Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping

Autores
Vicentin, Ignacio Gabriel; Ghione, Celina Elena; Cuatrin, Alejandra; Gilli, Javier Ramon; Bernardi, Clarisa Noelia; De Lucia, Adrían Darío; Heinz, Ruth Amelia
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Adaptation to temporal stress can be achieved by modifying flowering time and lengthening the reproductive period. To identify genotypes, molecular markers, and genes related with these traits, a set of 94 soybeans were genotyped using 7125 SNPs and 6465 DArTs. The genotypes were grouped according to their duration cycle (cycle) and were analyzed, days from emergence to beginning bloom (E–R1), days from beginning bloom to beginning pod (R1–R3), and days from beginning pod to full seed (R3–R6), identifying fifty-six genotypes with short E–R1 (Sh.E–R1) and/or prolonged R1–R3 and R3–R6 (L.R1–R3 and L.R3–R6). The population structure determined with 14 SSR markers that best adjusted was K = 2. For a total of 203 markers associated with Sh.E–R1, L.R1–R3, and L.R3–R6, 1221 candidate genes were identified, of which 17 were previously cited and/or containing markers located in their sequence and were selected for future studies. Splitting the reproductive period in two phases allowed the detection of variability through it. It was verified the existence of genotypes with early bloom and/or prolonged reproductive period within germplasm with similar cycle. The genotypes identified, molecular markers, and associated genes can be used in breeding programs to extend the reproductive period in soybean.
EEA Paraná
Fil: Vicentin, Ignacio Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Paraná; Argentina
Fil: Ghione, Celina Elena. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: Cuatrin, Alejandra. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Paraná; Argentina.
Fil: Gilli, Javier Ramon. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: Bernardi, Clarisa Noelia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: De Lucia, Adrían Darío. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Cerro Azul; Argentina
Fil: Heinz, Ruth Amelia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina.
Fuente
Plant Molecular Biology Reporter 41 : 229-241. (2023)
Materia
Soja
Marcadores Genéticos
Genes Candidatos
Floración
Mapeo de Asociación
Soybeans
Genetic Markers
Candidate Genes
Flowering
Association Mapping
Marcadores Moleculares
Nivel de accesibilidad
acceso restringido
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/14639
Acceder
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oai_identifier_str oai:localhost:20.500.12123/14639
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association MappingVicentin, Ignacio GabrielGhione, Celina ElenaCuatrin, AlejandraGilli, Javier RamonBernardi, Clarisa NoeliaDe Lucia, Adrían DaríoHeinz, Ruth AmeliaSojaMarcadores GenéticosGenes CandidatosFloraciónMapeo de AsociaciónSoybeansGenetic MarkersCandidate GenesFloweringAssociation MappingMarcadores MolecularesAdaptation to temporal stress can be achieved by modifying flowering time and lengthening the reproductive period. To identify genotypes, molecular markers, and genes related with these traits, a set of 94 soybeans were genotyped using 7125 SNPs and 6465 DArTs. The genotypes were grouped according to their duration cycle (cycle) and were analyzed, days from emergence to beginning bloom (E–R1), days from beginning bloom to beginning pod (R1–R3), and days from beginning pod to full seed (R3–R6), identifying fifty-six genotypes with short E–R1 (Sh.E–R1) and/or prolonged R1–R3 and R3–R6 (L.R1–R3 and L.R3–R6). The population structure determined with 14 SSR markers that best adjusted was K = 2. For a total of 203 markers associated with Sh.E–R1, L.R1–R3, and L.R3–R6, 1221 candidate genes were identified, of which 17 were previously cited and/or containing markers located in their sequence and were selected for future studies. Splitting the reproductive period in two phases allowed the detection of variability through it. It was verified the existence of genotypes with early bloom and/or prolonged reproductive period within germplasm with similar cycle. The genotypes identified, molecular markers, and associated genes can be used in breeding programs to extend the reproductive period in soybean.EEA ParanáFil: Vicentin, Ignacio Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Paraná; ArgentinaFil: Ghione, Celina Elena. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; ArgentinaFil: Cuatrin, Alejandra. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Paraná; Argentina.Fil: Gilli, Javier Ramon. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; ArgentinaFil: Bernardi, Clarisa Noelia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; ArgentinaFil: De Lucia, Adrían Darío. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Cerro Azul; ArgentinaFil: Heinz, Ruth Amelia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina.Springer2023-06-21T10:52:24Z2023-06-21T10:52:24Z2023-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/14639https://link.springer.com/article/10.1007/s11105-022-01361-70735-96401572-9818https://doi.org/10.1007/s11105-022-01361-7Plant Molecular Biology Reporter 41 : 229-241. (2023)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:45:59Zoai:localhost:20.500.12123/14639instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:45:59.786INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
title Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
spellingShingle Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
Vicentin, Ignacio Gabriel
Soja
Marcadores Genéticos
Genes Candidatos
Floración
Mapeo de Asociación
Soybeans
Genetic Markers
Candidate Genes
Flowering
Association Mapping
Marcadores Moleculares
title_short Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
title_full Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
title_fullStr Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
title_full_unstemmed Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
title_sort Identification of Molecular Markers and Candidate Genes Associated with Time to Flowering and Length of Reproductive Period in Soybean Through Association Mapping
dc.creator.none.fl_str_mv Vicentin, Ignacio Gabriel
Ghione, Celina Elena
Cuatrin, Alejandra
Gilli, Javier Ramon
Bernardi, Clarisa Noelia
De Lucia, Adrían Darío
Heinz, Ruth Amelia
author Vicentin, Ignacio Gabriel
author_facet Vicentin, Ignacio Gabriel
Ghione, Celina Elena
Cuatrin, Alejandra
Gilli, Javier Ramon
Bernardi, Clarisa Noelia
De Lucia, Adrían Darío
Heinz, Ruth Amelia
author_role author
author2 Ghione, Celina Elena
Cuatrin, Alejandra
Gilli, Javier Ramon
Bernardi, Clarisa Noelia
De Lucia, Adrían Darío
Heinz, Ruth Amelia
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv Soja
Marcadores Genéticos
Genes Candidatos
Floración
Mapeo de Asociación
Soybeans
Genetic Markers
Candidate Genes
Flowering
Association Mapping
Marcadores Moleculares
topic Soja
Marcadores Genéticos
Genes Candidatos
Floración
Mapeo de Asociación
Soybeans
Genetic Markers
Candidate Genes
Flowering
Association Mapping
Marcadores Moleculares
dc.description.none.fl_txt_mv Adaptation to temporal stress can be achieved by modifying flowering time and lengthening the reproductive period. To identify genotypes, molecular markers, and genes related with these traits, a set of 94 soybeans were genotyped using 7125 SNPs and 6465 DArTs. The genotypes were grouped according to their duration cycle (cycle) and were analyzed, days from emergence to beginning bloom (E–R1), days from beginning bloom to beginning pod (R1–R3), and days from beginning pod to full seed (R3–R6), identifying fifty-six genotypes with short E–R1 (Sh.E–R1) and/or prolonged R1–R3 and R3–R6 (L.R1–R3 and L.R3–R6). The population structure determined with 14 SSR markers that best adjusted was K = 2. For a total of 203 markers associated with Sh.E–R1, L.R1–R3, and L.R3–R6, 1221 candidate genes were identified, of which 17 were previously cited and/or containing markers located in their sequence and were selected for future studies. Splitting the reproductive period in two phases allowed the detection of variability through it. It was verified the existence of genotypes with early bloom and/or prolonged reproductive period within germplasm with similar cycle. The genotypes identified, molecular markers, and associated genes can be used in breeding programs to extend the reproductive period in soybean.
EEA Paraná
Fil: Vicentin, Ignacio Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Paraná; Argentina
Fil: Ghione, Celina Elena. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: Cuatrin, Alejandra. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Paraná; Argentina.
Fil: Gilli, Javier Ramon. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: Bernardi, Clarisa Noelia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina
Fil: De Lucia, Adrían Darío. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Cerro Azul; Argentina
Fil: Heinz, Ruth Amelia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina.
description Adaptation to temporal stress can be achieved by modifying flowering time and lengthening the reproductive period. To identify genotypes, molecular markers, and genes related with these traits, a set of 94 soybeans were genotyped using 7125 SNPs and 6465 DArTs. The genotypes were grouped according to their duration cycle (cycle) and were analyzed, days from emergence to beginning bloom (E–R1), days from beginning bloom to beginning pod (R1–R3), and days from beginning pod to full seed (R3–R6), identifying fifty-six genotypes with short E–R1 (Sh.E–R1) and/or prolonged R1–R3 and R3–R6 (L.R1–R3 and L.R3–R6). The population structure determined with 14 SSR markers that best adjusted was K = 2. For a total of 203 markers associated with Sh.E–R1, L.R1–R3, and L.R3–R6, 1221 candidate genes were identified, of which 17 were previously cited and/or containing markers located in their sequence and were selected for future studies. Splitting the reproductive period in two phases allowed the detection of variability through it. It was verified the existence of genotypes with early bloom and/or prolonged reproductive period within germplasm with similar cycle. The genotypes identified, molecular markers, and associated genes can be used in breeding programs to extend the reproductive period in soybean.
publishDate 2023
dc.date.none.fl_str_mv 2023-06-21T10:52:24Z
2023-06-21T10:52:24Z
2023-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/14639
https://link.springer.com/article/10.1007/s11105-022-01361-7
0735-9640
1572-9818
https://doi.org/10.1007/s11105-022-01361-7
url http://hdl.handle.net/20.500.12123/14639
https://link.springer.com/article/10.1007/s11105-022-01361-7
https://doi.org/10.1007/s11105-022-01361-7
identifier_str_mv 0735-9640
1572-9818
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv restrictedAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv Plant Molecular Biology Reporter 41 : 229-241. (2023)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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