On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory

Autores
Berdakin, Matias; Steinmetz, Vincent; Maitre, Philippe; Pino, Gustavo Ariel
Año de publicación
2015
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The gas-phase structures of cytosine–Ag+ [CAg]+ and cytosine–Ag+–H2O [CAg–H2O]+ complexes have been studied by mass-selected infrared multiphoton dissociation (IRMPD) spectroscopy in the 900–1800 cm−1 spectral region using the Free Electron Laser facility in Orsay (CLIO). The IRMPD experimental spectra have been compared with the calculated IR absorption spectra of the different low-lying isomers (computed at the DFT level using the B3LYP functional and the 6-311G++(d,p) basis set for C, H, N and O atoms and the Stuttgart effective core potential for Ag). For the [CAg]+ complex, only one isomer with cytosine in the keto-amino (KA) tautomeric form and Ag+ interacting simultaneously with the C(2)[double bond, length as m-dash]O(7) group and N(3) of cytosine was observed. However, the mono-hydration of the complex in the gas phase leads to the stabilization of a two quasi-isoenergetic structure of the [CAg–H2O]+ complex, in which Ag+ interacts with the O atom of the water molecule and with the N(3) or C(2)[double bond, length as m-dash]O(7) group of cytosine. The relative populations of the two isomers determined from the IRMPD kinetics plot are in good agreement with the calculated values. Comparison of these results with those of protonated cytosine [CH]+ and its mono-hydrated complex [CH–H2O]+ shows some interesting differences between H+ and Ag+. In particular, while a single water molecule catalyzes the isomerization reaction in the case of [CH–H2O]+, it is found that in the case of [CAg–H2O]+ the addition of water leads to the stabilization of two isomers separated by small energy barrier (0.05 eV).
Fil: Berdakin, Matias. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentina
Fil: Steinmetz, Vincent. Université Paris Sud; Francia
Fil: Maitre, Philippe. Université Paris Sud; Francia
Fil: Pino, Gustavo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentina
Materia
Dna Silver Interaction
Fel Laser
Icr Mass Spectrometry
Irmpd Spectroscopy
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/47461
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/47461
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theoryBerdakin, MatiasSteinmetz, VincentMaitre, PhilippePino, Gustavo ArielDna Silver InteractionFel LaserIcr Mass SpectrometryIrmpd Spectroscopyhttps://purl.org/becyt/ford/1.4https://purl.org/becyt/ford/1The gas-phase structures of cytosine–Ag+ [CAg]+ and cytosine–Ag+–H2O [CAg–H2O]+ complexes have been studied by mass-selected infrared multiphoton dissociation (IRMPD) spectroscopy in the 900–1800 cm−1 spectral region using the Free Electron Laser facility in Orsay (CLIO). The IRMPD experimental spectra have been compared with the calculated IR absorption spectra of the different low-lying isomers (computed at the DFT level using the B3LYP functional and the 6-311G++(d,p) basis set for C, H, N and O atoms and the Stuttgart effective core potential for Ag). For the [CAg]+ complex, only one isomer with cytosine in the keto-amino (KA) tautomeric form and Ag+ interacting simultaneously with the C(2)[double bond, length as m-dash]O(7) group and N(3) of cytosine was observed. However, the mono-hydration of the complex in the gas phase leads to the stabilization of a two quasi-isoenergetic structure of the [CAg–H2O]+ complex, in which Ag+ interacts with the O atom of the water molecule and with the N(3) or C(2)[double bond, length as m-dash]O(7) group of cytosine. The relative populations of the two isomers determined from the IRMPD kinetics plot are in good agreement with the calculated values. Comparison of these results with those of protonated cytosine [CH]+ and its mono-hydrated complex [CH–H2O]+ shows some interesting differences between H+ and Ag+. In particular, while a single water molecule catalyzes the isomerization reaction in the case of [CH–H2O]+, it is found that in the case of [CAg–H2O]+ the addition of water leads to the stabilization of two isomers separated by small energy barrier (0.05 eV).Fil: Berdakin, Matias. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; ArgentinaFil: Steinmetz, Vincent. Université Paris Sud; FranciaFil: Maitre, Philippe. Université Paris Sud; FranciaFil: Pino, Gustavo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; ArgentinaRoyal Society of Chemistry2015-05-29info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/47461Berdakin, Matias; Steinmetz, Vincent; Maitre, Philippe; Pino, Gustavo Ariel; On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory; Royal Society of Chemistry; Physical Chemistry Chemical Physics; 17; 39; 29-5-2015; 25915-259241463-90761463-9084CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://pubs.rsc.org/en/Content/ArticleLanding/2015/CP/C5CP02221E#info:eu-repo/semantics/altIdentifier/doi/10.1039/c5cp02221einfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:27:29Zoai:ri.conicet.gov.ar:11336/47461instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:27:29.249CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
title On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
spellingShingle On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
Berdakin, Matias
Dna Silver Interaction
Fel Laser
Icr Mass Spectrometry
Irmpd Spectroscopy
title_short On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
title_full On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
title_fullStr On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
title_full_unstemmed On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
title_sort On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory
dc.creator.none.fl_str_mv Berdakin, Matias
Steinmetz, Vincent
Maitre, Philippe
Pino, Gustavo Ariel
author Berdakin, Matias
author_facet Berdakin, Matias
Steinmetz, Vincent
Maitre, Philippe
Pino, Gustavo Ariel
author_role author
author2 Steinmetz, Vincent
Maitre, Philippe
Pino, Gustavo Ariel
author2_role author
author
author
dc.subject.none.fl_str_mv Dna Silver Interaction
Fel Laser
Icr Mass Spectrometry
Irmpd Spectroscopy
topic Dna Silver Interaction
Fel Laser
Icr Mass Spectrometry
Irmpd Spectroscopy
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.4
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The gas-phase structures of cytosine–Ag+ [CAg]+ and cytosine–Ag+–H2O [CAg–H2O]+ complexes have been studied by mass-selected infrared multiphoton dissociation (IRMPD) spectroscopy in the 900–1800 cm−1 spectral region using the Free Electron Laser facility in Orsay (CLIO). The IRMPD experimental spectra have been compared with the calculated IR absorption spectra of the different low-lying isomers (computed at the DFT level using the B3LYP functional and the 6-311G++(d,p) basis set for C, H, N and O atoms and the Stuttgart effective core potential for Ag). For the [CAg]+ complex, only one isomer with cytosine in the keto-amino (KA) tautomeric form and Ag+ interacting simultaneously with the C(2)[double bond, length as m-dash]O(7) group and N(3) of cytosine was observed. However, the mono-hydration of the complex in the gas phase leads to the stabilization of a two quasi-isoenergetic structure of the [CAg–H2O]+ complex, in which Ag+ interacts with the O atom of the water molecule and with the N(3) or C(2)[double bond, length as m-dash]O(7) group of cytosine. The relative populations of the two isomers determined from the IRMPD kinetics plot are in good agreement with the calculated values. Comparison of these results with those of protonated cytosine [CH]+ and its mono-hydrated complex [CH–H2O]+ shows some interesting differences between H+ and Ag+. In particular, while a single water molecule catalyzes the isomerization reaction in the case of [CH–H2O]+, it is found that in the case of [CAg–H2O]+ the addition of water leads to the stabilization of two isomers separated by small energy barrier (0.05 eV).
Fil: Berdakin, Matias. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentina
Fil: Steinmetz, Vincent. Université Paris Sud; Francia
Fil: Maitre, Philippe. Université Paris Sud; Francia
Fil: Pino, Gustavo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentina
description The gas-phase structures of cytosine–Ag+ [CAg]+ and cytosine–Ag+–H2O [CAg–H2O]+ complexes have been studied by mass-selected infrared multiphoton dissociation (IRMPD) spectroscopy in the 900–1800 cm−1 spectral region using the Free Electron Laser facility in Orsay (CLIO). The IRMPD experimental spectra have been compared with the calculated IR absorption spectra of the different low-lying isomers (computed at the DFT level using the B3LYP functional and the 6-311G++(d,p) basis set for C, H, N and O atoms and the Stuttgart effective core potential for Ag). For the [CAg]+ complex, only one isomer with cytosine in the keto-amino (KA) tautomeric form and Ag+ interacting simultaneously with the C(2)[double bond, length as m-dash]O(7) group and N(3) of cytosine was observed. However, the mono-hydration of the complex in the gas phase leads to the stabilization of a two quasi-isoenergetic structure of the [CAg–H2O]+ complex, in which Ag+ interacts with the O atom of the water molecule and with the N(3) or C(2)[double bond, length as m-dash]O(7) group of cytosine. The relative populations of the two isomers determined from the IRMPD kinetics plot are in good agreement with the calculated values. Comparison of these results with those of protonated cytosine [CH]+ and its mono-hydrated complex [CH–H2O]+ shows some interesting differences between H+ and Ag+. In particular, while a single water molecule catalyzes the isomerization reaction in the case of [CH–H2O]+, it is found that in the case of [CAg–H2O]+ the addition of water leads to the stabilization of two isomers separated by small energy barrier (0.05 eV).
publishDate 2015
dc.date.none.fl_str_mv 2015-05-29
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/47461
Berdakin, Matias; Steinmetz, Vincent; Maitre, Philippe; Pino, Gustavo Ariel; On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory; Royal Society of Chemistry; Physical Chemistry Chemical Physics; 17; 39; 29-5-2015; 25915-25924
1463-9076
1463-9084
CONICET Digital
CONICET
url http://hdl.handle.net/11336/47461
identifier_str_mv Berdakin, Matias; Steinmetz, Vincent; Maitre, Philippe; Pino, Gustavo Ariel; On the Ag+-Cytosine interaction: effect of microhydration probed by IR optical spectroscopy and density functional theory; Royal Society of Chemistry; Physical Chemistry Chemical Physics; 17; 39; 29-5-2015; 25915-25924
1463-9076
1463-9084
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/http://pubs.rsc.org/en/Content/ArticleLanding/2015/CP/C5CP02221E#
info:eu-repo/semantics/altIdentifier/doi/10.1039/c5cp02221e
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Royal Society of Chemistry
publisher.none.fl_str_mv Royal Society of Chemistry
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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