Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing
- Autores
- Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; Heintzmann, Rainer; Verstreken, Patrik; Annaert, Wim
- Año de publicación
- 2012
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems.
Fil: Munck, Sebastian. No especifíca;
Fil: Miskiewicz, Katarzyna. No especifíca;
Fil: Sannerud, Ragna. No especifíca;
Fil: Menchón, Silvia Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Física Enrique Gaviola. Universidad Nacional de Córdoba. Instituto de Física Enrique Gaviola; Argentina
Fil: Jose, Liya. No especifíca;
Fil: Heintzmann, Rainer. Kings College London (kcl);
Fil: Verstreken, Patrik. No especifíca;
Fil: Annaert, Wim. No especifíca; - Materia
-
BLEACHING
SUPER RESOLUTION-MICROSCOPY - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/269468
Ver los metadatos del registro completo
id |
CONICETDig_df3ca7cc6ba4a9c8f989ca139d1134d0 |
---|---|
oai_identifier_str |
oai:ri.conicet.gov.ar:11336/269468 |
network_acronym_str |
CONICETDig |
repository_id_str |
3498 |
network_name_str |
CONICET Digital (CONICET) |
spelling |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear ProcessingMunck, SebastianMiskiewicz, KatarzynaSannerud, RagnaMenchón, Silvia AdrianaJose, LiyaHeintzmann, RainerVerstreken, PatrikAnnaert, WimBLEACHINGSUPER RESOLUTION-MICROSCOPYhttps://purl.org/becyt/ford/1.3https://purl.org/becyt/ford/1Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems.Fil: Munck, Sebastian. No especifíca;Fil: Miskiewicz, Katarzyna. No especifíca;Fil: Sannerud, Ragna. No especifíca;Fil: Menchón, Silvia Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Física Enrique Gaviola. Universidad Nacional de Córdoba. Instituto de Física Enrique Gaviola; ArgentinaFil: Jose, Liya. No especifíca;Fil: Heintzmann, Rainer. Kings College London (kcl);Fil: Verstreken, Patrik. No especifíca;Fil: Annaert, Wim. No especifíca;Company of Biologists2012-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/269468Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; et al.; Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing; Company of Biologists; Journal of Cell Science; 125; 1-2012; 2257-22660021-9533CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://jcs.biologists.org/content/125/9/2257.full?sid=1bc3bab4-17fc-4302-9c25-ae34127ddf0ainfo:eu-repo/semantics/altIdentifier/doi/10.1242/jcs.098939info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T13:03:41Zoai:ri.conicet.gov.ar:11336/269468instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 13:03:41.344CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing |
title |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing |
spellingShingle |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing Munck, Sebastian BLEACHING SUPER RESOLUTION-MICROSCOPY |
title_short |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing |
title_full |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing |
title_fullStr |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing |
title_full_unstemmed |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing |
title_sort |
Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing |
dc.creator.none.fl_str_mv |
Munck, Sebastian Miskiewicz, Katarzyna Sannerud, Ragna Menchón, Silvia Adriana Jose, Liya Heintzmann, Rainer Verstreken, Patrik Annaert, Wim |
author |
Munck, Sebastian |
author_facet |
Munck, Sebastian Miskiewicz, Katarzyna Sannerud, Ragna Menchón, Silvia Adriana Jose, Liya Heintzmann, Rainer Verstreken, Patrik Annaert, Wim |
author_role |
author |
author2 |
Miskiewicz, Katarzyna Sannerud, Ragna Menchón, Silvia Adriana Jose, Liya Heintzmann, Rainer Verstreken, Patrik Annaert, Wim |
author2_role |
author author author author author author author |
dc.subject.none.fl_str_mv |
BLEACHING SUPER RESOLUTION-MICROSCOPY |
topic |
BLEACHING SUPER RESOLUTION-MICROSCOPY |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.3 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems. Fil: Munck, Sebastian. No especifíca; Fil: Miskiewicz, Katarzyna. No especifíca; Fil: Sannerud, Ragna. No especifíca; Fil: Menchón, Silvia Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Física Enrique Gaviola. Universidad Nacional de Córdoba. Instituto de Física Enrique Gaviola; Argentina Fil: Jose, Liya. No especifíca; Fil: Heintzmann, Rainer. Kings College London (kcl); Fil: Verstreken, Patrik. No especifíca; Fil: Annaert, Wim. No especifíca; |
description |
Discerning organelles and molecules at nanometer resolution is revolutionizing biological sciences. However, such technology is still limitedly available for many cell biologists. We present here a novel approach using Photobleaching Microscopy with non-linear Processing (PiMP) for sub-diffraction imaging. Bleaching fluorophores both within the single molecule regime and beyond allows visualizing stochastic representations of sub-populations of fluorophores by imaging the same region over time. Our method is based on extracting approximated positional information from these sub-populations. The random nature of the bleached fluorophores is assessed by calculating the deviation of the local actual bleached fluorescent intensity to the average bleach expectation as determined from the overall decay of intensity. Subtracting measured from estimated decay images yields differential images. Non-linear enhancement of maxima in these diffraction limited differential images approximates the positions of the underlying structure. Summing many such processed differential images yields a super-resolution PIMP image. PIMP allows multi-color, three-dimensional sub-diffraction imaging of cells and tissues using common fluorophores and can be implemented on widefield or confocal systems. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-01 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/269468 Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; et al.; Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing; Company of Biologists; Journal of Cell Science; 125; 1-2012; 2257-2266 0021-9533 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/269468 |
identifier_str_mv |
Munck, Sebastian; Miskiewicz, Katarzyna; Sannerud, Ragna; Menchón, Silvia Adriana; Jose, Liya; et al.; Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing; Company of Biologists; Journal of Cell Science; 125; 1-2012; 2257-2266 0021-9533 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/http://jcs.biologists.org/content/125/9/2257.full?sid=1bc3bab4-17fc-4302-9c25-ae34127ddf0a info:eu-repo/semantics/altIdentifier/doi/10.1242/jcs.098939 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Company of Biologists |
publisher.none.fl_str_mv |
Company of Biologists |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
_version_ |
1842980100345167872 |
score |
12.993085 |