Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing

Autores
Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; Heintzmann, Rainer; Verstreken, Patrik; Annaert, Wim
Año de publicación
2012
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems.
Fil: Munck, Sebastian. No especifíca;
Fil: Miskiewicz, Katarzyna. No especifíca;
Fil: Sannerud, Ragna. No especifíca;
Fil: Menchón, Silvia Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Física Enrique Gaviola. Universidad Nacional de Córdoba. Instituto de Física Enrique Gaviola; Argentina
Fil: Jose, Liya. No especifíca;
Fil: Heintzmann, Rainer. Kings College London (kcl);
Fil: Verstreken, Patrik. No especifíca;
Fil: Annaert, Wim. No especifíca;
Materia
BLEACHING
SUPER RESOLUTION-MICROSCOPY
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/269468

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network_name_str CONICET Digital (CONICET)
spelling Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear ProcessingMunck, SebastianMiskiewicz, KatarzynaSannerud, RagnaMenchón, Silvia AdrianaJose, LiyaHeintzmann, RainerVerstreken, PatrikAnnaert, WimBLEACHINGSUPER RESOLUTION-MICROSCOPYhttps://purl.org/becyt/ford/1.3https://purl.org/becyt/ford/1Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems.Fil: Munck, Sebastian. No especifíca;Fil: Miskiewicz, Katarzyna. No especifíca;Fil: Sannerud, Ragna. No especifíca;Fil: Menchón, Silvia Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Física Enrique Gaviola. Universidad Nacional de Córdoba. Instituto de Física Enrique Gaviola; ArgentinaFil: Jose, Liya. No especifíca;Fil: Heintzmann, Rainer. Kings College London (kcl);Fil: Verstreken, Patrik. No especifíca;Fil: Annaert, Wim. No especifíca;Company of Biologists2012-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/269468Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; et al.; Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing; Company of Biologists; Journal of Cell Science; 125; 1-2012; 2257-22660021-9533CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://jcs.biologists.org/content/125/9/2257.full?sid=1bc3bab4-17fc-4302-9c25-ae34127ddf0ainfo:eu-repo/semantics/altIdentifier/doi/10.1242/jcs.098939info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T13:03:41Zoai:ri.conicet.gov.ar:11336/269468instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 13:03:41.344CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
title Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
spellingShingle Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
Munck, Sebastian
BLEACHING
SUPER RESOLUTION-MICROSCOPY
title_short Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
title_full Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
title_fullStr Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
title_full_unstemmed Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
title_sort Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
dc.creator.none.fl_str_mv Munck, Sebastian
Miskiewicz, Katarzyna
Sannerud, Ragna
Menchón, Silvia Adriana
Jose, Liya
Heintzmann, Rainer
Verstreken, Patrik
Annaert, Wim
author Munck, Sebastian
author_facet Munck, Sebastian
Miskiewicz, Katarzyna
Sannerud, Ragna
Menchón, Silvia Adriana
Jose, Liya
Heintzmann, Rainer
Verstreken, Patrik
Annaert, Wim
author_role author
author2 Miskiewicz, Katarzyna
Sannerud, Ragna
Menchón, Silvia Adriana
Jose, Liya
Heintzmann, Rainer
Verstreken, Patrik
Annaert, Wim
author2_role author
author
author
author
author
author
author
dc.subject.none.fl_str_mv BLEACHING
SUPER RESOLUTION-MICROSCOPY
topic BLEACHING
SUPER RESOLUTION-MICROSCOPY
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.3
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems.
Fil: Munck, Sebastian. No especifíca;
Fil: Miskiewicz, Katarzyna. No especifíca;
Fil: Sannerud, Ragna. No especifíca;
Fil: Menchón, Silvia Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Física Enrique Gaviola. Universidad Nacional de Córdoba. Instituto de Física Enrique Gaviola; Argentina
Fil: Jose, Liya. No especifíca;
Fil: Heintzmann, Rainer. Kings College London (kcl);
Fil: Verstreken, Patrik. No especifíca;
Fil: Annaert, Wim. No especifíca;
description Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems.
publishDate 2012
dc.date.none.fl_str_mv 2012-01
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/269468
Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; et al.; Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing; Company of Biologists; Journal of Cell Science; 125; 1-2012; 2257-2266
0021-9533
CONICET Digital
CONICET
url http://hdl.handle.net/11336/269468
identifier_str_mv Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; et al.; Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing; Company of Biologists; Journal of Cell Science; 125; 1-2012; 2257-2266
0021-9533
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/http://jcs.biologists.org/content/125/9/2257.full?sid=1bc3bab4-17fc-4302-9c25-ae34127ddf0a
info:eu-repo/semantics/altIdentifier/doi/10.1242/jcs.098939
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Company of Biologists
publisher.none.fl_str_mv Company of Biologists
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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