Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris

Autores
Leavitt, William D.; Waldbauer, Jacob; Venceslau, Sofia S.; Sim, Min Sub; Zhang, Lichun; Boidi, Flavia Jaquelina; Plummer, Sydney; Díaz, Julia M.; Pereira, Inês A. C.; Bradley, Alexander S.
Año de publicación
2024
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Fil: Leavitt, William D. Dartmouth College. Department of Earth Sciences, Hanover, New Hampshire; United States of America.
Fil: Leavitt, William D. Washington University in St. Louis. Department of Earth and Planetary Sciences, Missouri; United States of America.
Fil: Waldbauer, Jacob. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Venceslau, Sofia S. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Sim, Min Sub. Seoul National University. School of Earth and Environmental Sciences; South Korea.
Fil: Zhang, Lichun. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Flavia Jaquelina Boidi. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Flavia Jaquelina Boidi. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales. Centro de Investigaciones en Ciencias de la Tierra; Argentina.
Fil: Flavia Jaquelina Boidi. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina.
Fil: Plummer, Sydney. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Díaz, Julia M. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Pereira, Inês A. C. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Bradley, Alexander S. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Bradley, Alexander S. Washington University in St. Louis. Division of Biology and Biomedical Sciences, Missouri; United States of America.
Abstract: Microbial sulfate reduction is central to the global carbon cycle and the redox evolu-tion of Earth's surface. Tracking the activity of sulfate reducing microorganisms overspace and time relies on a nuanced understanding of stable sulfur isotope fractiona-tion in the context of the biochemical machinery of the metabolism. Here, we link themagnitude of stable sulfur isotopic fractionation to proteomic and metabolite profilesunder different cellular energetic regimes. When energy availability is limited, cell-specific sulfate respiration rates and net sulfur isotope fractionation inversely covary. Beyond net S isotope fractionation values, we also quantified shifts in protein expres-sion, abundances and isotopic composition of intracellular S metabolites, and lipidstructures and lipid/water H isotope fractionation values. These coupled approachesreveal which protein abundances shift directly as a function of energy flux, those thatvary minimally, and those that may vary independent of energy flux and likely do notcontribute to shifts in S-isotope fractionation. By coupling the bulk S-isotope obser-vations with quantitative proteomics, we provide novel constraints for metabolic iso-tope models. Together, these results lay the foundation for more predictive metabolicfractionation models, alongside interpretations of environmental sulfur and sulfatereducer lipid-H isotope data.
info:eu-repo/semantics/publishedVersion
Fil: Leavitt, William D. Dartmouth College. Department of Earth Sciences, Hanover, New Hampshire; United States of America.
Fil: Leavitt, William D. Washington University in St. Louis. Department of Earth and Planetary Sciences, Missouri; United States of America.
Fil: Waldbauer, Jacob. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Venceslau, Sofia S. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Sim, Min Sub. Seoul National University. School of Earth and Environmental Sciences; South Korea.
Fil: Zhang, Lichun. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Flavia Jaquelina Boidi. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Flavia Jaquelina Boidi. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales. Centro de Investigaciones en Ciencias de la Tierra; Argentina.
Fil: Flavia Jaquelina Boidi. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina.
Fil: Plummer, Sydney. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Díaz, Julia M. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Pereira, Inês A. C. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Bradley, Alexander S. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Bradley, Alexander S. Washington University in St. Louis. Division of Biology and Biomedical Sciences, Missouri; United States of America.
Materia
Chemostat
Compound-specific hydrogen isotopes
Microbial sulfate reduction
Quantitative proteomics
Stable sulfur isotopes
Nivel de accesibilidad
acceso abierto
Condiciones de uso
Repositorio
Repositorio Digital Universitario (UNC)
Institución
Universidad Nacional de Córdoba
OAI Identificador
oai:rdu.unc.edu.ar:11086/553191

id RDUUNC_e15279f8602ba787beee6a73c77d1012
oai_identifier_str oai:rdu.unc.edu.ar:11086/553191
network_acronym_str RDUUNC
repository_id_str 2572
network_name_str Repositorio Digital Universitario (UNC)
spelling Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgarisLeavitt, William D.Waldbauer, JacobVenceslau, Sofia S.Sim, Min SubZhang, LichunBoidi, Flavia JaquelinaPlummer, SydneyDíaz, Julia M.Pereira, Inês A. C.Bradley, Alexander S.ChemostatCompound-specific hydrogen isotopesMicrobial sulfate reductionQuantitative proteomicsStable sulfur isotopesFil: Leavitt, William D. Dartmouth College. Department of Earth Sciences, Hanover, New Hampshire; United States of America.Fil: Leavitt, William D. Washington University in St. Louis. Department of Earth and Planetary Sciences, Missouri; United States of America.Fil: Waldbauer, Jacob. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.Fil: Venceslau, Sofia S. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.Fil: Sim, Min Sub. Seoul National University. School of Earth and Environmental Sciences; South Korea.Fil: Zhang, Lichun. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.Fil: Flavia Jaquelina Boidi. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.Fil: Flavia Jaquelina Boidi. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales. Centro de Investigaciones en Ciencias de la Tierra; Argentina.Fil: Flavia Jaquelina Boidi. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina.Fil: Plummer, Sydney. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.Fil: Díaz, Julia M. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.Fil: Pereira, Inês A. C. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.Fil: Bradley, Alexander S. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.Fil: Bradley, Alexander S. Washington University in St. Louis. Division of Biology and Biomedical Sciences, Missouri; United States of America.Abstract: Microbial sulfate reduction is central to the global carbon cycle and the redox evolu-tion of Earth's surface. Tracking the activity of sulfate reducing microorganisms overspace and time relies on a nuanced understanding of stable sulfur isotope fractiona-tion in the context of the biochemical machinery of the metabolism. Here, we link themagnitude of stable sulfur isotopic fractionation to proteomic and metabolite profilesunder different cellular energetic regimes. When energy availability is limited, cell-specific sulfate respiration rates and net sulfur isotope fractionation inversely covary. Beyond net S isotope fractionation values, we also quantified shifts in protein expres-sion, abundances and isotopic composition of intracellular S metabolites, and lipidstructures and lipid/water H isotope fractionation values. These coupled approachesreveal which protein abundances shift directly as a function of energy flux, those thatvary minimally, and those that may vary independent of energy flux and likely do notcontribute to shifts in S-isotope fractionation. By coupling the bulk S-isotope obser-vations with quantitative proteomics, we provide novel constraints for metabolic iso-tope models. Together, these results lay the foundation for more predictive metabolicfractionation models, alongside interpretations of environmental sulfur and sulfatereducer lipid-H isotope data.info:eu-repo/semantics/publishedVersionFil: Leavitt, William D. Dartmouth College. Department of Earth Sciences, Hanover, New Hampshire; United States of America.Fil: Leavitt, William D. Washington University in St. Louis. Department of Earth and Planetary Sciences, Missouri; United States of America.Fil: Waldbauer, Jacob. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.Fil: Venceslau, Sofia S. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.Fil: Sim, Min Sub. Seoul National University. School of Earth and Environmental Sciences; South Korea.Fil: Zhang, Lichun. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.Fil: Flavia Jaquelina Boidi. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.Fil: Flavia Jaquelina Boidi. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales. Centro de Investigaciones en Ciencias de la Tierra; Argentina.Fil: Flavia Jaquelina Boidi. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina.Fil: Plummer, Sydney. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.Fil: Díaz, Julia M. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.Fil: Pereira, Inês A. C. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.Fil: Bradley, Alexander S. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.Fil: Bradley, Alexander S. Washington University in St. Louis. Division of Biology and Biomedical Sciences, Missouri; United States of America.https://orcid.org/0000-0002-7909-2475https://orcid.org/0000-0002-0338-6143https://orcid.org/0000-0001-8774-1351https://orcid.org/0000-0002-3491-9002https://orcid.org/0000-0001-7135-87452024info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfLeavitt, W. D., Waldbauer, J.,Venceslau, S. S., Sim, M. S., Zhang, L., Boidi, F. J., Plummer, S.,Diaz, J. M., Pereira, I. A. C., & Bradley, A. S. (2024). Energyflux couples sulfur isotope fractionation to proteomic andmetabolite profiles in Desulfovibrio vulgaris. Geobiology, 22,e12600. https://doi.org/10.1111/gbi.126001472-4677http://hdl.handle.net/11086/5531911472-4669https://doi.org/10.1111/gbi.12600enginfo:eu-repo/semantics/openAccessreponame:Repositorio Digital Universitario (UNC)instname:Universidad Nacional de Córdobainstacron:UNC2025-09-29T13:44:22Zoai:rdu.unc.edu.ar:11086/553191Institucionalhttps://rdu.unc.edu.ar/Universidad públicaNo correspondehttp://rdu.unc.edu.ar/oai/snrdoca.unc@gmail.comArgentinaNo correspondeNo correspondeNo correspondeopendoar:25722025-09-29 13:44:22.593Repositorio Digital Universitario (UNC) - Universidad Nacional de Córdobafalse
dc.title.none.fl_str_mv Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
title Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
spellingShingle Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
Leavitt, William D.
Chemostat
Compound-specific hydrogen isotopes
Microbial sulfate reduction
Quantitative proteomics
Stable sulfur isotopes
title_short Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
title_full Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
title_fullStr Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
title_full_unstemmed Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
title_sort Energy flux couples sulfur isotope fractionation to proteomicand metabolite profiles in Desulfovibrio vulgaris
dc.creator.none.fl_str_mv Leavitt, William D.
Waldbauer, Jacob
Venceslau, Sofia S.
Sim, Min Sub
Zhang, Lichun
Boidi, Flavia Jaquelina
Plummer, Sydney
Díaz, Julia M.
Pereira, Inês A. C.
Bradley, Alexander S.
author Leavitt, William D.
author_facet Leavitt, William D.
Waldbauer, Jacob
Venceslau, Sofia S.
Sim, Min Sub
Zhang, Lichun
Boidi, Flavia Jaquelina
Plummer, Sydney
Díaz, Julia M.
Pereira, Inês A. C.
Bradley, Alexander S.
author_role author
author2 Waldbauer, Jacob
Venceslau, Sofia S.
Sim, Min Sub
Zhang, Lichun
Boidi, Flavia Jaquelina
Plummer, Sydney
Díaz, Julia M.
Pereira, Inês A. C.
Bradley, Alexander S.
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv https://orcid.org/0000-0002-7909-2475
https://orcid.org/0000-0002-0338-6143
https://orcid.org/0000-0001-8774-1351
https://orcid.org/0000-0002-3491-9002
https://orcid.org/0000-0001-7135-8745
dc.subject.none.fl_str_mv Chemostat
Compound-specific hydrogen isotopes
Microbial sulfate reduction
Quantitative proteomics
Stable sulfur isotopes
topic Chemostat
Compound-specific hydrogen isotopes
Microbial sulfate reduction
Quantitative proteomics
Stable sulfur isotopes
dc.description.none.fl_txt_mv Fil: Leavitt, William D. Dartmouth College. Department of Earth Sciences, Hanover, New Hampshire; United States of America.
Fil: Leavitt, William D. Washington University in St. Louis. Department of Earth and Planetary Sciences, Missouri; United States of America.
Fil: Waldbauer, Jacob. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Venceslau, Sofia S. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Sim, Min Sub. Seoul National University. School of Earth and Environmental Sciences; South Korea.
Fil: Zhang, Lichun. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Flavia Jaquelina Boidi. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Flavia Jaquelina Boidi. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales. Centro de Investigaciones en Ciencias de la Tierra; Argentina.
Fil: Flavia Jaquelina Boidi. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina.
Fil: Plummer, Sydney. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Díaz, Julia M. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Pereira, Inês A. C. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Bradley, Alexander S. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Bradley, Alexander S. Washington University in St. Louis. Division of Biology and Biomedical Sciences, Missouri; United States of America.
Abstract: Microbial sulfate reduction is central to the global carbon cycle and the redox evolu-tion of Earth's surface. Tracking the activity of sulfate reducing microorganisms overspace and time relies on a nuanced understanding of stable sulfur isotope fractiona-tion in the context of the biochemical machinery of the metabolism. Here, we link themagnitude of stable sulfur isotopic fractionation to proteomic and metabolite profilesunder different cellular energetic regimes. When energy availability is limited, cell-specific sulfate respiration rates and net sulfur isotope fractionation inversely covary. Beyond net S isotope fractionation values, we also quantified shifts in protein expres-sion, abundances and isotopic composition of intracellular S metabolites, and lipidstructures and lipid/water H isotope fractionation values. These coupled approachesreveal which protein abundances shift directly as a function of energy flux, those thatvary minimally, and those that may vary independent of energy flux and likely do notcontribute to shifts in S-isotope fractionation. By coupling the bulk S-isotope obser-vations with quantitative proteomics, we provide novel constraints for metabolic iso-tope models. Together, these results lay the foundation for more predictive metabolicfractionation models, alongside interpretations of environmental sulfur and sulfatereducer lipid-H isotope data.
info:eu-repo/semantics/publishedVersion
Fil: Leavitt, William D. Dartmouth College. Department of Earth Sciences, Hanover, New Hampshire; United States of America.
Fil: Leavitt, William D. Washington University in St. Louis. Department of Earth and Planetary Sciences, Missouri; United States of America.
Fil: Waldbauer, Jacob. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Venceslau, Sofia S. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Sim, Min Sub. Seoul National University. School of Earth and Environmental Sciences; South Korea.
Fil: Zhang, Lichun. University of Chicago. Department of the Geophysical Sciences, Illinois; United States of America.
Fil: Flavia Jaquelina Boidi. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Flavia Jaquelina Boidi. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales. Centro de Investigaciones en Ciencias de la Tierra; Argentina.
Fil: Flavia Jaquelina Boidi. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina.
Fil: Plummer, Sydney. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Díaz, Julia M. University of California, San Diego, La Jolla. Scripps Institution of Oceanography, California; United States of America.
Fil: Pereira, Inês A. C. Universidade Nova de Lisboa. Instituto de Tecnologia Química e Biológica António Xavier, Oeiras; Portugal.
Fil: Bradley, Alexander S. Washington University in St. Louis. Department of Earth and Planetary Sciences; Missouri, United States of America.
Fil: Bradley, Alexander S. Washington University in St. Louis. Division of Biology and Biomedical Sciences, Missouri; United States of America.
description Fil: Leavitt, William D. Dartmouth College. Department of Earth Sciences, Hanover, New Hampshire; United States of America.
publishDate 2024
dc.date.none.fl_str_mv 2024
dc.type.none.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
status_str publishedVersion
format article
dc.identifier.none.fl_str_mv Leavitt, W. D., Waldbauer, J.,Venceslau, S. S., Sim, M. S., Zhang, L., Boidi, F. J., Plummer, S.,Diaz, J. M., Pereira, I. A. C., & Bradley, A. S. (2024). Energyflux couples sulfur isotope fractionation to proteomic andmetabolite profiles in Desulfovibrio vulgaris. Geobiology, 22,e12600. https://doi.org/10.1111/gbi.12600
1472-4677
http://hdl.handle.net/11086/553191
1472-4669
https://doi.org/10.1111/gbi.12600
identifier_str_mv Leavitt, W. D., Waldbauer, J.,Venceslau, S. S., Sim, M. S., Zhang, L., Boidi, F. J., Plummer, S.,Diaz, J. M., Pereira, I. A. C., & Bradley, A. S. (2024). Energyflux couples sulfur isotope fractionation to proteomic andmetabolite profiles in Desulfovibrio vulgaris. Geobiology, 22,e12600. https://doi.org/10.1111/gbi.12600
1472-4677
1472-4669
url http://hdl.handle.net/11086/553191
https://doi.org/10.1111/gbi.12600
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositorio Digital Universitario (UNC)
instname:Universidad Nacional de Córdoba
instacron:UNC
reponame_str Repositorio Digital Universitario (UNC)
collection Repositorio Digital Universitario (UNC)
instname_str Universidad Nacional de Córdoba
instacron_str UNC
institution UNC
repository.name.fl_str_mv Repositorio Digital Universitario (UNC) - Universidad Nacional de Córdoba
repository.mail.fl_str_mv oca.unc@gmail.com
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