Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus

Autores
Blanco Fernandez, Maria Dolores; Klumpp, Jochen; Barrios, Melina E.; Mbayed, Viviana Andrea
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Listeria monocytogenes is an important food-borne pathogen and its bacteriophages are promising tools for its control in food and surfaces. Listeria bacteriophages belonging to the genus Pecentumvirus of the family Herelleviridae are strictly lytic, have a contractile tail and a large double stranded DNA genome (mean of 135.4 kb). We report the isolation and genome sequences of two new Pecentumvirus bacteriophages: vB_Lino_VEfB7 and vB_Liva_VAfA18. Twenty-one bacteriophages of this genus have been described and their genomes were used for the study of Pecentumvirus evolution. Analyses showed collinear genomes and gene gain and loss propensity and recombination events were distinctly found in two regions. A large potential recombination event (≈20 kB) was detected in P100 and vB_Liva_VAfA18. Phylogenetic analyses of multi-gene alignments showed that diversification events formed two groups of species distantly related.
Fil: Blanco Fernandez, Maria Dolores. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina
Fil: Klumpp, Jochen. Swiss Federal Institute of Technology Zurich; Suiza
Fil: Barrios, Melina E.. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina
Fil: Mbayed, Viviana Andrea. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay; Argentina
Materia
BACTERIOPHAGE EVOLUTION
COMPARATIVE GENOMICS
LISTERIA
PECENTUMVIRUS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/128890
Acceder
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network_name_str CONICET Digital (CONICET)
spelling Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus PecentumvirusBlanco Fernandez, Maria DoloresKlumpp, JochenBarrios, Melina E.Mbayed, Viviana AndreaBACTERIOPHAGE EVOLUTIONCOMPARATIVE GENOMICSLISTERIAPECENTUMVIRUShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Listeria monocytogenes is an important food-borne pathogen and its bacteriophages are promising tools for its control in food and surfaces. Listeria bacteriophages belonging to the genus Pecentumvirus of the family Herelleviridae are strictly lytic, have a contractile tail and a large double stranded DNA genome (mean of 135.4 kb). We report the isolation and genome sequences of two new Pecentumvirus bacteriophages: vB_Lino_VEfB7 and vB_Liva_VAfA18. Twenty-one bacteriophages of this genus have been described and their genomes were used for the study of Pecentumvirus evolution. Analyses showed collinear genomes and gene gain and loss propensity and recombination events were distinctly found in two regions. A large potential recombination event (≈20 kB) was detected in P100 and vB_Liva_VAfA18. Phylogenetic analyses of multi-gene alignments showed that diversification events formed two groups of species distantly related.Fil: Blanco Fernandez, Maria Dolores. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; ArgentinaFil: Klumpp, Jochen. Swiss Federal Institute of Technology Zurich; SuizaFil: Barrios, Melina E.. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; ArgentinaFil: Mbayed, Viviana Andrea. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay; ArgentinaAcademic Press Inc Elsevier Science2020-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/128890Blanco Fernandez, Maria Dolores; Klumpp, Jochen; Barrios, Melina E.; Mbayed, Viviana Andrea; Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus; Academic Press Inc Elsevier Science; Genomics; 113; 1; 12-2020; 411-4190888-7543CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://linkinghub.elsevier.com/retrieve/pii/S0888754320320474info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ygeno.2020.12.003info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:48:57Zoai:ri.conicet.gov.ar:11336/128890instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:48:57.752CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
title Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
spellingShingle Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
Blanco Fernandez, Maria Dolores
BACTERIOPHAGE EVOLUTION
COMPARATIVE GENOMICS
LISTERIA
PECENTUMVIRUS
title_short Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
title_full Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
title_fullStr Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
title_full_unstemmed Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
title_sort Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus
dc.creator.none.fl_str_mv Blanco Fernandez, Maria Dolores
Klumpp, Jochen
Barrios, Melina E.
Mbayed, Viviana Andrea
author Blanco Fernandez, Maria Dolores
author_facet Blanco Fernandez, Maria Dolores
Klumpp, Jochen
Barrios, Melina E.
Mbayed, Viviana Andrea
author_role author
author2 Klumpp, Jochen
Barrios, Melina E.
Mbayed, Viviana Andrea
author2_role author
author
author
dc.subject.none.fl_str_mv BACTERIOPHAGE EVOLUTION
COMPARATIVE GENOMICS
LISTERIA
PECENTUMVIRUS
topic BACTERIOPHAGE EVOLUTION
COMPARATIVE GENOMICS
LISTERIA
PECENTUMVIRUS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Listeria monocytogenes is an important food-borne pathogen and its bacteriophages are promising tools for its control in food and surfaces. Listeria bacteriophages belonging to the genus Pecentumvirus of the family Herelleviridae are strictly lytic, have a contractile tail and a large double stranded DNA genome (mean of 135.4 kb). We report the isolation and genome sequences of two new Pecentumvirus bacteriophages: vB_Lino_VEfB7 and vB_Liva_VAfA18. Twenty-one bacteriophages of this genus have been described and their genomes were used for the study of Pecentumvirus evolution. Analyses showed collinear genomes and gene gain and loss propensity and recombination events were distinctly found in two regions. A large potential recombination event (≈20 kB) was detected in P100 and vB_Liva_VAfA18. Phylogenetic analyses of multi-gene alignments showed that diversification events formed two groups of species distantly related.
Fil: Blanco Fernandez, Maria Dolores. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina
Fil: Klumpp, Jochen. Swiss Federal Institute of Technology Zurich; Suiza
Fil: Barrios, Melina E.. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina
Fil: Mbayed, Viviana Andrea. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay; Argentina
description Listeria monocytogenes is an important food-borne pathogen and its bacteriophages are promising tools for its control in food and surfaces. Listeria bacteriophages belonging to the genus Pecentumvirus of the family Herelleviridae are strictly lytic, have a contractile tail and a large double stranded DNA genome (mean of 135.4 kb). We report the isolation and genome sequences of two new Pecentumvirus bacteriophages: vB_Lino_VEfB7 and vB_Liva_VAfA18. Twenty-one bacteriophages of this genus have been described and their genomes were used for the study of Pecentumvirus evolution. Analyses showed collinear genomes and gene gain and loss propensity and recombination events were distinctly found in two regions. A large potential recombination event (≈20 kB) was detected in P100 and vB_Liva_VAfA18. Phylogenetic analyses of multi-gene alignments showed that diversification events formed two groups of species distantly related.
publishDate 2020
dc.date.none.fl_str_mv 2020-12
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/128890
Blanco Fernandez, Maria Dolores; Klumpp, Jochen; Barrios, Melina E.; Mbayed, Viviana Andrea; Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus; Academic Press Inc Elsevier Science; Genomics; 113; 1; 12-2020; 411-419
0888-7543
CONICET Digital
CONICET
url http://hdl.handle.net/11336/128890
identifier_str_mv Blanco Fernandez, Maria Dolores; Klumpp, Jochen; Barrios, Melina E.; Mbayed, Viviana Andrea; Gene gain and loss and recombination shape evolution of Listeria bacteriophages of the genus Pecentumvirus; Academic Press Inc Elsevier Science; Genomics; 113; 1; 12-2020; 411-419
0888-7543
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://linkinghub.elsevier.com/retrieve/pii/S0888754320320474
info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ygeno.2020.12.003
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Academic Press Inc Elsevier Science
publisher.none.fl_str_mv Academic Press Inc Elsevier Science
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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