Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
- Autores
- Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio
- Año de publicación
- 2016
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.
Fil: Norero, Natalia Sigrid. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Castellote, Martin Alfredo. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina
Fil: de la Canal, Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina - Materia
-
Intronless
Metaqtl
Phytophthora_Infestans
Potato
Subtilases - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/62635
Ver los metadatos del registro completo
id |
CONICETDig_6bd1c43f1c7b968e0fe774fa2f6ac54b |
---|---|
oai_identifier_str |
oai:ri.conicet.gov.ar:11336/62635 |
network_acronym_str |
CONICETDig |
repository_id_str |
3498 |
network_name_str |
CONICET Digital (CONICET) |
spelling |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosumNorero, Natalia SigridCastellote, Martin Alfredode la Canal, LauraFeingold, SergioIntronlessMetaqtlPhytophthora_InfestansPotatoSubtilaseshttps://purl.org/becyt/ford/4.4https://purl.org/becyt/ford/4Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.Fil: Norero, Natalia Sigrid. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Castellote, Martin Alfredo. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; ArgentinaFil: de la Canal, Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; ArgentinaFil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; ArgentinaSpringer2016-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/62635Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio; Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum; Springer; American Journal Of Potato Research; 93; 5; 10-2016; 485-4961099-209X1874-9380CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1007/s12230-016-9525-5info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007%2Fs12230-016-9525-5info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:47:22Zoai:ri.conicet.gov.ar:11336/62635instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:47:23.107CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
title |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
spellingShingle |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum Norero, Natalia Sigrid Intronless Metaqtl Phytophthora_Infestans Potato Subtilases |
title_short |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
title_full |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
title_fullStr |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
title_full_unstemmed |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
title_sort |
Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
dc.creator.none.fl_str_mv |
Norero, Natalia Sigrid Castellote, Martin Alfredo de la Canal, Laura Feingold, Sergio |
author |
Norero, Natalia Sigrid |
author_facet |
Norero, Natalia Sigrid Castellote, Martin Alfredo de la Canal, Laura Feingold, Sergio |
author_role |
author |
author2 |
Castellote, Martin Alfredo de la Canal, Laura Feingold, Sergio |
author2_role |
author author author |
dc.subject.none.fl_str_mv |
Intronless Metaqtl Phytophthora_Infestans Potato Subtilases |
topic |
Intronless Metaqtl Phytophthora_Infestans Potato Subtilases |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/4.4 https://purl.org/becyt/ford/4 |
dc.description.none.fl_txt_mv |
Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato. Fil: Norero, Natalia Sigrid. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Castellote, Martin Alfredo. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina Fil: de la Canal, Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina Fil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina |
description |
Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-10 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/62635 Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio; Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum; Springer; American Journal Of Potato Research; 93; 5; 10-2016; 485-496 1099-209X 1874-9380 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/62635 |
identifier_str_mv |
Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio; Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum; Springer; American Journal Of Potato Research; 93; 5; 10-2016; 485-496 1099-209X 1874-9380 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/doi/10.1007/s12230-016-9525-5 info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007%2Fs12230-016-9525-5 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Springer |
publisher.none.fl_str_mv |
Springer |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
_version_ |
1842268855004561408 |
score |
13.13397 |