Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts

Autores
Chu, Chia Ching; Zavala, Jorge Alberto; Spencer, Joseph L.; Curzi, Matías Joel; Fields, Christopher J.; Drnevich, Jenny; Siegfried, Blair D.; Seufferheld, Manfredo J.
Año de publicación
2015
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina.
Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
Fil: Zavala, Jorge Alberto. CONICET – Universidad de Buenos Aires. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn-dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation-resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR-WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host-microbe interactions compared to rotation-susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA-sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT- and RR-WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network- based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR- and WT-WCR adults.
Fuente
Evolutionary Applications
Vol.8, no.7
692-704
http://www.wiley.com/
Materia
ADAPTATION
AGRICULTURE
ECOLOGICAL GENETICS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
acceso abierto
Repositorio
FAUBA Digital (UBA-FAUBA)
Institución
Universidad de Buenos Aires. Facultad de Agronomía
OAI Identificador
snrd:2015chu

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oai_identifier_str snrd:2015chu
network_acronym_str FAUBA
repository_id_str 2729
network_name_str FAUBA Digital (UBA-FAUBA)
spelling Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tractsChu, Chia ChingZavala, Jorge AlbertoSpencer, Joseph L.Curzi, Matías JoelFields, Christopher J.Drnevich, JennySiegfried, Blair D.Seufferheld, Manfredo J.ADAPTATIONAGRICULTUREECOLOGICAL GENETICSFil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina.Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.Fil: Zavala, Jorge Alberto. CONICET – Universidad de Buenos Aires. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn-dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation-resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR-WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host-microbe interactions compared to rotation-susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA-sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT- and RR-WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network- based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR- and WT-WCR adults.2015info:eu-repo/semantics/articlepublishedVersioninfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfdoi:10.1111/eva.12278issn:1752-4571http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2015chuEvolutionary ApplicationsVol.8, no.7692-704http://www.wiley.com/reponame:FAUBA Digital (UBA-FAUBA)instname:Universidad de Buenos Aires. Facultad de Agronomíaenginfo:eu-repo/semantics/openAccessopenAccesshttp://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section42025-09-29T13:41:42Zsnrd:2015chuinstacron:UBA-FAUBAInstitucionalhttp://ri.agro.uba.ar/Universidad públicaNo correspondehttp://ri.agro.uba.ar/greenstone3/oaiserver?verb=ListSetsmartino@agro.uba.ar;berasa@agro.uba.ar ArgentinaNo correspondeNo correspondeNo correspondeopendoar:27292025-09-29 13:41:43.202FAUBA Digital (UBA-FAUBA) - Universidad de Buenos Aires. Facultad de Agronomíafalse
dc.title.none.fl_str_mv Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
title Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
spellingShingle Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
Chu, Chia Ching
ADAPTATION
AGRICULTURE
ECOLOGICAL GENETICS
title_short Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
title_full Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
title_fullStr Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
title_full_unstemmed Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
title_sort Patterns of differential gene expression in adult rotation - resistant and wild - type western corn rootworm digestive tracts
dc.creator.none.fl_str_mv Chu, Chia Ching
Zavala, Jorge Alberto
Spencer, Joseph L.
Curzi, Matías Joel
Fields, Christopher J.
Drnevich, Jenny
Siegfried, Blair D.
Seufferheld, Manfredo J.
author Chu, Chia Ching
author_facet Chu, Chia Ching
Zavala, Jorge Alberto
Spencer, Joseph L.
Curzi, Matías Joel
Fields, Christopher J.
Drnevich, Jenny
Siegfried, Blair D.
Seufferheld, Manfredo J.
author_role author
author2 Zavala, Jorge Alberto
Spencer, Joseph L.
Curzi, Matías Joel
Fields, Christopher J.
Drnevich, Jenny
Siegfried, Blair D.
Seufferheld, Manfredo J.
author2_role author
author
author
author
author
author
author
dc.subject.none.fl_str_mv ADAPTATION
AGRICULTURE
ECOLOGICAL GENETICS
topic ADAPTATION
AGRICULTURE
ECOLOGICAL GENETICS
dc.description.none.fl_txt_mv Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina.
Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
Fil: Zavala, Jorge Alberto. CONICET – Universidad de Buenos Aires. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn-dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation-resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR-WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host-microbe interactions compared to rotation-susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA-sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT- and RR-WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network- based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR- and WT-WCR adults.
description Fil: Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Biología Aplicada y Alimentos. Cátedra de Bioquímica. Buenos Aires, Argentina.
publishDate 2015
dc.date.none.fl_str_mv 2015
dc.type.none.fl_str_mv info:eu-repo/semantics/article
publishedVersion
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv doi:10.1111/eva.12278
issn:1752-4571
http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2015chu
identifier_str_mv doi:10.1111/eva.12278
issn:1752-4571
url http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2015chu
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
openAccess
http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4
eu_rights_str_mv openAccess
rights_invalid_str_mv openAccess
http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Evolutionary Applications
Vol.8, no.7
692-704
http://www.wiley.com/
reponame:FAUBA Digital (UBA-FAUBA)
instname:Universidad de Buenos Aires. Facultad de Agronomía
reponame_str FAUBA Digital (UBA-FAUBA)
collection FAUBA Digital (UBA-FAUBA)
instname_str Universidad de Buenos Aires. Facultad de Agronomía
repository.name.fl_str_mv FAUBA Digital (UBA-FAUBA) - Universidad de Buenos Aires. Facultad de Agronomía
repository.mail.fl_str_mv martino@agro.uba.ar;berasa@agro.uba.ar
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