The plastid genome of Deschampsia cespitosa (Poaceae)

Autores
Chiapella, Jorge Oscar; Barfuss, Michael; Xue, Zhi-Qing; Greimler, Josef
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes,including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica.
Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina
Fil: Barfuss, Michael. Universidad de Viena. Instituto de Botanica; Austria
Fil: Xue, Zhi-Qing. Universidad de Viena. Instituto de Botanica; Austria
Fil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; Austria
Materia
DESCHAMPSIA CESPITOSA
DESCHAMPSIA ANTARCTICA
CHLOROPLAST GENOME COMPARISON
HIGH-THROUGHPUT SEQUENCING
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/109288
Acceder
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network_name_str CONICET Digital (CONICET)
spelling The plastid genome of Deschampsia cespitosa (Poaceae)Chiapella, Jorge OscarBarfuss, MichaelXue, Zhi-QingGreimler, JosefDESCHAMPSIA CESPITOSADESCHAMPSIA ANTARCTICACHLOROPLAST GENOME COMPARISONHIGH-THROUGHPUT SEQUENCINGhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes,including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica.Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; ArgentinaFil: Barfuss, Michael. Universidad de Viena. Instituto de Botanica; AustriaFil: Xue, Zhi-Qing. Universidad de Viena. Instituto de Botanica; AustriaFil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; AustriaMolecular Diversity Preservation International2019-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/109288Chiapella, Jorge Oscar; Barfuss, Michael; Xue, Zhi-Qing; Greimler, Josef; The plastid genome of Deschampsia cespitosa (Poaceae); Molecular Diversity Preservation International; Molecules; 24; 2; 1-20191420-30491420-3049CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/1420-3049/24/2/216info:eu-repo/semantics/altIdentifier/doi/10.3390/molecules24020216info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:54:15Zoai:ri.conicet.gov.ar:11336/109288instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:54:16.145CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv The plastid genome of Deschampsia cespitosa (Poaceae)
title The plastid genome of Deschampsia cespitosa (Poaceae)
spellingShingle The plastid genome of Deschampsia cespitosa (Poaceae)
Chiapella, Jorge Oscar
DESCHAMPSIA CESPITOSA
DESCHAMPSIA ANTARCTICA
CHLOROPLAST GENOME COMPARISON
HIGH-THROUGHPUT SEQUENCING
title_short The plastid genome of Deschampsia cespitosa (Poaceae)
title_full The plastid genome of Deschampsia cespitosa (Poaceae)
title_fullStr The plastid genome of Deschampsia cespitosa (Poaceae)
title_full_unstemmed The plastid genome of Deschampsia cespitosa (Poaceae)
title_sort The plastid genome of Deschampsia cespitosa (Poaceae)
dc.creator.none.fl_str_mv Chiapella, Jorge Oscar
Barfuss, Michael
Xue, Zhi-Qing
Greimler, Josef
author Chiapella, Jorge Oscar
author_facet Chiapella, Jorge Oscar
Barfuss, Michael
Xue, Zhi-Qing
Greimler, Josef
author_role author
author2 Barfuss, Michael
Xue, Zhi-Qing
Greimler, Josef
author2_role author
author
author
dc.subject.none.fl_str_mv DESCHAMPSIA CESPITOSA
DESCHAMPSIA ANTARCTICA
CHLOROPLAST GENOME COMPARISON
HIGH-THROUGHPUT SEQUENCING
topic DESCHAMPSIA CESPITOSA
DESCHAMPSIA ANTARCTICA
CHLOROPLAST GENOME COMPARISON
HIGH-THROUGHPUT SEQUENCING
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes,including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica.
Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina
Fil: Barfuss, Michael. Universidad de Viena. Instituto de Botanica; Austria
Fil: Xue, Zhi-Qing. Universidad de Viena. Instituto de Botanica; Austria
Fil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; Austria
description Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes,including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica.
publishDate 2019
dc.date.none.fl_str_mv 2019-01
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/109288
Chiapella, Jorge Oscar; Barfuss, Michael; Xue, Zhi-Qing; Greimler, Josef; The plastid genome of Deschampsia cespitosa (Poaceae); Molecular Diversity Preservation International; Molecules; 24; 2; 1-2019
1420-3049
1420-3049
CONICET Digital
CONICET
url http://hdl.handle.net/11336/109288
identifier_str_mv Chiapella, Jorge Oscar; Barfuss, Michael; Xue, Zhi-Qing; Greimler, Josef; The plastid genome of Deschampsia cespitosa (Poaceae); Molecular Diversity Preservation International; Molecules; 24; 2; 1-2019
1420-3049
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/1420-3049/24/2/216
info:eu-repo/semantics/altIdentifier/doi/10.3390/molecules24020216
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Molecular Diversity Preservation International
publisher.none.fl_str_mv Molecular Diversity Preservation International
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.13397

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