Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
- Autores
- Nunes Nesi, Adriano; Alseekh, Saleh; de Oliveira Silva, Franklin Magnum; Omranian, Nooshin; Lichtenstein, Gabriel; Mirnezhad, Mohammad; Romero González, Roman R.; Sabio y Garcia, Julia Veronica; Conte, Mariana; Leiss, Kirsten A.; Klinkhamer, Peter G. L.; Nikoloski, Zoran; Carrari, Fernando Oscar; Fernie, Alisdair R.
- Año de publicación
- 2019
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Introduction: To date, most studies of natural variation and metabolite quantitative trait loci (mQTL) in tomato have focused on fruit metabolism, leaving aside the identification of genomic regions involved in the regulation of leaf metabolism. Objective: This study was conducted to identify leaf mQTL in tomato and to assess the association of leaf metabolites and physiological traits with the metabolite levels from other tissues. Methods: The analysis of components of leaf metabolism was performed by phenotypying 76 tomato ILs with chromosome segments of the wild species Solanum pennellii in the genetic background of a cultivated tomato (S. lycopersicum) variety M82. The plants were cultivated in two different environments in independent years and samples were harvested from mature leaves of non-flowering plants at the middle of the light period. The non-targeted metabolite profiling was obtained by gas chromatography time-of-flight mass spectrometry (GC-TOF-MS). With the data set obtained in this study and already published metabolomics data from seed and fruit, we performed QTL mapping, heritability and correlation analyses. Results: Changes in metabolite contents were evident in the ILs that are potentially important with respect to stress responses and plant physiology. By analyzing the obtained data, we identified 42 positive and 76 negative mQTL involved in carbon and nitrogen metabolism. Conclusions: Overall, these findings allowed the identification of S. lycopersicum genome regions involved in the regulation of leaf primary carbon and nitrogen metabolism, as well as the association of leaf metabolites with metabolites from seeds and fruits.
Fil: Nunes Nesi, Adriano. Max Planck Institute Of Molecular Plant Physiology; Alemania. Universidade Federal de Viçosa.; Brasil
Fil: Alseekh, Saleh. Center Of Plant Systems Biology And Biotechnology; Bulgaria. Max Planck Institute Of Molecular Plant Physiology; Alemania
Fil: de Oliveira Silva, Franklin Magnum. Universidade Federal de Viçosa.; Brasil
Fil: Omranian, Nooshin. Max Planck Institute Of Molecular Plant Physiology; Alemania. Center Of Plant Systems Biology And Biotechnology; Bulgaria
Fil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Investigaciones en Microbiología y Parasitología Médica. Universidad de Buenos Aires. Facultad de Medicina. Instituto de Investigaciones en Microbiología y Parasitología Médica; Argentina
Fil: Mirnezhad, Mohammad. Leiden University; Países Bajos
Fil: Romero González, Roman R.. Leiden University; Países Bajos
Fil: Sabio y Garcia, Julia Veronica. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina
Fil: Leiss, Kirsten A.. Leiden University; Países Bajos
Fil: Klinkhamer, Peter G. L.. Leiden University; Países Bajos
Fil: Nikoloski, Zoran. University of Potsdam; Alemania. Max Planck Institute of Molecular Plant Physiology; Alemania
Fil: Carrari, Fernando Oscar. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina
Fil: Fernie, Alisdair R.. Max Planck Institute of Molecular Plant Physiology; Alemania. Center of Plant System Biology and Biotechnology; Bulgaria - Materia
-
LEAF METABOLISM
METABOLITE NETWORK
METABOLITE QTL
TOMATO - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/133396
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oai:ri.conicet.gov.ar:11336/133396 |
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Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seedsNunes Nesi, AdrianoAlseekh, Salehde Oliveira Silva, Franklin MagnumOmranian, NooshinLichtenstein, GabrielMirnezhad, MohammadRomero González, Roman R.Sabio y Garcia, Julia VeronicaConte, MarianaLeiss, Kirsten A.Klinkhamer, Peter G. L.Nikoloski, ZoranCarrari, Fernando OscarFernie, Alisdair R.LEAF METABOLISMMETABOLITE NETWORKMETABOLITE QTLTOMATOhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Introduction: To date, most studies of natural variation and metabolite quantitative trait loci (mQTL) in tomato have focused on fruit metabolism, leaving aside the identification of genomic regions involved in the regulation of leaf metabolism. Objective: This study was conducted to identify leaf mQTL in tomato and to assess the association of leaf metabolites and physiological traits with the metabolite levels from other tissues. Methods: The analysis of components of leaf metabolism was performed by phenotypying 76 tomato ILs with chromosome segments of the wild species Solanum pennellii in the genetic background of a cultivated tomato (S. lycopersicum) variety M82. The plants were cultivated in two different environments in independent years and samples were harvested from mature leaves of non-flowering plants at the middle of the light period. The non-targeted metabolite profiling was obtained by gas chromatography time-of-flight mass spectrometry (GC-TOF-MS). With the data set obtained in this study and already published metabolomics data from seed and fruit, we performed QTL mapping, heritability and correlation analyses. Results: Changes in metabolite contents were evident in the ILs that are potentially important with respect to stress responses and plant physiology. By analyzing the obtained data, we identified 42 positive and 76 negative mQTL involved in carbon and nitrogen metabolism. Conclusions: Overall, these findings allowed the identification of S. lycopersicum genome regions involved in the regulation of leaf primary carbon and nitrogen metabolism, as well as the association of leaf metabolites with metabolites from seeds and fruits.Fil: Nunes Nesi, Adriano. Max Planck Institute Of Molecular Plant Physiology; Alemania. Universidade Federal de Viçosa.; BrasilFil: Alseekh, Saleh. Center Of Plant Systems Biology And Biotechnology; Bulgaria. Max Planck Institute Of Molecular Plant Physiology; AlemaniaFil: de Oliveira Silva, Franklin Magnum. Universidade Federal de Viçosa.; BrasilFil: Omranian, Nooshin. Max Planck Institute Of Molecular Plant Physiology; Alemania. Center Of Plant Systems Biology And Biotechnology; BulgariaFil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Investigaciones en Microbiología y Parasitología Médica. Universidad de Buenos Aires. Facultad de Medicina. Instituto de Investigaciones en Microbiología y Parasitología Médica; ArgentinaFil: Mirnezhad, Mohammad. Leiden University; Países BajosFil: Romero González, Roman R.. Leiden University; Países BajosFil: Sabio y Garcia, Julia Veronica. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; ArgentinaFil: Leiss, Kirsten A.. Leiden University; Países BajosFil: Klinkhamer, Peter G. L.. Leiden University; Países BajosFil: Nikoloski, Zoran. University of Potsdam; Alemania. Max Planck Institute of Molecular Plant Physiology; AlemaniaFil: Carrari, Fernando Oscar. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; ArgentinaFil: Fernie, Alisdair R.. Max Planck Institute of Molecular Plant Physiology; Alemania. Center of Plant System Biology and Biotechnology; BulgariaSpringer2019-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/133396Nunes Nesi, Adriano; Alseekh, Saleh; de Oliveira Silva, Franklin Magnum; Omranian, Nooshin; Lichtenstein, Gabriel; et al.; Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds; Springer; Metabolomics; 15; 4; 4-2019; 1-131573-3882CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007/s11306-019-1503-8info:eu-repo/semantics/altIdentifier/doi/10.1007/s11306-019-1503-8info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:54:23Zoai:ri.conicet.gov.ar:11336/133396instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:54:23.512CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds |
title |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds |
spellingShingle |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds Nunes Nesi, Adriano LEAF METABOLISM METABOLITE NETWORK METABOLITE QTL TOMATO |
title_short |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds |
title_full |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds |
title_fullStr |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds |
title_full_unstemmed |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds |
title_sort |
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds |
dc.creator.none.fl_str_mv |
Nunes Nesi, Adriano Alseekh, Saleh de Oliveira Silva, Franklin Magnum Omranian, Nooshin Lichtenstein, Gabriel Mirnezhad, Mohammad Romero González, Roman R. Sabio y Garcia, Julia Veronica Conte, Mariana Leiss, Kirsten A. Klinkhamer, Peter G. L. Nikoloski, Zoran Carrari, Fernando Oscar Fernie, Alisdair R. |
author |
Nunes Nesi, Adriano |
author_facet |
Nunes Nesi, Adriano Alseekh, Saleh de Oliveira Silva, Franklin Magnum Omranian, Nooshin Lichtenstein, Gabriel Mirnezhad, Mohammad Romero González, Roman R. Sabio y Garcia, Julia Veronica Conte, Mariana Leiss, Kirsten A. Klinkhamer, Peter G. L. Nikoloski, Zoran Carrari, Fernando Oscar Fernie, Alisdair R. |
author_role |
author |
author2 |
Alseekh, Saleh de Oliveira Silva, Franklin Magnum Omranian, Nooshin Lichtenstein, Gabriel Mirnezhad, Mohammad Romero González, Roman R. Sabio y Garcia, Julia Veronica Conte, Mariana Leiss, Kirsten A. Klinkhamer, Peter G. L. Nikoloski, Zoran Carrari, Fernando Oscar Fernie, Alisdair R. |
author2_role |
author author author author author author author author author author author author author |
dc.subject.none.fl_str_mv |
LEAF METABOLISM METABOLITE NETWORK METABOLITE QTL TOMATO |
topic |
LEAF METABOLISM METABOLITE NETWORK METABOLITE QTL TOMATO |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Introduction: To date, most studies of natural variation and metabolite quantitative trait loci (mQTL) in tomato have focused on fruit metabolism, leaving aside the identification of genomic regions involved in the regulation of leaf metabolism. Objective: This study was conducted to identify leaf mQTL in tomato and to assess the association of leaf metabolites and physiological traits with the metabolite levels from other tissues. Methods: The analysis of components of leaf metabolism was performed by phenotypying 76 tomato ILs with chromosome segments of the wild species Solanum pennellii in the genetic background of a cultivated tomato (S. lycopersicum) variety M82. The plants were cultivated in two different environments in independent years and samples were harvested from mature leaves of non-flowering plants at the middle of the light period. The non-targeted metabolite profiling was obtained by gas chromatography time-of-flight mass spectrometry (GC-TOF-MS). With the data set obtained in this study and already published metabolomics data from seed and fruit, we performed QTL mapping, heritability and correlation analyses. Results: Changes in metabolite contents were evident in the ILs that are potentially important with respect to stress responses and plant physiology. By analyzing the obtained data, we identified 42 positive and 76 negative mQTL involved in carbon and nitrogen metabolism. Conclusions: Overall, these findings allowed the identification of S. lycopersicum genome regions involved in the regulation of leaf primary carbon and nitrogen metabolism, as well as the association of leaf metabolites with metabolites from seeds and fruits. Fil: Nunes Nesi, Adriano. Max Planck Institute Of Molecular Plant Physiology; Alemania. Universidade Federal de Viçosa.; Brasil Fil: Alseekh, Saleh. Center Of Plant Systems Biology And Biotechnology; Bulgaria. Max Planck Institute Of Molecular Plant Physiology; Alemania Fil: de Oliveira Silva, Franklin Magnum. Universidade Federal de Viçosa.; Brasil Fil: Omranian, Nooshin. Max Planck Institute Of Molecular Plant Physiology; Alemania. Center Of Plant Systems Biology And Biotechnology; Bulgaria Fil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Investigaciones en Microbiología y Parasitología Médica. Universidad de Buenos Aires. Facultad de Medicina. Instituto de Investigaciones en Microbiología y Parasitología Médica; Argentina Fil: Mirnezhad, Mohammad. Leiden University; Países Bajos Fil: Romero González, Roman R.. Leiden University; Países Bajos Fil: Sabio y Garcia, Julia Veronica. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina Fil: Leiss, Kirsten A.. Leiden University; Países Bajos Fil: Klinkhamer, Peter G. L.. Leiden University; Países Bajos Fil: Nikoloski, Zoran. University of Potsdam; Alemania. Max Planck Institute of Molecular Plant Physiology; Alemania Fil: Carrari, Fernando Oscar. Instituto Nacional de Tecnología Agropecuaria. Centro Nacional de Investigaciones Agropecuarias Castelar. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina Fil: Fernie, Alisdair R.. Max Planck Institute of Molecular Plant Physiology; Alemania. Center of Plant System Biology and Biotechnology; Bulgaria |
description |
Introduction: To date, most studies of natural variation and metabolite quantitative trait loci (mQTL) in tomato have focused on fruit metabolism, leaving aside the identification of genomic regions involved in the regulation of leaf metabolism. Objective: This study was conducted to identify leaf mQTL in tomato and to assess the association of leaf metabolites and physiological traits with the metabolite levels from other tissues. Methods: The analysis of components of leaf metabolism was performed by phenotypying 76 tomato ILs with chromosome segments of the wild species Solanum pennellii in the genetic background of a cultivated tomato (S. lycopersicum) variety M82. The plants were cultivated in two different environments in independent years and samples were harvested from mature leaves of non-flowering plants at the middle of the light period. The non-targeted metabolite profiling was obtained by gas chromatography time-of-flight mass spectrometry (GC-TOF-MS). With the data set obtained in this study and already published metabolomics data from seed and fruit, we performed QTL mapping, heritability and correlation analyses. Results: Changes in metabolite contents were evident in the ILs that are potentially important with respect to stress responses and plant physiology. By analyzing the obtained data, we identified 42 positive and 76 negative mQTL involved in carbon and nitrogen metabolism. Conclusions: Overall, these findings allowed the identification of S. lycopersicum genome regions involved in the regulation of leaf primary carbon and nitrogen metabolism, as well as the association of leaf metabolites with metabolites from seeds and fruits. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-04 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/133396 Nunes Nesi, Adriano; Alseekh, Saleh; de Oliveira Silva, Franklin Magnum; Omranian, Nooshin; Lichtenstein, Gabriel; et al.; Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds; Springer; Metabolomics; 15; 4; 4-2019; 1-13 1573-3882 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/133396 |
identifier_str_mv |
Nunes Nesi, Adriano; Alseekh, Saleh; de Oliveira Silva, Franklin Magnum; Omranian, Nooshin; Lichtenstein, Gabriel; et al.; Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds; Springer; Metabolomics; 15; 4; 4-2019; 1-13 1573-3882 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007/s11306-019-1503-8 info:eu-repo/semantics/altIdentifier/doi/10.1007/s11306-019-1503-8 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Springer |
publisher.none.fl_str_mv |
Springer |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) |
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CONICET Digital (CONICET) |
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Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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13.13397 |