Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data
- Autores
- Xue, Zhiqing; Chiapella, Jorge Oscar; Paun, Ovidiu; Volkova, Polina; Peintinger, Markus; Wasowicz, Pawel; Tikhomirov, Nikita; Grigoryan, Maksim; Barfuss, Michael H. J.; Greimler, Josef
- Año de publicación
- 2023
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- The highly variable tufted hairgrass Deschampsia cespitosa is a tussock-forming plant especially of cool and humid environments. Although common and widespread, its phylogeographic structure and the significance of polyploidy for its evolution are poorly understood. Here we used a phylogenomic approach to study the genetic structure of this species in Europe and how the polyploid cytotypes/subspecies are related to the diploids. Using genomic data (RADseq and wholeplastid sequencing) we found a highly divergent Iberian group, including the Spanish Deschampsia cespitosa subsp. cespitosa (diploid and tetraploid) and the Macaronesian island endemic diploid Deschampsia argentea. Moreover, we found substantial divergence of pseudoviviparous tetraploids (Deschampsia cespitosa subspp. neoalpina and rhenana) from seminiferous tetraploids (except Deschampsia cespitosa subsp. littoralis) and all diploids of the remainingEuropean samples. The divergent pseudoviviparous tetraploids (D. cespitosa subspp. neoalpina and rhenana) and the seminiferous tetraploid D. cespitosa subsp. littoralis probably represent periglacial and relict lineages of unknown origin regarding auto- and/or allo-polyploidy, whereas other seminiferous tetraploid variants of D. cespitosa are always nested in the diploid D. cespitosa, suggesting multiple autopolyploid origins. An analysis after excluding the IberianGroup and the highly divergent tetraploids revealed five genetic groups with overlapping geographical patterns. However, the recovered geographical structure, the overall low genetic divergence and the diffuse genetic structure point to recolonization from various refugial areas and secondary contact. Effective wind dispersal of pollen and seeds in an open early post-glacial tundra landscape and, finally, increasing human impact on dispersal of this grass since theNeolithic, may have enhanced admixture and resulted in the complex patterns detected today.
Fil: Xue, Zhiqing. Universidad de Viena. Instituto de Botanica; Austria
Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina
Fil: Paun, Ovidiu. Universidad de Viena. Instituto de Botanica; Austria
Fil: Volkova, Polina. Russian Academy of Sciences; Rusia
Fil: Peintinger, Markus. Wsl Swiss Federal Research Institute; Suiza
Fil: Wasowicz, Pawel. Icelandic Institute Of Natural History; Islandia
Fil: Tikhomirov, Nikita. Russian Academy of Sciences; Rusia
Fil: Grigoryan, Maksim. Komarov Inst. Of Botany, Russian Academy Of Sciences; Rusia
Fil: Barfuss, Michael H. J.. Universidad de Viena. Instituto de Botanica; Austria
Fil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; Austria - Materia
-
ALLOPOLYPLOIDY
AUTOPOLYPLOIDY
DIPLOIDS
GENOMIC STRUCTURE - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/233711
Ver los metadatos del registro completo
id |
CONICETDig_f3fdc9750ed44d4f9704c75987c407ff |
---|---|
oai_identifier_str |
oai:ri.conicet.gov.ar:11336/233711 |
network_acronym_str |
CONICETDig |
repository_id_str |
3498 |
network_name_str |
CONICET Digital (CONICET) |
spelling |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic dataXue, ZhiqingChiapella, Jorge OscarPaun, OvidiuVolkova, PolinaPeintinger, MarkusWasowicz, PawelTikhomirov, NikitaGrigoryan, MaksimBarfuss, Michael H. J.Greimler, JosefALLOPOLYPLOIDYAUTOPOLYPLOIDYDIPLOIDSGENOMIC STRUCTUREhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The highly variable tufted hairgrass Deschampsia cespitosa is a tussock-forming plant especially of cool and humid environments. Although common and widespread, its phylogeographic structure and the significance of polyploidy for its evolution are poorly understood. Here we used a phylogenomic approach to study the genetic structure of this species in Europe and how the polyploid cytotypes/subspecies are related to the diploids. Using genomic data (RADseq and wholeplastid sequencing) we found a highly divergent Iberian group, including the Spanish Deschampsia cespitosa subsp. cespitosa (diploid and tetraploid) and the Macaronesian island endemic diploid Deschampsia argentea. Moreover, we found substantial divergence of pseudoviviparous tetraploids (Deschampsia cespitosa subspp. neoalpina and rhenana) from seminiferous tetraploids (except Deschampsia cespitosa subsp. littoralis) and all diploids of the remainingEuropean samples. The divergent pseudoviviparous tetraploids (D. cespitosa subspp. neoalpina and rhenana) and the seminiferous tetraploid D. cespitosa subsp. littoralis probably represent periglacial and relict lineages of unknown origin regarding auto- and/or allo-polyploidy, whereas other seminiferous tetraploid variants of D. cespitosa are always nested in the diploid D. cespitosa, suggesting multiple autopolyploid origins. An analysis after excluding the IberianGroup and the highly divergent tetraploids revealed five genetic groups with overlapping geographical patterns. However, the recovered geographical structure, the overall low genetic divergence and the diffuse genetic structure point to recolonization from various refugial areas and secondary contact. Effective wind dispersal of pollen and seeds in an open early post-glacial tundra landscape and, finally, increasing human impact on dispersal of this grass since theNeolithic, may have enhanced admixture and resulted in the complex patterns detected today.Fil: Xue, Zhiqing. Universidad de Viena. Instituto de Botanica; AustriaFil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Paun, Ovidiu. Universidad de Viena. Instituto de Botanica; AustriaFil: Volkova, Polina. Russian Academy of Sciences; RusiaFil: Peintinger, Markus. Wsl Swiss Federal Research Institute; SuizaFil: Wasowicz, Pawel. Icelandic Institute Of Natural History; IslandiaFil: Tikhomirov, Nikita. Russian Academy of Sciences; RusiaFil: Grigoryan, Maksim. Komarov Inst. Of Botany, Russian Academy Of Sciences; RusiaFil: Barfuss, Michael H. J.. Universidad de Viena. Instituto de Botanica; AustriaFil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; AustriaWiley Blackwell Publishing, Inc2023-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/233711Xue, Zhiqing; Chiapella, Jorge Oscar; Paun, Ovidiu; Volkova, Polina; Peintinger, Markus; et al.; Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data; Wiley Blackwell Publishing, Inc; Botanical Journal of The Linnean Society; 201; 3; 3-2023; 341-3600024-4074CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/botlinnean/article/201/3/341/6998521info:eu-repo/semantics/altIdentifier/doi/10.1093/botlinnean/boac067info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:33:43Zoai:ri.conicet.gov.ar:11336/233711instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:33:44.171CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data |
title |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data |
spellingShingle |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data Xue, Zhiqing ALLOPOLYPLOIDY AUTOPOLYPLOIDY DIPLOIDS GENOMIC STRUCTURE |
title_short |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data |
title_full |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data |
title_fullStr |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data |
title_full_unstemmed |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data |
title_sort |
Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data |
dc.creator.none.fl_str_mv |
Xue, Zhiqing Chiapella, Jorge Oscar Paun, Ovidiu Volkova, Polina Peintinger, Markus Wasowicz, Pawel Tikhomirov, Nikita Grigoryan, Maksim Barfuss, Michael H. J. Greimler, Josef |
author |
Xue, Zhiqing |
author_facet |
Xue, Zhiqing Chiapella, Jorge Oscar Paun, Ovidiu Volkova, Polina Peintinger, Markus Wasowicz, Pawel Tikhomirov, Nikita Grigoryan, Maksim Barfuss, Michael H. J. Greimler, Josef |
author_role |
author |
author2 |
Chiapella, Jorge Oscar Paun, Ovidiu Volkova, Polina Peintinger, Markus Wasowicz, Pawel Tikhomirov, Nikita Grigoryan, Maksim Barfuss, Michael H. J. Greimler, Josef |
author2_role |
author author author author author author author author author |
dc.subject.none.fl_str_mv |
ALLOPOLYPLOIDY AUTOPOLYPLOIDY DIPLOIDS GENOMIC STRUCTURE |
topic |
ALLOPOLYPLOIDY AUTOPOLYPLOIDY DIPLOIDS GENOMIC STRUCTURE |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
The highly variable tufted hairgrass Deschampsia cespitosa is a tussock-forming plant especially of cool and humid environments. Although common and widespread, its phylogeographic structure and the significance of polyploidy for its evolution are poorly understood. Here we used a phylogenomic approach to study the genetic structure of this species in Europe and how the polyploid cytotypes/subspecies are related to the diploids. Using genomic data (RADseq and wholeplastid sequencing) we found a highly divergent Iberian group, including the Spanish Deschampsia cespitosa subsp. cespitosa (diploid and tetraploid) and the Macaronesian island endemic diploid Deschampsia argentea. Moreover, we found substantial divergence of pseudoviviparous tetraploids (Deschampsia cespitosa subspp. neoalpina and rhenana) from seminiferous tetraploids (except Deschampsia cespitosa subsp. littoralis) and all diploids of the remainingEuropean samples. The divergent pseudoviviparous tetraploids (D. cespitosa subspp. neoalpina and rhenana) and the seminiferous tetraploid D. cespitosa subsp. littoralis probably represent periglacial and relict lineages of unknown origin regarding auto- and/or allo-polyploidy, whereas other seminiferous tetraploid variants of D. cespitosa are always nested in the diploid D. cespitosa, suggesting multiple autopolyploid origins. An analysis after excluding the IberianGroup and the highly divergent tetraploids revealed five genetic groups with overlapping geographical patterns. However, the recovered geographical structure, the overall low genetic divergence and the diffuse genetic structure point to recolonization from various refugial areas and secondary contact. Effective wind dispersal of pollen and seeds in an open early post-glacial tundra landscape and, finally, increasing human impact on dispersal of this grass since theNeolithic, may have enhanced admixture and resulted in the complex patterns detected today. Fil: Xue, Zhiqing. Universidad de Viena. Instituto de Botanica; Austria Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina Fil: Paun, Ovidiu. Universidad de Viena. Instituto de Botanica; Austria Fil: Volkova, Polina. Russian Academy of Sciences; Rusia Fil: Peintinger, Markus. Wsl Swiss Federal Research Institute; Suiza Fil: Wasowicz, Pawel. Icelandic Institute Of Natural History; Islandia Fil: Tikhomirov, Nikita. Russian Academy of Sciences; Rusia Fil: Grigoryan, Maksim. Komarov Inst. Of Botany, Russian Academy Of Sciences; Rusia Fil: Barfuss, Michael H. J.. Universidad de Viena. Instituto de Botanica; Austria Fil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; Austria |
description |
The highly variable tufted hairgrass Deschampsia cespitosa is a tussock-forming plant especially of cool and humid environments. Although common and widespread, its phylogeographic structure and the significance of polyploidy for its evolution are poorly understood. Here we used a phylogenomic approach to study the genetic structure of this species in Europe and how the polyploid cytotypes/subspecies are related to the diploids. Using genomic data (RADseq and wholeplastid sequencing) we found a highly divergent Iberian group, including the Spanish Deschampsia cespitosa subsp. cespitosa (diploid and tetraploid) and the Macaronesian island endemic diploid Deschampsia argentea. Moreover, we found substantial divergence of pseudoviviparous tetraploids (Deschampsia cespitosa subspp. neoalpina and rhenana) from seminiferous tetraploids (except Deschampsia cespitosa subsp. littoralis) and all diploids of the remainingEuropean samples. The divergent pseudoviviparous tetraploids (D. cespitosa subspp. neoalpina and rhenana) and the seminiferous tetraploid D. cespitosa subsp. littoralis probably represent periglacial and relict lineages of unknown origin regarding auto- and/or allo-polyploidy, whereas other seminiferous tetraploid variants of D. cespitosa are always nested in the diploid D. cespitosa, suggesting multiple autopolyploid origins. An analysis after excluding the IberianGroup and the highly divergent tetraploids revealed five genetic groups with overlapping geographical patterns. However, the recovered geographical structure, the overall low genetic divergence and the diffuse genetic structure point to recolonization from various refugial areas and secondary contact. Effective wind dispersal of pollen and seeds in an open early post-glacial tundra landscape and, finally, increasing human impact on dispersal of this grass since theNeolithic, may have enhanced admixture and resulted in the complex patterns detected today. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-03 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/233711 Xue, Zhiqing; Chiapella, Jorge Oscar; Paun, Ovidiu; Volkova, Polina; Peintinger, Markus; et al.; Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data; Wiley Blackwell Publishing, Inc; Botanical Journal of The Linnean Society; 201; 3; 3-2023; 341-360 0024-4074 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/233711 |
identifier_str_mv |
Xue, Zhiqing; Chiapella, Jorge Oscar; Paun, Ovidiu; Volkova, Polina; Peintinger, Markus; et al.; Phylogeographic patterns of Deschampsia cespitosa (Poaceae) in Europe inferred from genomic data; Wiley Blackwell Publishing, Inc; Botanical Journal of The Linnean Society; 201; 3; 3-2023; 341-360 0024-4074 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/botlinnean/article/201/3/341/6998521 info:eu-repo/semantics/altIdentifier/doi/10.1093/botlinnean/boac067 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Wiley Blackwell Publishing, Inc |
publisher.none.fl_str_mv |
Wiley Blackwell Publishing, Inc |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
_version_ |
1844613038611628032 |
score |
13.070432 |