Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
- Autores
- Chu, Chia Ching; Zavala, Jorge Alberto; Spencer, Joseph L.; Curzi, Matías Joel; Fields, Christopher J.; Drnevich, Jenny; Siegfried, Blair D.; Seufferheld, Manfredo J.
- Año de publicación
- 2015
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina.
Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
Fil: Zavala, Jorge Alberto. CONICET – Universidad de Buenos Aires. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn-dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation-resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR-WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host-microbe interactions compared to rotation-susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA-sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT- and RR-WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network- based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR- and WT-WCR adults. - Fuente
- Evolutionary Applications
Vol.8, no.7
692-704
http://www.wiley.com/ - Materia
-
ADAPTATION
AGRICULTURE
ECOLOGICAL GENETICS - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- acceso abierto
- Repositorio
- Institución
- Universidad de Buenos Aires. Facultad de Agronomía
- OAI Identificador
- snrd:2015chu
Ver los metadatos del registro completo
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Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tractsChu, Chia ChingZavala, Jorge AlbertoSpencer, Joseph L.Curzi, Matías JoelFields, Christopher J.Drnevich, JennySiegfried, Blair D.Seufferheld, Manfredo J.ADAPTATIONAGRICULTUREECOLOGICAL GENETICSFil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina.Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.Fil: Zavala, Jorge Alberto. CONICET – Universidad de Buenos Aires. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn-dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation-resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR-WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host-microbe interactions compared to rotation-susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA-sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT- and RR-WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network- based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR- and WT-WCR adults.2015info:eu-repo/semantics/articlepublishedVersioninfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfdoi:10.1111/eva.12278issn:1752-4571http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2015chuEvolutionary ApplicationsVol.8, no.7692-704http://www.wiley.com/reponame:FAUBA Digital (UBA-FAUBA)instname:Universidad de Buenos Aires. Facultad de Agronomíaenginfo:eu-repo/semantics/openAccessopenAccesshttp://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section42025-09-29T13:41:42Zsnrd:2015chuinstacron:UBA-FAUBAInstitucionalhttp://ri.agro.uba.ar/Universidad públicaNo correspondehttp://ri.agro.uba.ar/greenstone3/oaiserver?verb=ListSetsmartino@agro.uba.ar;berasa@agro.uba.ar ArgentinaNo correspondeNo correspondeNo correspondeopendoar:27292025-09-29 13:41:43.202FAUBA Digital (UBA-FAUBA) - Universidad de Buenos Aires. Facultad de Agronomíafalse |
dc.title.none.fl_str_mv |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts |
title |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts |
spellingShingle |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts Chu, Chia Ching ADAPTATION AGRICULTURE ECOLOGICAL GENETICS |
title_short |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts |
title_full |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts |
title_fullStr |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts |
title_full_unstemmed |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts |
title_sort |
Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts |
dc.creator.none.fl_str_mv |
Chu, Chia Ching Zavala, Jorge Alberto Spencer, Joseph L. Curzi, Matías Joel Fields, Christopher J. Drnevich, Jenny Siegfried, Blair D. Seufferheld, Manfredo J. |
author |
Chu, Chia Ching |
author_facet |
Chu, Chia Ching Zavala, Jorge Alberto Spencer, Joseph L. Curzi, Matías Joel Fields, Christopher J. Drnevich, Jenny Siegfried, Blair D. Seufferheld, Manfredo J. |
author_role |
author |
author2 |
Zavala, Jorge Alberto Spencer, Joseph L. Curzi, Matías Joel Fields, Christopher J. Drnevich, Jenny Siegfried, Blair D. Seufferheld, Manfredo J. |
author2_role |
author author author author author author author |
dc.subject.none.fl_str_mv |
ADAPTATION AGRICULTURE ECOLOGICAL GENETICS |
topic |
ADAPTATION AGRICULTURE ECOLOGICAL GENETICS |
dc.description.none.fl_txt_mv |
Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina. Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina. Fil: Zavala, Jorge Alberto. CONICET – Universidad de Buenos Aires. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina. The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn-dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation-resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR-WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host-microbe interactions compared to rotation-susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA-sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT- and RR-WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network- based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR- and WT-WCR adults. |
description |
Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article publishedVersion info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
doi:10.1111/eva.12278 issn:1752-4571 http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2015chu |
identifier_str_mv |
doi:10.1111/eva.12278 issn:1752-4571 |
url |
http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2015chu |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess openAccess http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4 |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
openAccess http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4 |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Evolutionary Applications Vol.8, no.7 692-704 http://www.wiley.com/ reponame:FAUBA Digital (UBA-FAUBA) instname:Universidad de Buenos Aires. Facultad de Agronomía |
reponame_str |
FAUBA Digital (UBA-FAUBA) |
collection |
FAUBA Digital (UBA-FAUBA) |
instname_str |
Universidad de Buenos Aires. Facultad de Agronomía |
repository.name.fl_str_mv |
FAUBA Digital (UBA-FAUBA) - Universidad de Buenos Aires. Facultad de Agronomía |
repository.mail.fl_str_mv |
martino@agro.uba.ar;berasa@agro.uba.ar |
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1844618860345425920 |
score |
13.070432 |