Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines

Autores
Olmos, Sofí­a Eugenia; Delucchi, Carla; Ravera, Melina Andrea; Negri, Maria Emilia; Mandolino, Cecilia Ines; Eyherabide, Guillermo
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Genetic diversity of an Argentinean public temperate inbred maize collection has not been previously assessed. This collection includes mainly locally developed orange flint germplasm and a group of temperate inbred lines introduced from the US or derived from selection of crosses to genetic stocks from other countries, providing representativeness of exotic gene pools. To establish heterotic groups and patterns for breeding purposes and to assess genetic structure and relatedness for association-mapping studies, a public panel of a 103 maize inbreds was characterized using 50 microsatellite markers and pedigree information. By means of clustering-based and model-based methods the flint germplasm collection was split into two subpopulations that were separated from the BSSS-BS13-related lines. Relatedness estimates with coancestry and kinship coefficients provided additional information in the case of structured mixed membership of some germplasm. These three main subpopulations were in agreement with prior pedigree records. Allele diversity was high and sufficient to give major, minor and specific allele profiles to characterize inbred lines. Convenience of the use of minor allele frequency for structure and relatedness assessment is also discussed. In addition, molecular characterization provided useful information to elucidate inbred ancestry origins of germplasm with unknown pedigree records and to group them into known heterotic groups to define heterotic patterns.
Fil: Olmos, Sofí­a Eugenia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Delucchi, Carla. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Ravera, Melina Andrea. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Negri, Maria Emilia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Mandolino, Cecilia Ines. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Eyherabide, Guillermo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fuente
Maydica 59 (1) : 16-31. (2014)
Materia
Zea Mays
Líneas Puras
Variación Genética
Germoplasma
Alelos
Microsatélites
Pure Lines
Genetic Variation
Germplasm
Alleles
Microsatellites
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/972
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spelling Genetic relatedness and population structure within the public Argentinean collection of maize inbred linesOlmos, Sofí­a EugeniaDelucchi, CarlaRavera, Melina AndreaNegri, Maria EmiliaMandolino, Cecilia InesEyherabide, GuillermoZea MaysLíneas PurasVariación GenéticaGermoplasmaAlelosMicrosatélitesPure LinesGenetic VariationGermplasmAllelesMicrosatellitesGenetic diversity of an Argentinean public temperate inbred maize collection has not been previously assessed. This collection includes mainly locally developed orange flint germplasm and a group of temperate inbred lines introduced from the US or derived from selection of crosses to genetic stocks from other countries, providing representativeness of exotic gene pools. To establish heterotic groups and patterns for breeding purposes and to assess genetic structure and relatedness for association-mapping studies, a public panel of a 103 maize inbreds was characterized using 50 microsatellite markers and pedigree information. By means of clustering-based and model-based methods the flint germplasm collection was split into two subpopulations that were separated from the BSSS-BS13-related lines. Relatedness estimates with coancestry and kinship coefficients provided additional information in the case of structured mixed membership of some germplasm. These three main subpopulations were in agreement with prior pedigree records. Allele diversity was high and sufficient to give major, minor and specific allele profiles to characterize inbred lines. Convenience of the use of minor allele frequency for structure and relatedness assessment is also discussed. In addition, molecular characterization provided useful information to elucidate inbred ancestry origins of germplasm with unknown pedigree records and to group them into known heterotic groups to define heterotic patterns.Fil: Olmos, Sofí­a Eugenia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; ArgentinaFil: Delucchi, Carla. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; ArgentinaFil: Ravera, Melina Andrea. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; ArgentinaFil: Negri, Maria Emilia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; ArgentinaFil: Mandolino, Cecilia Ines. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; ArgentinaFil: Eyherabide, Guillermo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina2017-08-15T15:47:57Z2017-08-15T15:47:57Z2014info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/972https://journals-crea.4science.it/index.php/maydica/article/view/9652279-8013Maydica 59 (1) : 16-31. (2014)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-04T09:46:57Zoai:localhost:20.500.12123/972instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:46:58.313INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
title Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
spellingShingle Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
Olmos, Sofí­a Eugenia
Zea Mays
Líneas Puras
Variación Genética
Germoplasma
Alelos
Microsatélites
Pure Lines
Genetic Variation
Germplasm
Alleles
Microsatellites
title_short Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
title_full Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
title_fullStr Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
title_full_unstemmed Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
title_sort Genetic relatedness and population structure within the public Argentinean collection of maize inbred lines
dc.creator.none.fl_str_mv Olmos, Sofí­a Eugenia
Delucchi, Carla
Ravera, Melina Andrea
Negri, Maria Emilia
Mandolino, Cecilia Ines
Eyherabide, Guillermo
author Olmos, Sofí­a Eugenia
author_facet Olmos, Sofí­a Eugenia
Delucchi, Carla
Ravera, Melina Andrea
Negri, Maria Emilia
Mandolino, Cecilia Ines
Eyherabide, Guillermo
author_role author
author2 Delucchi, Carla
Ravera, Melina Andrea
Negri, Maria Emilia
Mandolino, Cecilia Ines
Eyherabide, Guillermo
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv Zea Mays
Líneas Puras
Variación Genética
Germoplasma
Alelos
Microsatélites
Pure Lines
Genetic Variation
Germplasm
Alleles
Microsatellites
topic Zea Mays
Líneas Puras
Variación Genética
Germoplasma
Alelos
Microsatélites
Pure Lines
Genetic Variation
Germplasm
Alleles
Microsatellites
dc.description.none.fl_txt_mv Genetic diversity of an Argentinean public temperate inbred maize collection has not been previously assessed. This collection includes mainly locally developed orange flint germplasm and a group of temperate inbred lines introduced from the US or derived from selection of crosses to genetic stocks from other countries, providing representativeness of exotic gene pools. To establish heterotic groups and patterns for breeding purposes and to assess genetic structure and relatedness for association-mapping studies, a public panel of a 103 maize inbreds was characterized using 50 microsatellite markers and pedigree information. By means of clustering-based and model-based methods the flint germplasm collection was split into two subpopulations that were separated from the BSSS-BS13-related lines. Relatedness estimates with coancestry and kinship coefficients provided additional information in the case of structured mixed membership of some germplasm. These three main subpopulations were in agreement with prior pedigree records. Allele diversity was high and sufficient to give major, minor and specific allele profiles to characterize inbred lines. Convenience of the use of minor allele frequency for structure and relatedness assessment is also discussed. In addition, molecular characterization provided useful information to elucidate inbred ancestry origins of germplasm with unknown pedigree records and to group them into known heterotic groups to define heterotic patterns.
Fil: Olmos, Sofí­a Eugenia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Delucchi, Carla. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Ravera, Melina Andrea. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Negri, Maria Emilia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Mandolino, Cecilia Ines. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
Fil: Eyherabide, Guillermo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino; Argentina
description Genetic diversity of an Argentinean public temperate inbred maize collection has not been previously assessed. This collection includes mainly locally developed orange flint germplasm and a group of temperate inbred lines introduced from the US or derived from selection of crosses to genetic stocks from other countries, providing representativeness of exotic gene pools. To establish heterotic groups and patterns for breeding purposes and to assess genetic structure and relatedness for association-mapping studies, a public panel of a 103 maize inbreds was characterized using 50 microsatellite markers and pedigree information. By means of clustering-based and model-based methods the flint germplasm collection was split into two subpopulations that were separated from the BSSS-BS13-related lines. Relatedness estimates with coancestry and kinship coefficients provided additional information in the case of structured mixed membership of some germplasm. These three main subpopulations were in agreement with prior pedigree records. Allele diversity was high and sufficient to give major, minor and specific allele profiles to characterize inbred lines. Convenience of the use of minor allele frequency for structure and relatedness assessment is also discussed. In addition, molecular characterization provided useful information to elucidate inbred ancestry origins of germplasm with unknown pedigree records and to group them into known heterotic groups to define heterotic patterns.
publishDate 2014
dc.date.none.fl_str_mv 2014
2017-08-15T15:47:57Z
2017-08-15T15:47:57Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/972
https://journals-crea.4science.it/index.php/maydica/article/view/965
2279-8013
url http://hdl.handle.net/20.500.12123/972
https://journals-crea.4science.it/index.php/maydica/article/view/965
identifier_str_mv 2279-8013
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Maydica 59 (1) : 16-31. (2014)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.623145

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