Topology and dynamics of the zebrafish segmentation clock core circuit
- Autores
- Schroter, Christian; Ares, Saúl; Morelli, Luis Guillermo; Isakova, Alina; Hens, Korneel; Soroldoni, Daniele; Gajewski, Martin; Jülicher, Frank; Maerkl, Sebastian J.; Deplancke, Bart; Oates, Andrew C.
- Año de publicación
- 2012
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- During vertebrate embryogenesis, the rhythmic and sequential segmentation of the body axis is regulated by an oscillating genetic network termed the segmentation clock. We describe a new dynamic model for the core pace-making circuit of the zebrafish segmentation clock based on a systematic biochemical investigation of the network's topology and precise measurements of somitogenesis dynamics in novel genetic mutants. We show that the core pace-making circuit consists of two distinct negative feedback loops, one with Her1 homodimers and the other with Her7:Hes6 heterodimers, operating in parallel. To explain the observed single and double mutant phenotypes of her1, her7, and hes6 mutant embryos in our dynamic model, we postulate that the availability and effective stability of the dimers with DNA binding activity is controlled in a "dimer cloud" that contains all possible dimeric combinations between the three factors. This feature of our model predicts that Hes6 protein levels should oscillate despite constant hes6 mRNA production, which we confirm experimentally using novel Hes6 antibodies. The control of the circuit's dynamics by a population of dimers with and without DNA binding activity is a new principle for the segmentation clock and may be relevant to other biological clocks and transcriptional regulatory networks. © 2012 Schröter et al.
Fil: Schroter, Christian. University of Cambridge; Estados Unidos
Fil: Ares, Saúl. Max Planck Institute For The Physics Of Complex Systems; Alemania
Fil: Morelli, Luis Guillermo. Universidad de Buenos Aires; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física de Buenos Aires; Argentina
Fil: Isakova, Alina. Ecole Polytechnique Federale de Lausanne; Francia
Fil: Hens, Korneel. Ecole Polytechnique Federale de Lausanne; Francia
Fil: Soroldoni, Daniele. Max Planck Institute Of Molecular Cell Biology And Genetics; Alemania
Fil: Gajewski, Martin. Universitat zu Köln; Alemania
Fil: Jülicher, Frank. Max Planck Institute For The Physics Of Complex Systems; Alemania
Fil: Maerkl, Sebastian J.. Ecole Polytechnique Federale de Lausanne; Francia
Fil: Deplancke, Bart. Ecole Polytechnique Federale de Lausanne; Francia
Fil: Oates, Andrew C.. Max Planck Institute Of Molecular Cell Biology And Genetics; Alemania - Materia
-
segmentation clock
core circuit
genetic network - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/56741
Ver los metadatos del registro completo
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Topology and dynamics of the zebrafish segmentation clock core circuitSchroter, ChristianAres, SaúlMorelli, Luis GuillermoIsakova, AlinaHens, KorneelSoroldoni, DanieleGajewski, MartinJülicher, FrankMaerkl, Sebastian J.Deplancke, BartOates, Andrew C.segmentation clockcore circuitgenetic networkhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1https://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1During vertebrate embryogenesis, the rhythmic and sequential segmentation of the body axis is regulated by an oscillating genetic network termed the segmentation clock. We describe a new dynamic model for the core pace-making circuit of the zebrafish segmentation clock based on a systematic biochemical investigation of the network's topology and precise measurements of somitogenesis dynamics in novel genetic mutants. We show that the core pace-making circuit consists of two distinct negative feedback loops, one with Her1 homodimers and the other with Her7:Hes6 heterodimers, operating in parallel. To explain the observed single and double mutant phenotypes of her1, her7, and hes6 mutant embryos in our dynamic model, we postulate that the availability and effective stability of the dimers with DNA binding activity is controlled in a "dimer cloud" that contains all possible dimeric combinations between the three factors. This feature of our model predicts that Hes6 protein levels should oscillate despite constant hes6 mRNA production, which we confirm experimentally using novel Hes6 antibodies. The control of the circuit's dynamics by a population of dimers with and without DNA binding activity is a new principle for the segmentation clock and may be relevant to other biological clocks and transcriptional regulatory networks. © 2012 Schröter et al.Fil: Schroter, Christian. University of Cambridge; Estados UnidosFil: Ares, Saúl. Max Planck Institute For The Physics Of Complex Systems; AlemaniaFil: Morelli, Luis Guillermo. Universidad de Buenos Aires; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física de Buenos Aires; ArgentinaFil: Isakova, Alina. Ecole Polytechnique Federale de Lausanne; FranciaFil: Hens, Korneel. Ecole Polytechnique Federale de Lausanne; FranciaFil: Soroldoni, Daniele. Max Planck Institute Of Molecular Cell Biology And Genetics; AlemaniaFil: Gajewski, Martin. Universitat zu Köln; AlemaniaFil: Jülicher, Frank. Max Planck Institute For The Physics Of Complex Systems; AlemaniaFil: Maerkl, Sebastian J.. Ecole Polytechnique Federale de Lausanne; FranciaFil: Deplancke, Bart. Ecole Polytechnique Federale de Lausanne; FranciaFil: Oates, Andrew C.. Max Planck Institute Of Molecular Cell Biology And Genetics; AlemaniaPublic Library of Science2012-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/56741Schroter, Christian; Ares, Saúl; Morelli, Luis Guillermo; Isakova, Alina; Hens, Korneel; et al.; Topology and dynamics of the zebrafish segmentation clock core circuit; Public Library of Science; PLoS Biology; 10; 7; 7-2012; 1001364-10013641544-9173CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001364info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pbio.1001364info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:29:42Zoai:ri.conicet.gov.ar:11336/56741instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:29:43.285CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Topology and dynamics of the zebrafish segmentation clock core circuit |
title |
Topology and dynamics of the zebrafish segmentation clock core circuit |
spellingShingle |
Topology and dynamics of the zebrafish segmentation clock core circuit Schroter, Christian segmentation clock core circuit genetic network |
title_short |
Topology and dynamics of the zebrafish segmentation clock core circuit |
title_full |
Topology and dynamics of the zebrafish segmentation clock core circuit |
title_fullStr |
Topology and dynamics of the zebrafish segmentation clock core circuit |
title_full_unstemmed |
Topology and dynamics of the zebrafish segmentation clock core circuit |
title_sort |
Topology and dynamics of the zebrafish segmentation clock core circuit |
dc.creator.none.fl_str_mv |
Schroter, Christian Ares, Saúl Morelli, Luis Guillermo Isakova, Alina Hens, Korneel Soroldoni, Daniele Gajewski, Martin Jülicher, Frank Maerkl, Sebastian J. Deplancke, Bart Oates, Andrew C. |
author |
Schroter, Christian |
author_facet |
Schroter, Christian Ares, Saúl Morelli, Luis Guillermo Isakova, Alina Hens, Korneel Soroldoni, Daniele Gajewski, Martin Jülicher, Frank Maerkl, Sebastian J. Deplancke, Bart Oates, Andrew C. |
author_role |
author |
author2 |
Ares, Saúl Morelli, Luis Guillermo Isakova, Alina Hens, Korneel Soroldoni, Daniele Gajewski, Martin Jülicher, Frank Maerkl, Sebastian J. Deplancke, Bart Oates, Andrew C. |
author2_role |
author author author author author author author author author author |
dc.subject.none.fl_str_mv |
segmentation clock core circuit genetic network |
topic |
segmentation clock core circuit genetic network |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
During vertebrate embryogenesis, the rhythmic and sequential segmentation of the body axis is regulated by an oscillating genetic network termed the segmentation clock. We describe a new dynamic model for the core pace-making circuit of the zebrafish segmentation clock based on a systematic biochemical investigation of the network's topology and precise measurements of somitogenesis dynamics in novel genetic mutants. We show that the core pace-making circuit consists of two distinct negative feedback loops, one with Her1 homodimers and the other with Her7:Hes6 heterodimers, operating in parallel. To explain the observed single and double mutant phenotypes of her1, her7, and hes6 mutant embryos in our dynamic model, we postulate that the availability and effective stability of the dimers with DNA binding activity is controlled in a "dimer cloud" that contains all possible dimeric combinations between the three factors. This feature of our model predicts that Hes6 protein levels should oscillate despite constant hes6 mRNA production, which we confirm experimentally using novel Hes6 antibodies. The control of the circuit's dynamics by a population of dimers with and without DNA binding activity is a new principle for the segmentation clock and may be relevant to other biological clocks and transcriptional regulatory networks. © 2012 Schröter et al. Fil: Schroter, Christian. University of Cambridge; Estados Unidos Fil: Ares, Saúl. Max Planck Institute For The Physics Of Complex Systems; Alemania Fil: Morelli, Luis Guillermo. Universidad de Buenos Aires; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física de Buenos Aires; Argentina Fil: Isakova, Alina. Ecole Polytechnique Federale de Lausanne; Francia Fil: Hens, Korneel. Ecole Polytechnique Federale de Lausanne; Francia Fil: Soroldoni, Daniele. Max Planck Institute Of Molecular Cell Biology And Genetics; Alemania Fil: Gajewski, Martin. Universitat zu Köln; Alemania Fil: Jülicher, Frank. Max Planck Institute For The Physics Of Complex Systems; Alemania Fil: Maerkl, Sebastian J.. Ecole Polytechnique Federale de Lausanne; Francia Fil: Deplancke, Bart. Ecole Polytechnique Federale de Lausanne; Francia Fil: Oates, Andrew C.. Max Planck Institute Of Molecular Cell Biology And Genetics; Alemania |
description |
During vertebrate embryogenesis, the rhythmic and sequential segmentation of the body axis is regulated by an oscillating genetic network termed the segmentation clock. We describe a new dynamic model for the core pace-making circuit of the zebrafish segmentation clock based on a systematic biochemical investigation of the network's topology and precise measurements of somitogenesis dynamics in novel genetic mutants. We show that the core pace-making circuit consists of two distinct negative feedback loops, one with Her1 homodimers and the other with Her7:Hes6 heterodimers, operating in parallel. To explain the observed single and double mutant phenotypes of her1, her7, and hes6 mutant embryos in our dynamic model, we postulate that the availability and effective stability of the dimers with DNA binding activity is controlled in a "dimer cloud" that contains all possible dimeric combinations between the three factors. This feature of our model predicts that Hes6 protein levels should oscillate despite constant hes6 mRNA production, which we confirm experimentally using novel Hes6 antibodies. The control of the circuit's dynamics by a population of dimers with and without DNA binding activity is a new principle for the segmentation clock and may be relevant to other biological clocks and transcriptional regulatory networks. © 2012 Schröter et al. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-07 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/56741 Schroter, Christian; Ares, Saúl; Morelli, Luis Guillermo; Isakova, Alina; Hens, Korneel; et al.; Topology and dynamics of the zebrafish segmentation clock core circuit; Public Library of Science; PLoS Biology; 10; 7; 7-2012; 1001364-1001364 1544-9173 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/56741 |
identifier_str_mv |
Schroter, Christian; Ares, Saúl; Morelli, Luis Guillermo; Isakova, Alina; Hens, Korneel; et al.; Topology and dynamics of the zebrafish segmentation clock core circuit; Public Library of Science; PLoS Biology; 10; 7; 7-2012; 1001364-1001364 1544-9173 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001364 info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pbio.1001364 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Public Library of Science |
publisher.none.fl_str_mv |
Public Library of Science |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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1844614304439992320 |
score |
13.070432 |