Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts
- Autores
- Chu, Chia-Ching; Zavala, Jorge Alberto; Spencer, Joseph L.; Curzi, Matías J.; Fields, Christopher J.; Drnevich, Jenny; Siegfried, Blair D.; Seufferheld, Manfredo Jose
- Año de publicación
- 2015
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn‐dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation‐resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR‐WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host–microbe interactions compared to rotation‐susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA‐sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT‐ and RR‐WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network‐based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR‐ and WT‐WCR adults.
Fil: Chu, Chia-Ching. University of Illinois at Urbana; Estados Unidos
Fil: Zavala, Jorge Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Agronomía; Argentina
Fil: Spencer, Joseph L.. University of Illinois; Estados Unidos
Fil: Curzi, Matías J.. DuPont Pioneer; Argentina
Fil: Fields, Christopher J.. Biotechnology Center; Estados Unidos
Fil: Drnevich, Jenny. Biotechnology Center; Estados Unidos
Fil: Siegfried, Blair D.. Universidad de Nebraska - Lincoln; Estados Unidos
Fil: Seufferheld, Manfredo Jose. University of Illinois at Urbana; Estados Unidos. University of Illinois; Estados Unidos - Materia
-
Adaptation
Agriculture
Molecular Ecology
Plant Defenses - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/46400
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Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tractsChu, Chia-ChingZavala, Jorge AlbertoSpencer, Joseph L.Curzi, Matías J.Fields, Christopher J.Drnevich, JennySiegfried, Blair D.Seufferheld, Manfredo JoseAdaptationAgricultureMolecular EcologyPlant Defenseshttps://purl.org/becyt/ford/4.1https://purl.org/becyt/ford/4The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn‐dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation‐resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR‐WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host–microbe interactions compared to rotation‐susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA‐sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT‐ and RR‐WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network‐based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR‐ and WT‐WCR adults.Fil: Chu, Chia-Ching. University of Illinois at Urbana; Estados UnidosFil: Zavala, Jorge Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Agronomía; ArgentinaFil: Spencer, Joseph L.. University of Illinois; Estados UnidosFil: Curzi, Matías J.. DuPont Pioneer; ArgentinaFil: Fields, Christopher J.. Biotechnology Center; Estados UnidosFil: Drnevich, Jenny. Biotechnology Center; Estados UnidosFil: Siegfried, Blair D.. Universidad de Nebraska - Lincoln; Estados UnidosFil: Seufferheld, Manfredo Jose. University of Illinois at Urbana; Estados Unidos. University of Illinois; Estados UnidosWiley Blackwell Publishing, Inc2015-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/46400Chu, Chia-Ching; Zavala, Jorge Alberto; Spencer, Joseph L.; Curzi, Matías J.; Fields, Christopher J.; et al.; Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts; Wiley Blackwell Publishing, Inc; Evolutionary Applications; 8; 7; 7-2015; 692-7041752-4571CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1111/eva.12278info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/eva.12278info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:37:58Zoai:ri.conicet.gov.ar:11336/46400instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:37:59.002CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts |
title |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts |
spellingShingle |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts Chu, Chia-Ching Adaptation Agriculture Molecular Ecology Plant Defenses |
title_short |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts |
title_full |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts |
title_fullStr |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts |
title_full_unstemmed |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts |
title_sort |
Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts |
dc.creator.none.fl_str_mv |
Chu, Chia-Ching Zavala, Jorge Alberto Spencer, Joseph L. Curzi, Matías J. Fields, Christopher J. Drnevich, Jenny Siegfried, Blair D. Seufferheld, Manfredo Jose |
author |
Chu, Chia-Ching |
author_facet |
Chu, Chia-Ching Zavala, Jorge Alberto Spencer, Joseph L. Curzi, Matías J. Fields, Christopher J. Drnevich, Jenny Siegfried, Blair D. Seufferheld, Manfredo Jose |
author_role |
author |
author2 |
Zavala, Jorge Alberto Spencer, Joseph L. Curzi, Matías J. Fields, Christopher J. Drnevich, Jenny Siegfried, Blair D. Seufferheld, Manfredo Jose |
author2_role |
author author author author author author author |
dc.subject.none.fl_str_mv |
Adaptation Agriculture Molecular Ecology Plant Defenses |
topic |
Adaptation Agriculture Molecular Ecology Plant Defenses |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/4.1 https://purl.org/becyt/ford/4 |
dc.description.none.fl_txt_mv |
The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn‐dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation‐resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR‐WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host–microbe interactions compared to rotation‐susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA‐sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT‐ and RR‐WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network‐based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR‐ and WT‐WCR adults. Fil: Chu, Chia-Ching. University of Illinois at Urbana; Estados Unidos Fil: Zavala, Jorge Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Agronomía; Argentina Fil: Spencer, Joseph L.. University of Illinois; Estados Unidos Fil: Curzi, Matías J.. DuPont Pioneer; Argentina Fil: Fields, Christopher J.. Biotechnology Center; Estados Unidos Fil: Drnevich, Jenny. Biotechnology Center; Estados Unidos Fil: Siegfried, Blair D.. Universidad de Nebraska - Lincoln; Estados Unidos Fil: Seufferheld, Manfredo Jose. University of Illinois at Urbana; Estados Unidos. University of Illinois; Estados Unidos |
description |
The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn‐dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation‐resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR‐WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host–microbe interactions compared to rotation‐susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA‐sequencing analyses of RNA libraries from different WCR phenotypes fed with corn or soybean diets. Global gene expression profiles of WT‐ and RR‐WCR were similar when feeding on corn diets, but different when feeding on soybean. Using network‐based methods, we identified gene modules transcriptionally correlated with the RR phenotype. Gene ontology enrichment analyses indicated that the functions of these modules were related to metabolic processes, immune responses, biological adhesion, and other functions/processes that appear to correlate to documented traits in RR populations. These results suggest that gut transcriptomic divergence correlated with brief soybean feeding and other physiological traits may exist between RR‐ and WT‐WCR adults. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-07 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/46400 Chu, Chia-Ching; Zavala, Jorge Alberto; Spencer, Joseph L.; Curzi, Matías J.; Fields, Christopher J.; et al.; Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts; Wiley Blackwell Publishing, Inc; Evolutionary Applications; 8; 7; 7-2015; 692-704 1752-4571 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/46400 |
identifier_str_mv |
Chu, Chia-Ching; Zavala, Jorge Alberto; Spencer, Joseph L.; Curzi, Matías J.; Fields, Christopher J.; et al.; Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts; Wiley Blackwell Publishing, Inc; Evolutionary Applications; 8; 7; 7-2015; 692-704 1752-4571 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/doi/10.1111/eva.12278 info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/eva.12278 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Wiley Blackwell Publishing, Inc |
publisher.none.fl_str_mv |
Wiley Blackwell Publishing, Inc |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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1844613199194750976 |
score |
13.070432 |