Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum

Autores
Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.
Fil: Norero, Natalia Sigrid. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Castellote, Martin Alfredo. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina
Fil: de la Canal, Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina
Materia
Intronless
Metaqtl
Phytophthora_Infestans
Potato
Subtilases
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/62635
Acceder
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network_acronym_str CONICETDig
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network_name_str CONICET Digital (CONICET)
spelling Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosumNorero, Natalia SigridCastellote, Martin Alfredode la Canal, LauraFeingold, SergioIntronlessMetaqtlPhytophthora_InfestansPotatoSubtilaseshttps://purl.org/becyt/ford/4.4https://purl.org/becyt/ford/4Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.Fil: Norero, Natalia Sigrid. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Castellote, Martin Alfredo. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; ArgentinaFil: de la Canal, Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; ArgentinaFil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; ArgentinaSpringer2016-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/62635Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio; Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum; Springer; American Journal Of Potato Research; 93; 5; 10-2016; 485-4961099-209X1874-9380CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1007/s12230-016-9525-5info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007%2Fs12230-016-9525-5info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:39:24Zoai:ri.conicet.gov.ar:11336/62635instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:39:24.53CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
spellingShingle Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
Norero, Natalia Sigrid
Intronless
Metaqtl
Phytophthora_Infestans
Potato
Subtilases
title_short Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_full Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_fullStr Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_full_unstemmed Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
title_sort Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
dc.creator.none.fl_str_mv Norero, Natalia Sigrid
Castellote, Martin Alfredo
de la Canal, Laura
Feingold, Sergio
author Norero, Natalia Sigrid
author_facet Norero, Natalia Sigrid
Castellote, Martin Alfredo
de la Canal, Laura
Feingold, Sergio
author_role author
author2 Castellote, Martin Alfredo
de la Canal, Laura
Feingold, Sergio
author2_role author
author
author
dc.subject.none.fl_str_mv Intronless
Metaqtl
Phytophthora_Infestans
Potato
Subtilases
topic Intronless
Metaqtl
Phytophthora_Infestans
Potato
Subtilases
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.4
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.
Fil: Norero, Natalia Sigrid. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Castellote, Martin Alfredo. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina
Fil: de la Canal, Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires Sur. Estación Experimental Agropecuaria Balcarce; Argentina
description Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato.
publishDate 2016
dc.date.none.fl_str_mv 2016-10
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/62635
Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio; Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum; Springer; American Journal Of Potato Research; 93; 5; 10-2016; 485-496
1099-209X
1874-9380
CONICET Digital
CONICET
url http://hdl.handle.net/11336/62635
identifier_str_mv Norero, Natalia Sigrid; Castellote, Martin Alfredo; de la Canal, Laura; Feingold, Sergio; Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum; Springer; American Journal Of Potato Research; 93; 5; 10-2016; 485-496
1099-209X
1874-9380
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1007/s12230-016-9525-5
info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007%2Fs12230-016-9525-5
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.069144

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