altIdentifier/url/http://www.mcponline.org/content/14/4/974.long info:eu-repo/semantics/altIdentifier/url/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390274/ |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-nd/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
American Society for Biochemistry and Molecular Biology |
publisher.none.fl_str_mv |
American Society for Biochemistry and Molecular Biology |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
_version_ |
1844613461009498112 |
score |
13.070432 |