Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)

Autores
Pokorny, Lisa; Pellicer, Jaume; Woudstra, Yannick; Christenhusz, Maarten J. M.; Garnatje, Teresa; Palazzesi, Luis; Johnson, Matthew G.; Maurin, Olivier; Françoso, Elaine; Roy, Shyamali; Leitch, Ilia J.; Forest, Félix; Baker, William J.; Hidalgo, Oriane
Año de publicación
2024
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Reconstructing evolutionary trajectories and transitions that have shaped floral diversity relies heavily on the phylogenetic framework on which traits are modelled. In this study, we focus on the angiosperm order Ranunculales, sister to all other eudicots, to unravel higher-level relationships, especially those tied to evolutionary transitions in flower symmetry within the family Papaveraceae. This family presents an astonishing array of floral diversity, with actinomorphic, disymmetric (two perpendicular symmetry axes), and zygomorphic flowers. We generated nuclear and plastid datasets using the Angiosperms353 universal probe set for target capture sequencing (of 353 single-copy nuclear ortholog genes), together with publicly available transcriptome and plastome data mined from open-access online repositories. We relied on the fossil record of the order Ranunculales to date our phylogenies and to establish a timeline of events. Our phylogenomic workflow shows that nuclear-plastid incongruence accompanies topological uncertainties in Ranunculales. A cocktail of incomplete lineage sorting, post-hybridization introgression, and extinction following rapid speciation most likely explain the observed knots in the topology. These knots coincide with major floral symmetry transitions and thus obscure the order of evolutionary events.
Fil: Pokorny, Lisa. Consejo Superior de Investigaciones Científicas; España
Fil: Pellicer, Jaume. Consejo Superior de Investigaciones Científicas; España
Fil: Woudstra, Yannick. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Christenhusz, Maarten J. M.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Garnatje, Teresa. Consejo Superior de Investigaciones Científicas; España
Fil: Palazzesi, Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Johnson, Matthew G.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Maurin, Olivier. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Françoso, Elaine. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Roy, Shyamali. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Leitch, Ilia J.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Forest, Félix. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Baker, William J.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Hidalgo, Oriane. Consejo Superior de Investigaciones Científicas; España
Materia
ANGIOSPERMS
PAPAVERACEAE
PHYLOGENOMICS
EVOLUTION
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/279088
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/279088
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)Pokorny, LisaPellicer, JaumeWoudstra, YannickChristenhusz, Maarten J. M.Garnatje, TeresaPalazzesi, LuisJohnson, Matthew G.Maurin, OlivierFrançoso, ElaineRoy, ShyamaliLeitch, Ilia J.Forest, FélixBaker, William J.Hidalgo, OrianeANGIOSPERMSPAPAVERACEAEPHYLOGENOMICSEVOLUTIONhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Reconstructing evolutionary trajectories and transitions that have shaped floral diversity relies heavily on the phylogenetic framework on which traits are modelled. In this study, we focus on the angiosperm order Ranunculales, sister to all other eudicots, to unravel higher-level relationships, especially those tied to evolutionary transitions in flower symmetry within the family Papaveraceae. This family presents an astonishing array of floral diversity, with actinomorphic, disymmetric (two perpendicular symmetry axes), and zygomorphic flowers. We generated nuclear and plastid datasets using the Angiosperms353 universal probe set for target capture sequencing (of 353 single-copy nuclear ortholog genes), together with publicly available transcriptome and plastome data mined from open-access online repositories. We relied on the fossil record of the order Ranunculales to date our phylogenies and to establish a timeline of events. Our phylogenomic workflow shows that nuclear-plastid incongruence accompanies topological uncertainties in Ranunculales. A cocktail of incomplete lineage sorting, post-hybridization introgression, and extinction following rapid speciation most likely explain the observed knots in the topology. These knots coincide with major floral symmetry transitions and thus obscure the order of evolutionary events.Fil: Pokorny, Lisa. Consejo Superior de Investigaciones Científicas; EspañaFil: Pellicer, Jaume. Consejo Superior de Investigaciones Científicas; EspañaFil: Woudstra, Yannick. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Christenhusz, Maarten J. M.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Garnatje, Teresa. Consejo Superior de Investigaciones Científicas; EspañaFil: Palazzesi, Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: Johnson, Matthew G.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Maurin, Olivier. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Françoso, Elaine. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Roy, Shyamali. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Leitch, Ilia J.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Forest, Félix. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Baker, William J.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino UnidoFil: Hidalgo, Oriane. Consejo Superior de Investigaciones Científicas; EspañaFrontiers Media2024-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/279088Pokorny, Lisa; Pellicer, Jaume; Woudstra, Yannick; Christenhusz, Maarten J. M.; Garnatje, Teresa; et al.; Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales); Frontiers Media; Frontiers in Plant Science; 15; 6-2024; 1-161664-462XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fpls.2024.1340056/fullinfo:eu-repo/semantics/altIdentifier/doi/10.3389/fpls.2024.1340056info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2026-01-14T12:12:54Zoai:ri.conicet.gov.ar:11336/279088instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982026-01-14 12:12:54.942CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
title Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
spellingShingle Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
Pokorny, Lisa
ANGIOSPERMS
PAPAVERACEAE
PHYLOGENOMICS
EVOLUTION
title_short Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
title_full Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
title_fullStr Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
title_full_unstemmed Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
title_sort Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
dc.creator.none.fl_str_mv Pokorny, Lisa
Pellicer, Jaume
Woudstra, Yannick
Christenhusz, Maarten J. M.
Garnatje, Teresa
Palazzesi, Luis
Johnson, Matthew G.
Maurin, Olivier
Françoso, Elaine
Roy, Shyamali
Leitch, Ilia J.
Forest, Félix
Baker, William J.
Hidalgo, Oriane
author Pokorny, Lisa
author_facet Pokorny, Lisa
Pellicer, Jaume
Woudstra, Yannick
Christenhusz, Maarten J. M.
Garnatje, Teresa
Palazzesi, Luis
Johnson, Matthew G.
Maurin, Olivier
Françoso, Elaine
Roy, Shyamali
Leitch, Ilia J.
Forest, Félix
Baker, William J.
Hidalgo, Oriane
author_role author
author2 Pellicer, Jaume
Woudstra, Yannick
Christenhusz, Maarten J. M.
Garnatje, Teresa
Palazzesi, Luis
Johnson, Matthew G.
Maurin, Olivier
Françoso, Elaine
Roy, Shyamali
Leitch, Ilia J.
Forest, Félix
Baker, William J.
Hidalgo, Oriane
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv ANGIOSPERMS
PAPAVERACEAE
PHYLOGENOMICS
EVOLUTION
topic ANGIOSPERMS
PAPAVERACEAE
PHYLOGENOMICS
EVOLUTION
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Reconstructing evolutionary trajectories and transitions that have shaped floral diversity relies heavily on the phylogenetic framework on which traits are modelled. In this study, we focus on the angiosperm order Ranunculales, sister to all other eudicots, to unravel higher-level relationships, especially those tied to evolutionary transitions in flower symmetry within the family Papaveraceae. This family presents an astonishing array of floral diversity, with actinomorphic, disymmetric (two perpendicular symmetry axes), and zygomorphic flowers. We generated nuclear and plastid datasets using the Angiosperms353 universal probe set for target capture sequencing (of 353 single-copy nuclear ortholog genes), together with publicly available transcriptome and plastome data mined from open-access online repositories. We relied on the fossil record of the order Ranunculales to date our phylogenies and to establish a timeline of events. Our phylogenomic workflow shows that nuclear-plastid incongruence accompanies topological uncertainties in Ranunculales. A cocktail of incomplete lineage sorting, post-hybridization introgression, and extinction following rapid speciation most likely explain the observed knots in the topology. These knots coincide with major floral symmetry transitions and thus obscure the order of evolutionary events.
Fil: Pokorny, Lisa. Consejo Superior de Investigaciones Científicas; España
Fil: Pellicer, Jaume. Consejo Superior de Investigaciones Científicas; España
Fil: Woudstra, Yannick. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Christenhusz, Maarten J. M.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Garnatje, Teresa. Consejo Superior de Investigaciones Científicas; España
Fil: Palazzesi, Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Johnson, Matthew G.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Maurin, Olivier. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Françoso, Elaine. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Roy, Shyamali. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Leitch, Ilia J.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Forest, Félix. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Baker, William J.. Royal Botanic Gardens, Kew. Jodrell Laboratory. Departamento Botanic. Molecular Systematics; Reino Unido
Fil: Hidalgo, Oriane. Consejo Superior de Investigaciones Científicas; España
description Reconstructing evolutionary trajectories and transitions that have shaped floral diversity relies heavily on the phylogenetic framework on which traits are modelled. In this study, we focus on the angiosperm order Ranunculales, sister to all other eudicots, to unravel higher-level relationships, especially those tied to evolutionary transitions in flower symmetry within the family Papaveraceae. This family presents an astonishing array of floral diversity, with actinomorphic, disymmetric (two perpendicular symmetry axes), and zygomorphic flowers. We generated nuclear and plastid datasets using the Angiosperms353 universal probe set for target capture sequencing (of 353 single-copy nuclear ortholog genes), together with publicly available transcriptome and plastome data mined from open-access online repositories. We relied on the fossil record of the order Ranunculales to date our phylogenies and to establish a timeline of events. Our phylogenomic workflow shows that nuclear-plastid incongruence accompanies topological uncertainties in Ranunculales. A cocktail of incomplete lineage sorting, post-hybridization introgression, and extinction following rapid speciation most likely explain the observed knots in the topology. These knots coincide with major floral symmetry transitions and thus obscure the order of evolutionary events.
publishDate 2024
dc.date.none.fl_str_mv 2024-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/279088
Pokorny, Lisa; Pellicer, Jaume; Woudstra, Yannick; Christenhusz, Maarten J. M.; Garnatje, Teresa; et al.; Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales); Frontiers Media; Frontiers in Plant Science; 15; 6-2024; 1-16
1664-462X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/279088
identifier_str_mv Pokorny, Lisa; Pellicer, Jaume; Woudstra, Yannick; Christenhusz, Maarten J. M.; Garnatje, Teresa; et al.; Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales); Frontiers Media; Frontiers in Plant Science; 15; 6-2024; 1-16
1664-462X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fpls.2024.1340056/full
info:eu-repo/semantics/altIdentifier/doi/10.3389/fpls.2024.1340056
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Frontiers Media
publisher.none.fl_str_mv Frontiers Media
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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