Parallel and convergent genomic changes underlie independent subterranean colonization across beetles

Autores
Balart García, Pau; Arístide, Leandro; Bradford, Tessa M.; Beasley Hall, Perry G.; Polak, Slavko; Cooper, Steven J. B.; Fernández, Rosa
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Adaptation to life in caves is often accompanied by dramatically convergent changes across distantly related taxa, epitomized by the loss or reduction of eyes and pigmentation. Nevertheless, the genomic underpinnings underlying cave-related phenotypes are largely unexplored from a macroevolutionary perspective. Here we investigate genome-wide gene evolutionary dynamics in three distantly related beetle tribes with at least six instances of independent colonization of subterranean habitats, inhabiting both aquatic and terrestrial underground systems. Our results indicate that remarkable gene repertoire changes mainly driven by gene family expansions occurred prior to underground colonization in the three tribes, suggesting that genomic exaptation may have facilitated a strict subterranean lifestyle parallelly across beetle lineages. The three tribes experienced both parallel and convergent changes in the evolutionary dynamics of their gene repertoires. These findings pave the way towards a deeper understanding of the evolution of the genomic toolkit in hypogean fauna.
Fil: Balart García, Pau. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; España
Fil: Arístide, Leandro. Universidad Nacional Arturo Jauretche. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos. Provincia de Buenos Aires. Ministerio de Salud. Hospital Alta Complejidad en Red El Cruce Dr. Néstor Carlos Kirchner Samic. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos; Argentina. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; España
Fil: Bradford, Tessa M.. University of Adelaide; Australia. South Australian Museum; Australia
Fil: Beasley Hall, Perry G.. University of Adelaide; Australia. South Australian Museum; Australia
Fil: Polak, Slavko. Notranjska Museum Postojna; Polonia
Fil: Cooper, Steven J. B.. South Australian Museum; Australia. University of Adelaide; Australia
Fil: Fernández, Rosa. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; España
Materia
MACROEVOLUTION
PHYLOGENOMICS
CAVE BEETLES
CONVERGENCE
COMPARATIVE GENOMICS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/226990
Acceder
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repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Parallel and convergent genomic changes underlie independent subterranean colonization across beetlesBalart García, PauArístide, LeandroBradford, Tessa M.Beasley Hall, Perry G.Polak, SlavkoCooper, Steven J. B.Fernández, RosaMACROEVOLUTIONPHYLOGENOMICSCAVE BEETLESCONVERGENCECOMPARATIVE GENOMICShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Adaptation to life in caves is often accompanied by dramatically convergent changes across distantly related taxa, epitomized by the loss or reduction of eyes and pigmentation. Nevertheless, the genomic underpinnings underlying cave-related phenotypes are largely unexplored from a macroevolutionary perspective. Here we investigate genome-wide gene evolutionary dynamics in three distantly related beetle tribes with at least six instances of independent colonization of subterranean habitats, inhabiting both aquatic and terrestrial underground systems. Our results indicate that remarkable gene repertoire changes mainly driven by gene family expansions occurred prior to underground colonization in the three tribes, suggesting that genomic exaptation may have facilitated a strict subterranean lifestyle parallelly across beetle lineages. The three tribes experienced both parallel and convergent changes in the evolutionary dynamics of their gene repertoires. These findings pave the way towards a deeper understanding of the evolution of the genomic toolkit in hypogean fauna.Fil: Balart García, Pau. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; EspañaFil: Arístide, Leandro. Universidad Nacional Arturo Jauretche. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos. Provincia de Buenos Aires. Ministerio de Salud. Hospital Alta Complejidad en Red El Cruce Dr. Néstor Carlos Kirchner Samic. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos; Argentina. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; EspañaFil: Bradford, Tessa M.. University of Adelaide; Australia. South Australian Museum; AustraliaFil: Beasley Hall, Perry G.. University of Adelaide; Australia. South Australian Museum; AustraliaFil: Polak, Slavko. Notranjska Museum Postojna; PoloniaFil: Cooper, Steven J. B.. South Australian Museum; Australia. University of Adelaide; AustraliaFil: Fernández, Rosa. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; EspañaNature Research2023-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/226990Balart García, Pau; Arístide, Leandro; Bradford, Tessa M.; Beasley Hall, Perry G.; Polak, Slavko; et al.; Parallel and convergent genomic changes underlie independent subterranean colonization across beetles; Nature Research; Nature Communications; 14; 1; 12-2023; 1-132041-1723CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41467-023-39603-1info:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-023-39603-1info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:19:36Zoai:ri.conicet.gov.ar:11336/226990instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:19:36.623CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
title Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
spellingShingle Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
Balart García, Pau
MACROEVOLUTION
PHYLOGENOMICS
CAVE BEETLES
CONVERGENCE
COMPARATIVE GENOMICS
title_short Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
title_full Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
title_fullStr Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
title_full_unstemmed Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
title_sort Parallel and convergent genomic changes underlie independent subterranean colonization across beetles
dc.creator.none.fl_str_mv Balart García, Pau
Arístide, Leandro
Bradford, Tessa M.
Beasley Hall, Perry G.
Polak, Slavko
Cooper, Steven J. B.
Fernández, Rosa
author Balart García, Pau
author_facet Balart García, Pau
Arístide, Leandro
Bradford, Tessa M.
Beasley Hall, Perry G.
Polak, Slavko
Cooper, Steven J. B.
Fernández, Rosa
author_role author
author2 Arístide, Leandro
Bradford, Tessa M.
Beasley Hall, Perry G.
Polak, Slavko
Cooper, Steven J. B.
Fernández, Rosa
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv MACROEVOLUTION
PHYLOGENOMICS
CAVE BEETLES
CONVERGENCE
COMPARATIVE GENOMICS
topic MACROEVOLUTION
PHYLOGENOMICS
CAVE BEETLES
CONVERGENCE
COMPARATIVE GENOMICS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Adaptation to life in caves is often accompanied by dramatically convergent changes across distantly related taxa, epitomized by the loss or reduction of eyes and pigmentation. Nevertheless, the genomic underpinnings underlying cave-related phenotypes are largely unexplored from a macroevolutionary perspective. Here we investigate genome-wide gene evolutionary dynamics in three distantly related beetle tribes with at least six instances of independent colonization of subterranean habitats, inhabiting both aquatic and terrestrial underground systems. Our results indicate that remarkable gene repertoire changes mainly driven by gene family expansions occurred prior to underground colonization in the three tribes, suggesting that genomic exaptation may have facilitated a strict subterranean lifestyle parallelly across beetle lineages. The three tribes experienced both parallel and convergent changes in the evolutionary dynamics of their gene repertoires. These findings pave the way towards a deeper understanding of the evolution of the genomic toolkit in hypogean fauna.
Fil: Balart García, Pau. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; España
Fil: Arístide, Leandro. Universidad Nacional Arturo Jauretche. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos. Provincia de Buenos Aires. Ministerio de Salud. Hospital Alta Complejidad en Red El Cruce Dr. Néstor Carlos Kirchner Samic. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Unidad Ejecutora de Estudios en Neurociencias y Sistemas Complejos; Argentina. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; España
Fil: Bradford, Tessa M.. University of Adelaide; Australia. South Australian Museum; Australia
Fil: Beasley Hall, Perry G.. University of Adelaide; Australia. South Australian Museum; Australia
Fil: Polak, Slavko. Notranjska Museum Postojna; Polonia
Fil: Cooper, Steven J. B.. South Australian Museum; Australia. University of Adelaide; Australia
Fil: Fernández, Rosa. Consejo Superior de Investigaciones Científicas. Instituto de Biología Evolutiva; España
description Adaptation to life in caves is often accompanied by dramatically convergent changes across distantly related taxa, epitomized by the loss or reduction of eyes and pigmentation. Nevertheless, the genomic underpinnings underlying cave-related phenotypes are largely unexplored from a macroevolutionary perspective. Here we investigate genome-wide gene evolutionary dynamics in three distantly related beetle tribes with at least six instances of independent colonization of subterranean habitats, inhabiting both aquatic and terrestrial underground systems. Our results indicate that remarkable gene repertoire changes mainly driven by gene family expansions occurred prior to underground colonization in the three tribes, suggesting that genomic exaptation may have facilitated a strict subterranean lifestyle parallelly across beetle lineages. The three tribes experienced both parallel and convergent changes in the evolutionary dynamics of their gene repertoires. These findings pave the way towards a deeper understanding of the evolution of the genomic toolkit in hypogean fauna.
publishDate 2023
dc.date.none.fl_str_mv 2023-12
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/226990
Balart García, Pau; Arístide, Leandro; Bradford, Tessa M.; Beasley Hall, Perry G.; Polak, Slavko; et al.; Parallel and convergent genomic changes underlie independent subterranean colonization across beetles; Nature Research; Nature Communications; 14; 1; 12-2023; 1-13
2041-1723
CONICET Digital
CONICET
url http://hdl.handle.net/11336/226990
identifier_str_mv Balart García, Pau; Arístide, Leandro; Bradford, Tessa M.; Beasley Hall, Perry G.; Polak, Slavko; et al.; Parallel and convergent genomic changes underlie independent subterranean colonization across beetles; Nature Research; Nature Communications; 14; 1; 12-2023; 1-13
2041-1723
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41467-023-39603-1
info:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-023-39603-1
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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