Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum

Autores
Norero, Natalia Sigrid; Castellote, Martín Alfredo; de la Canal, Laura; Feingold, Sergio Enrique
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.
EEA Balcarce
Fil: Norero, Natalia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina
Fil: Castellote, Martín. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina
Fil: de la Canal, Laura. Universidad Nacional de Mar del Plata. Instituto de Investigaciones Biológicas; Argentina
Fil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina
Fuente
American Journal of Potato Research 93 (5) : 485-496 (2016)
Materia
Serina
Papa
Solanun tuberosum
Phytophthora infestans
Genes
Serine
Potatoes
Nivel de accesibilidad
acceso restringido
Condiciones de uso
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/3232
Acceder
id INTADig_c89029dad13e055bc88366c7268ed578
oai_identifier_str oai:localhost:20.500.12123/3232
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosumNorero, Natalia SigridCastellote, Martín Alfredode la Canal, LauraFeingold, Sergio EnriqueSerinaPapaSolanun tuberosumPhytophthora infestansGenesSerinePotatoesPlant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.EEA BalcarceFil: Norero, Natalia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; ArgentinaFil: Castellote, Martín. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; ArgentinaFil: de la Canal, Laura. Universidad Nacional de Mar del Plata. Instituto de Investigaciones Biológicas; ArgentinaFil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; ArgentinaSpringer Netherlands2018-08-29T13:15:19Z2018-08-29T13:15:19Z2016-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://link.springer.com/article/10.1007/s12230-016-9525-5http://hdl.handle.net/20.500.12123/32321099-209X1874-9380https://doi.org/10.1007/s12230-016-9525-5American Journal of Potato Research 93 (5) : 485-496 (2016)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccess2025-09-04T09:47:26Zoai:localhost:20.500.12123/3232instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:47:27.086INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
spellingShingle Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
Norero, Natalia Sigrid
Serina
Papa
Solanun tuberosum
Phytophthora infestans
Genes
Serine
Potatoes
title_short Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_full Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_fullStr Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_full_unstemmed Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_sort Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
dc.creator.none.fl_str_mv Norero, Natalia Sigrid
Castellote, Martín Alfredo
de la Canal, Laura
Feingold, Sergio Enrique
author Norero, Natalia Sigrid
author_facet Norero, Natalia Sigrid
Castellote, Martín Alfredo
de la Canal, Laura
Feingold, Sergio Enrique
author_role author
author2 Castellote, Martín Alfredo
de la Canal, Laura
Feingold, Sergio Enrique
author2_role author
author
author
dc.subject.none.fl_str_mv Serina
Papa
Solanun tuberosum
Phytophthora infestans
Genes
Serine
Potatoes
topic Serina
Papa
Solanun tuberosum
Phytophthora infestans
Genes
Serine
Potatoes
dc.description.none.fl_txt_mv Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.
EEA Balcarce
Fil: Norero, Natalia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina
Fil: Castellote, Martín. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina
Fil: de la Canal, Laura. Universidad Nacional de Mar del Plata. Instituto de Investigaciones Biológicas; Argentina
Fil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina
description Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.
publishDate 2016
dc.date.none.fl_str_mv 2016-10
2018-08-29T13:15:19Z
2018-08-29T13:15:19Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://link.springer.com/article/10.1007/s12230-016-9525-5
http://hdl.handle.net/20.500.12123/3232
1099-209X
1874-9380
https://doi.org/10.1007/s12230-016-9525-5
url https://link.springer.com/article/10.1007/s12230-016-9525-5
http://hdl.handle.net/20.500.12123/3232
https://doi.org/10.1007/s12230-016-9525-5
identifier_str_mv 1099-209X
1874-9380
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
eu_rights_str_mv restrictedAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer Netherlands
publisher.none.fl_str_mv Springer Netherlands
dc.source.none.fl_str_mv American Journal of Potato Research 93 (5) : 485-496 (2016)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
_version_ 1842341358163984384
score 12.623145

Publicaciones similares