A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation

Autores
Cavagnaro, Pablo; Iorizzo, Massimo; Yildiz, Mehtap; Senalik, Douglas A.; Parsons, Joshua; Ellison, Shelby L.; Simon, Philipp W.
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Purple carrots accumulate large quantities of anthocyanins in their roots and leaves. These flavonoid pigments possess antioxidant activity and are implicated in providing health benefits. Informative, saturated linkage maps associated with well characterized populations segregating for anthocyanin pigmentation have not been developed. To investigate the genetic architecture conditioning anthocyanin pigmentation we scored root color visually, quantified root anthocyanin pigments by high performance liquid chromatography in segregating F2, F3 and F4 generations of a mapping population, mapped quantitative trait loci (QTL) onto a dense gene-derived single nucleotide polymorphism (SNP)-based linkage map, and performed comparative trait mapping with two unrelated populations.
EEA La Consulta
Fil: Cavagnaro, Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria La Consulta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias; Argentina. University of Wisconsin. Department of Horticulture; Estados Unidos
Fil: Iorizzo, Massimo. University of Wisconsin. Department of Horticulture; Estados Unidos.
Fil: Yildiz, Mehtap. Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Senalik, Douglas. University of Wisconsin. Department of Horticulture; Estados Unidos. United States Department of Agriculture–Agricultural Research Service. Vegetable Crops Research Unit; Estados Unidos
Fil: Parsons, Joshua. University of Wisconsin. Department of Horticulture; Estados Unidos
Fil: Ellison, Shelby. University of Wisconsin. Department of Horticulture; Estados Unidos
Fil: Simon, Philipp. University of Wisconsin. Department of Horticulture; Estados Unidos. United States Department of Agriculture–Agricultural Research Service. Vegetable Crops Research Unit; Estados Unidos
Fuente
BMC Genomics 15 : 1118 (December 2014)
Materia
Zanahoria
Genomas
Loci de Rasgos Cuantitativos
Antocianinas
Pigmentación
Carrots
Genomes
Quantitative Trait Loci
Anthocyanins
Pigmentation
QTL
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/2084
Acceder
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network_acronym_str INTADig
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network_name_str INTA Digital (INTA)
spelling A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentationCavagnaro, PabloIorizzo, MassimoYildiz, MehtapSenalik, Douglas A.Parsons, JoshuaEllison, Shelby L.Simon, Philipp W.ZanahoriaGenomasLoci de Rasgos CuantitativosAntocianinasPigmentaciónCarrotsGenomesQuantitative Trait LociAnthocyaninsPigmentationQTLPurple carrots accumulate large quantities of anthocyanins in their roots and leaves. These flavonoid pigments possess antioxidant activity and are implicated in providing health benefits. Informative, saturated linkage maps associated with well characterized populations segregating for anthocyanin pigmentation have not been developed. To investigate the genetic architecture conditioning anthocyanin pigmentation we scored root color visually, quantified root anthocyanin pigments by high performance liquid chromatography in segregating F2, F3 and F4 generations of a mapping population, mapped quantitative trait loci (QTL) onto a dense gene-derived single nucleotide polymorphism (SNP)-based linkage map, and performed comparative trait mapping with two unrelated populations.EEA La ConsultaFil: Cavagnaro, Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria La Consulta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias; Argentina. University of Wisconsin. Department of Horticulture; Estados UnidosFil: Iorizzo, Massimo. University of Wisconsin. Department of Horticulture; Estados Unidos.Fil: Yildiz, Mehtap. Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; TurquíaFil: Senalik, Douglas. University of Wisconsin. Department of Horticulture; Estados Unidos. United States Department of Agriculture–Agricultural Research Service. Vegetable Crops Research Unit; Estados UnidosFil: Parsons, Joshua. University of Wisconsin. Department of Horticulture; Estados UnidosFil: Ellison, Shelby. University of Wisconsin. Department of Horticulture; Estados UnidosFil: Simon, Philipp. University of Wisconsin. Department of Horticulture; Estados Unidos. United States Department of Agriculture–Agricultural Research Service. Vegetable Crops Research Unit; Estados Unidos2018-03-20T14:35:13Z2018-03-20T14:35:13Z2014-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-1118http://hdl.handle.net/20.500.12123/20841471-2164https://doi.org/10.1186/1471-2164-15-1118BMC Genomics 15 : 1118 (December 2014)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:44:16Zoai:localhost:20.500.12123/2084instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:44:16.65INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
title A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
spellingShingle A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
Cavagnaro, Pablo
Zanahoria
Genomas
Loci de Rasgos Cuantitativos
Antocianinas
Pigmentación
Carrots
Genomes
Quantitative Trait Loci
Anthocyanins
Pigmentation
QTL
title_short A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
title_full A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
title_fullStr A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
title_full_unstemmed A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
title_sort A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation
dc.creator.none.fl_str_mv Cavagnaro, Pablo
Iorizzo, Massimo
Yildiz, Mehtap
Senalik, Douglas A.
Parsons, Joshua
Ellison, Shelby L.
Simon, Philipp W.
author Cavagnaro, Pablo
author_facet Cavagnaro, Pablo
Iorizzo, Massimo
Yildiz, Mehtap
Senalik, Douglas A.
Parsons, Joshua
Ellison, Shelby L.
Simon, Philipp W.
author_role author
author2 Iorizzo, Massimo
Yildiz, Mehtap
Senalik, Douglas A.
Parsons, Joshua
Ellison, Shelby L.
Simon, Philipp W.
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv Zanahoria
Genomas
Loci de Rasgos Cuantitativos
Antocianinas
Pigmentación
Carrots
Genomes
Quantitative Trait Loci
Anthocyanins
Pigmentation
QTL
topic Zanahoria
Genomas
Loci de Rasgos Cuantitativos
Antocianinas
Pigmentación
Carrots
Genomes
Quantitative Trait Loci
Anthocyanins
Pigmentation
QTL
dc.description.none.fl_txt_mv Purple carrots accumulate large quantities of anthocyanins in their roots and leaves. These flavonoid pigments possess antioxidant activity and are implicated in providing health benefits. Informative, saturated linkage maps associated with well characterized populations segregating for anthocyanin pigmentation have not been developed. To investigate the genetic architecture conditioning anthocyanin pigmentation we scored root color visually, quantified root anthocyanin pigments by high performance liquid chromatography in segregating F2, F3 and F4 generations of a mapping population, mapped quantitative trait loci (QTL) onto a dense gene-derived single nucleotide polymorphism (SNP)-based linkage map, and performed comparative trait mapping with two unrelated populations.
EEA La Consulta
Fil: Cavagnaro, Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria La Consulta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias; Argentina. University of Wisconsin. Department of Horticulture; Estados Unidos
Fil: Iorizzo, Massimo. University of Wisconsin. Department of Horticulture; Estados Unidos.
Fil: Yildiz, Mehtap. Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Senalik, Douglas. University of Wisconsin. Department of Horticulture; Estados Unidos. United States Department of Agriculture–Agricultural Research Service. Vegetable Crops Research Unit; Estados Unidos
Fil: Parsons, Joshua. University of Wisconsin. Department of Horticulture; Estados Unidos
Fil: Ellison, Shelby. University of Wisconsin. Department of Horticulture; Estados Unidos
Fil: Simon, Philipp. University of Wisconsin. Department of Horticulture; Estados Unidos. United States Department of Agriculture–Agricultural Research Service. Vegetable Crops Research Unit; Estados Unidos
description Purple carrots accumulate large quantities of anthocyanins in their roots and leaves. These flavonoid pigments possess antioxidant activity and are implicated in providing health benefits. Informative, saturated linkage maps associated with well characterized populations segregating for anthocyanin pigmentation have not been developed. To investigate the genetic architecture conditioning anthocyanin pigmentation we scored root color visually, quantified root anthocyanin pigments by high performance liquid chromatography in segregating F2, F3 and F4 generations of a mapping population, mapped quantitative trait loci (QTL) onto a dense gene-derived single nucleotide polymorphism (SNP)-based linkage map, and performed comparative trait mapping with two unrelated populations.
publishDate 2014
dc.date.none.fl_str_mv 2014-12
2018-03-20T14:35:13Z
2018-03-20T14:35:13Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-1118
http://hdl.handle.net/20.500.12123/2084
1471-2164
https://doi.org/10.1186/1471-2164-15-1118
url https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-1118
http://hdl.handle.net/20.500.12123/2084
https://doi.org/10.1186/1471-2164-15-1118
identifier_str_mv 1471-2164
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv BMC Genomics 15 : 1118 (December 2014)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.558318

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