Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba

Autores
Cabrera Mederos, Dariel; Giolitti, Fabian; Torres, Carolina; Portal, Orelvis
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Orchard and garden papaya crops grown in 47 Cuban municipalities were surveyed from 2008 to 2013, revealing the widespread distribution of papaya ringspot virus (PRSV) in Cuba. Phylodynamic analyses performed with the partial coat protein gene of all Cuban PRSV‐P isolates (34 sequences) and 107 sequences of isolates from the American continent and the Caribbean islands showed a most recent common ancestor in 1942 (95% highest posterior density, HPD 95% = 1911–1967). The substitution rate was estimated to be 7.7 × 10−4 substitutions per site per year (HPD 95% = 4.6 × 10−4 to 1.1 × 10−3), which is equivalent to those detected in other RNA viruses. Demographic reconstruction of PRSV showed that viral diversity increased in the 1985–1990 period, which coincides with the implementation of extensive production practices. Moreover in Cuba, viral dispersion occurred from Mexico and other unknown ancestral locations. The spatiotemporal diffusion analysis proposed Mexico as an ancestral area for the origin of diversification in the American continent and suggests new dispersion events between American and Caribbean isolates. The observed widespread distribution, clear geographic grouping of Cuban isolates, virus growth and genetic diversity provide strong evidence of the PRSV dispersion patterns, which has implications for the control strategies of PRSV.
Instituto de Patología Vegetal
Fil: Cabrera Mederos, Dariel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Central “Marta Abreu” de Las Villas. Facultad de Ciencias Agropecuarias. Departamento de Agronomía; Cuba
Fil: Giolitti, Fabian. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Torres, Carolina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Cátedra de Virología; Argentina
Fil: Portal, Orelvis. Universidad Central “Marta Abreu” de Las Villas. Facultad de Ciencias Agropecuarias. Departamento de Biología; Cuba
Fuente
Plant pathology. (08 September 2018)
Materia
Carica Papaya
Papayas
Virus de las Plantas
Virus de la Mancha de Anillo de la Papaya
Plant Viruses
Papaya Ringspot Virus
Cuba
Análisis Filodinámico
Phylodynamic Analysis
Nivel de accesibilidad
acceso restringido
Condiciones de uso
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/3695
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spelling Distribution and phylodynamics of papaya ringspot virus on Carica papaya in CubaCabrera Mederos, DarielGiolitti, FabianTorres, CarolinaPortal, OrelvisCarica PapayaPapayasVirus de las PlantasVirus de la Mancha de Anillo de la PapayaPlant VirusesPapaya Ringspot VirusCubaAnálisis FilodinámicoPhylodynamic AnalysisOrchard and garden papaya crops grown in 47 Cuban municipalities were surveyed from 2008 to 2013, revealing the widespread distribution of papaya ringspot virus (PRSV) in Cuba. Phylodynamic analyses performed with the partial coat protein gene of all Cuban PRSV‐P isolates (34 sequences) and 107 sequences of isolates from the American continent and the Caribbean islands showed a most recent common ancestor in 1942 (95% highest posterior density, HPD 95% = 1911–1967). The substitution rate was estimated to be 7.7 × 10−4 substitutions per site per year (HPD 95% = 4.6 × 10−4 to 1.1 × 10−3), which is equivalent to those detected in other RNA viruses. Demographic reconstruction of PRSV showed that viral diversity increased in the 1985–1990 period, which coincides with the implementation of extensive production practices. Moreover in Cuba, viral dispersion occurred from Mexico and other unknown ancestral locations. The spatiotemporal diffusion analysis proposed Mexico as an ancestral area for the origin of diversification in the American continent and suggests new dispersion events between American and Caribbean isolates. The observed widespread distribution, clear geographic grouping of Cuban isolates, virus growth and genetic diversity provide strong evidence of the PRSV dispersion patterns, which has implications for the control strategies of PRSV.Instituto de Patología VegetalFil: Cabrera Mederos, Dariel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Central “Marta Abreu” de Las Villas. Facultad de Ciencias Agropecuarias. Departamento de Agronomía; CubaFil: Giolitti, Fabian. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; ArgentinaFil: Torres, Carolina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Cátedra de Virología; ArgentinaFil: Portal, Orelvis. Universidad Central “Marta Abreu” de Las Villas. Facultad de Ciencias Agropecuarias. Departamento de Biología; CubaWiley; British Society for Plant Pathology2018-10-24T14:21:12Z2018-10-24T14:21:12Z2018-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/36951365-3059https://doi.org/10.1111/ppa.12942Plant pathology. (08 September 2018)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccess2025-09-04T09:47:37Zoai:localhost:20.500.12123/3695instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:47:38.431INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
title Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
spellingShingle Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
Cabrera Mederos, Dariel
Carica Papaya
Papayas
Virus de las Plantas
Virus de la Mancha de Anillo de la Papaya
Plant Viruses
Papaya Ringspot Virus
Cuba
Análisis Filodinámico
Phylodynamic Analysis
title_short Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
title_full Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
title_fullStr Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
title_full_unstemmed Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
title_sort Distribution and phylodynamics of papaya ringspot virus on Carica papaya in Cuba
dc.creator.none.fl_str_mv Cabrera Mederos, Dariel
Giolitti, Fabian
Torres, Carolina
Portal, Orelvis
author Cabrera Mederos, Dariel
author_facet Cabrera Mederos, Dariel
Giolitti, Fabian
Torres, Carolina
Portal, Orelvis
author_role author
author2 Giolitti, Fabian
Torres, Carolina
Portal, Orelvis
author2_role author
author
author
dc.subject.none.fl_str_mv Carica Papaya
Papayas
Virus de las Plantas
Virus de la Mancha de Anillo de la Papaya
Plant Viruses
Papaya Ringspot Virus
Cuba
Análisis Filodinámico
Phylodynamic Analysis
topic Carica Papaya
Papayas
Virus de las Plantas
Virus de la Mancha de Anillo de la Papaya
Plant Viruses
Papaya Ringspot Virus
Cuba
Análisis Filodinámico
Phylodynamic Analysis
dc.description.none.fl_txt_mv Orchard and garden papaya crops grown in 47 Cuban municipalities were surveyed from 2008 to 2013, revealing the widespread distribution of papaya ringspot virus (PRSV) in Cuba. Phylodynamic analyses performed with the partial coat protein gene of all Cuban PRSV‐P isolates (34 sequences) and 107 sequences of isolates from the American continent and the Caribbean islands showed a most recent common ancestor in 1942 (95% highest posterior density, HPD 95% = 1911–1967). The substitution rate was estimated to be 7.7 × 10−4 substitutions per site per year (HPD 95% = 4.6 × 10−4 to 1.1 × 10−3), which is equivalent to those detected in other RNA viruses. Demographic reconstruction of PRSV showed that viral diversity increased in the 1985–1990 period, which coincides with the implementation of extensive production practices. Moreover in Cuba, viral dispersion occurred from Mexico and other unknown ancestral locations. The spatiotemporal diffusion analysis proposed Mexico as an ancestral area for the origin of diversification in the American continent and suggests new dispersion events between American and Caribbean isolates. The observed widespread distribution, clear geographic grouping of Cuban isolates, virus growth and genetic diversity provide strong evidence of the PRSV dispersion patterns, which has implications for the control strategies of PRSV.
Instituto de Patología Vegetal
Fil: Cabrera Mederos, Dariel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Central “Marta Abreu” de Las Villas. Facultad de Ciencias Agropecuarias. Departamento de Agronomía; Cuba
Fil: Giolitti, Fabian. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Torres, Carolina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Cátedra de Virología; Argentina
Fil: Portal, Orelvis. Universidad Central “Marta Abreu” de Las Villas. Facultad de Ciencias Agropecuarias. Departamento de Biología; Cuba
description Orchard and garden papaya crops grown in 47 Cuban municipalities were surveyed from 2008 to 2013, revealing the widespread distribution of papaya ringspot virus (PRSV) in Cuba. Phylodynamic analyses performed with the partial coat protein gene of all Cuban PRSV‐P isolates (34 sequences) and 107 sequences of isolates from the American continent and the Caribbean islands showed a most recent common ancestor in 1942 (95% highest posterior density, HPD 95% = 1911–1967). The substitution rate was estimated to be 7.7 × 10−4 substitutions per site per year (HPD 95% = 4.6 × 10−4 to 1.1 × 10−3), which is equivalent to those detected in other RNA viruses. Demographic reconstruction of PRSV showed that viral diversity increased in the 1985–1990 period, which coincides with the implementation of extensive production practices. Moreover in Cuba, viral dispersion occurred from Mexico and other unknown ancestral locations. The spatiotemporal diffusion analysis proposed Mexico as an ancestral area for the origin of diversification in the American continent and suggests new dispersion events between American and Caribbean isolates. The observed widespread distribution, clear geographic grouping of Cuban isolates, virus growth and genetic diversity provide strong evidence of the PRSV dispersion patterns, which has implications for the control strategies of PRSV.
publishDate 2018
dc.date.none.fl_str_mv 2018-10-24T14:21:12Z
2018-10-24T14:21:12Z
2018-09
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/3695
1365-3059
https://doi.org/10.1111/ppa.12942
url http://hdl.handle.net/20.500.12123/3695
https://doi.org/10.1111/ppa.12942
identifier_str_mv 1365-3059
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
eu_rights_str_mv restrictedAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Wiley; British Society for Plant Pathology
publisher.none.fl_str_mv Wiley; British Society for Plant Pathology
dc.source.none.fl_str_mv Plant pathology. (08 September 2018)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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