First draft genome of Thecaphora frezii, causal agent of peanut smut disease

Autores
Arias, Renee S.; Conforto, Erica Cinthia; Orner, Valerie A.; Carloni, Edgardo José; Soave, Juan H.; Massa, Alicia N.; Lamb, Marshall C.; Bernanrdi Lima, Nelson; Rago, Alejandro Mario
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Objectives: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance. Data description: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10.
Instituto de Patología Vegetal
Fil: Arias, Renee S. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Conforto, Erica Cinthia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Conforto, Erica Cinthia. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
Fil: Orner, Valerie A. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Carloni, Edgardo José. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina
Fil: Soave, Juan H. El Carmen S.A.; Argentina
Fil: Massa, Alicia N. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Lamb, Marshall C. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Bernanrdi Lima, Nelson. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
Fil: Bernanrdi Lima, Nelson. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Rago, Alejandro Mario. Instituto Nacional de Tecnología Agropecuaria (INTA). Centro de Investigaciones Agropecuarias (CIAP); Argentina
Fil: Rago, Alejandro Mario. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
Fuente
BMC Genom Data 24 : 9 (Published: 16 February 2023)
Materia
Genomes
Pathogens
Groundnuts
Fungi
Smuts
Genomas
Organismos Patógenos
Cacahuete
Hongos
Carbones
PacBio
Smut Disease
Maní
Thecaphora Frezii
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/14183
Acceder
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oai_identifier_str oai:localhost:20.500.12123/14183
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling First draft genome of Thecaphora frezii, causal agent of peanut smut diseaseArias, Renee S.Conforto, Erica CinthiaOrner, Valerie A.Carloni, Edgardo JoséSoave, Juan H.Massa, Alicia N.Lamb, Marshall C.Bernanrdi Lima, NelsonRago, Alejandro MarioGenomesPathogensGroundnutsFungiSmutsGenomasOrganismos PatógenosCacahueteHongosCarbonesPacBioSmut DiseaseManíThecaphora FreziiObjectives: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance. Data description: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10.Instituto de Patología VegetalFil: Arias, Renee S. USDA-ARS National Peanut Research Laboratory (NPRL); Estados UnidosFil: Conforto, Erica Cinthia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; ArgentinaFil: Conforto, Erica Cinthia. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); ArgentinaFil: Orner, Valerie A. USDA-ARS National Peanut Research Laboratory (NPRL); Estados UnidosFil: Carloni, Edgardo José. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; ArgentinaFil: Soave, Juan H. El Carmen S.A.; ArgentinaFil: Massa, Alicia N. USDA-ARS National Peanut Research Laboratory (NPRL); Estados UnidosFil: Lamb, Marshall C. USDA-ARS National Peanut Research Laboratory (NPRL); Estados UnidosFil: Bernanrdi Lima, Nelson. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); ArgentinaFil: Bernanrdi Lima, Nelson. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; ArgentinaFil: Rago, Alejandro Mario. Instituto Nacional de Tecnología Agropecuaria (INTA). Centro de Investigaciones Agropecuarias (CIAP); ArgentinaFil: Rago, Alejandro Mario. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); ArgentinaBMC2023-03-09T10:18:51Z2023-03-09T10:18:51Z2023-02-16info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/14183https://bmcgenomdata.biomedcentral.com/articles/10.1186/s12863-023-01113-w2730-6844 (online)https://doi.org/10.1186/s12863-023-01113-wBMC Genom Data 24 : 9 (Published: 16 February 2023)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-04T09:49:45Zoai:localhost:20.500.12123/14183instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:49:45.995INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title First draft genome of Thecaphora frezii, causal agent of peanut smut disease
spellingShingle First draft genome of Thecaphora frezii, causal agent of peanut smut disease
Arias, Renee S.
Genomes
Pathogens
Groundnuts
Fungi
Smuts
Genomas
Organismos Patógenos
Cacahuete
Hongos
Carbones
PacBio
Smut Disease
Maní
Thecaphora Frezii
title_short First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_full First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_fullStr First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_full_unstemmed First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_sort First draft genome of Thecaphora frezii, causal agent of peanut smut disease
dc.creator.none.fl_str_mv Arias, Renee S.
Conforto, Erica Cinthia
Orner, Valerie A.
Carloni, Edgardo José
Soave, Juan H.
Massa, Alicia N.
Lamb, Marshall C.
Bernanrdi Lima, Nelson
Rago, Alejandro Mario
author Arias, Renee S.
author_facet Arias, Renee S.
Conforto, Erica Cinthia
Orner, Valerie A.
Carloni, Edgardo José
Soave, Juan H.
Massa, Alicia N.
Lamb, Marshall C.
Bernanrdi Lima, Nelson
Rago, Alejandro Mario
author_role author
author2 Conforto, Erica Cinthia
Orner, Valerie A.
Carloni, Edgardo José
Soave, Juan H.
Massa, Alicia N.
Lamb, Marshall C.
Bernanrdi Lima, Nelson
Rago, Alejandro Mario
author2_role author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Genomes
Pathogens
Groundnuts
Fungi
Smuts
Genomas
Organismos Patógenos
Cacahuete
Hongos
Carbones
PacBio
Smut Disease
Maní
Thecaphora Frezii
topic Genomes
Pathogens
Groundnuts
Fungi
Smuts
Genomas
Organismos Patógenos
Cacahuete
Hongos
Carbones
PacBio
Smut Disease
Maní
Thecaphora Frezii
dc.description.none.fl_txt_mv Objectives: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance. Data description: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10.
Instituto de Patología Vegetal
Fil: Arias, Renee S. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Conforto, Erica Cinthia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Conforto, Erica Cinthia. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
Fil: Orner, Valerie A. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Carloni, Edgardo José. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina
Fil: Soave, Juan H. El Carmen S.A.; Argentina
Fil: Massa, Alicia N. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Lamb, Marshall C. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos
Fil: Bernanrdi Lima, Nelson. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
Fil: Bernanrdi Lima, Nelson. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Rago, Alejandro Mario. Instituto Nacional de Tecnología Agropecuaria (INTA). Centro de Investigaciones Agropecuarias (CIAP); Argentina
Fil: Rago, Alejandro Mario. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina
description Objectives: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance. Data description: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10.
publishDate 2023
dc.date.none.fl_str_mv 2023-03-09T10:18:51Z
2023-03-09T10:18:51Z
2023-02-16
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/14183
https://bmcgenomdata.biomedcentral.com/articles/10.1186/s12863-023-01113-w
2730-6844 (online)
https://doi.org/10.1186/s12863-023-01113-w
url http://hdl.handle.net/20.500.12123/14183
https://bmcgenomdata.biomedcentral.com/articles/10.1186/s12863-023-01113-w
https://doi.org/10.1186/s12863-023-01113-w
identifier_str_mv 2730-6844 (online)
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BMC
publisher.none.fl_str_mv BMC
dc.source.none.fl_str_mv BMC Genom Data 24 : 9 (Published: 16 February 2023)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.623145

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