North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)

Autores
Maughan, Peter J.; Jarvis, David E.; de la Cruz Torres, Eulogio; Jaggi, Kate E.; Warner, Heather C.; Marcheschi, Ashley K.; Bertero, Hector Daniel; Gomez Pando, Luz; Fuentes, Francisco; Mayta Anco, Mayela E.; Curti, Ramiro Nestor; Rey, Elodie; Tester, Mark; Jellen, Eric N.
Año de publicación
2024
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Pitseed goosefoot (Chenopodium berlandieri) is a free-living North American member of an allotetraploid complex that includes the Andean pseudocereal quinoa (C. quinoa). Like quinoa, pitseed goosefoot was domesticated, possibly independently, in eastern North America (subsp. jonesianum) and Mesoamerica (subsp. nuttaliae). To test the utility of C. berlandieri as a resource for quinoa breeding, we produced the whole-genome DNA sequence of PI 433,231, a huauzontle from Puebla, México. The 1.295 Gb genome was assembled into 18 pseudomolecules and annotated using RNAseq data from multiple tissues. Alignment with the v.2.0 genome of Chilean-origin C. quinoa cv. ‘QQ74’ revealed several inversions and a 4A-6B reciprocal translocation. Despite these rearrangements, some quinoa x pitseed goosefoot crosses produce highly fertile hybrids with faithful recombination, as evidenced by a high-density SNP linkage map constructed from a Bolivian quinoa ‘Real-1’ × BYU 937 (Texas coastal pitseed goosefoot) F2 population. Recombination in that cross was comparable to a ‘Real-1’ × BYU 1101 (Argentine C. hircinum) F2 population. Furthermore, SNP-based phylogenetic and population structure analyses of 90 accessions supported the hypothesis of multiple independent domestications and descent from a common 4 × ancestor, with a likely North American Center of Origin.
Fil: Maughan, Peter J.. University Brigham Young; Estados Unidos
Fil: Jarvis, David E.. University Brigham Young; Estados Unidos
Fil: de la Cruz Torres, Eulogio. University Brigham Young; Estados Unidos
Fil: Jaggi, Kate E.. University Brigham Young; Estados Unidos
Fil: Warner, Heather C.. University Brigham Young; Estados Unidos
Fil: Marcheschi, Ashley K.. University Brigham Young; Estados Unidos
Fil: Bertero, Hector Daniel. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Producción Vegetal. Cátedra de Producción Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Gomez Pando, Luz. University Brigham Young; Estados Unidos
Fil: Fuentes, Francisco. University Brigham Young; Estados Unidos
Fil: Mayta Anco, Mayela E.. University Brigham Young; Estados Unidos
Fil: Curti, Ramiro Nestor. Universidad Nacional de Salta. Facultad de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Rey, Elodie. University Brigham Young; Estados Unidos
Fil: Tester, Mark. University Brigham Young; Estados Unidos
Fil: Jellen, Eric N.. University Brigham Young; Estados Unidos
Materia
GENETIC RESOURCES
GENOME ASSEMBLY
CHENOPODIUM
QUINOA BREEDING
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/237865
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/237865
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network_name_str CONICET Digital (CONICET)
spelling North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)Maughan, Peter J.Jarvis, David E.de la Cruz Torres, EulogioJaggi, Kate E.Warner, Heather C.Marcheschi, Ashley K.Bertero, Hector DanielGomez Pando, LuzFuentes, FranciscoMayta Anco, Mayela E.Curti, Ramiro NestorRey, ElodieTester, MarkJellen, Eric N.GENETIC RESOURCESGENOME ASSEMBLYCHENOPODIUMQUINOA BREEDINGhttps://purl.org/becyt/ford/4.1https://purl.org/becyt/ford/4Pitseed goosefoot (Chenopodium berlandieri) is a free-living North American member of an allotetraploid complex that includes the Andean pseudocereal quinoa (C. quinoa). Like quinoa, pitseed goosefoot was domesticated, possibly independently, in eastern North America (subsp. jonesianum) and Mesoamerica (subsp. nuttaliae). To test the utility of C. berlandieri as a resource for quinoa breeding, we produced the whole-genome DNA sequence of PI 433,231, a huauzontle from Puebla, México. The 1.295 Gb genome was assembled into 18 pseudomolecules and annotated using RNAseq data from multiple tissues. Alignment with the v.2.0 genome of Chilean-origin C. quinoa cv. ‘QQ74’ revealed several inversions and a 4A-6B reciprocal translocation. Despite these rearrangements, some quinoa x pitseed goosefoot crosses produce highly fertile hybrids with faithful recombination, as evidenced by a high-density SNP linkage map constructed from a Bolivian quinoa ‘Real-1’ × BYU 937 (Texas coastal pitseed goosefoot) F2 population. Recombination in that cross was comparable to a ‘Real-1’ × BYU 1101 (Argentine C. hircinum) F2 population. Furthermore, SNP-based phylogenetic and population structure analyses of 90 accessions supported the hypothesis of multiple independent domestications and descent from a common 4 × ancestor, with a likely North American Center of Origin.Fil: Maughan, Peter J.. University Brigham Young; Estados UnidosFil: Jarvis, David E.. University Brigham Young; Estados UnidosFil: de la Cruz Torres, Eulogio. University Brigham Young; Estados UnidosFil: Jaggi, Kate E.. University Brigham Young; Estados UnidosFil: Warner, Heather C.. University Brigham Young; Estados UnidosFil: Marcheschi, Ashley K.. University Brigham Young; Estados UnidosFil: Bertero, Hector Daniel. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Producción Vegetal. Cátedra de Producción Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Gomez Pando, Luz. University Brigham Young; Estados UnidosFil: Fuentes, Francisco. University Brigham Young; Estados UnidosFil: Mayta Anco, Mayela E.. University Brigham Young; Estados UnidosFil: Curti, Ramiro Nestor. Universidad Nacional de Salta. Facultad de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Rey, Elodie. University Brigham Young; Estados UnidosFil: Tester, Mark. University Brigham Young; Estados UnidosFil: Jellen, Eric N.. University Brigham Young; Estados UnidosNature2024-05info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/237865Maughan, Peter J.; Jarvis, David E.; de la Cruz Torres, Eulogio; Jaggi, Kate E.; Warner, Heather C.; et al.; North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa); Nature; Scientific Reports; 14; 1; 5-2024; 1-132045-2322CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41598-024-63106-8info:eu-repo/semantics/altIdentifier/doi/10.1038/s41598-024-63106-8info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:27:49Zoai:ri.conicet.gov.ar:11336/237865instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:27:49.9CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
title North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
spellingShingle North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
Maughan, Peter J.
GENETIC RESOURCES
GENOME ASSEMBLY
CHENOPODIUM
QUINOA BREEDING
title_short North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
title_full North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
title_fullStr North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
title_full_unstemmed North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
title_sort North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
dc.creator.none.fl_str_mv Maughan, Peter J.
Jarvis, David E.
de la Cruz Torres, Eulogio
Jaggi, Kate E.
Warner, Heather C.
Marcheschi, Ashley K.
Bertero, Hector Daniel
Gomez Pando, Luz
Fuentes, Francisco
Mayta Anco, Mayela E.
Curti, Ramiro Nestor
Rey, Elodie
Tester, Mark
Jellen, Eric N.
author Maughan, Peter J.
author_facet Maughan, Peter J.
Jarvis, David E.
de la Cruz Torres, Eulogio
Jaggi, Kate E.
Warner, Heather C.
Marcheschi, Ashley K.
Bertero, Hector Daniel
Gomez Pando, Luz
Fuentes, Francisco
Mayta Anco, Mayela E.
Curti, Ramiro Nestor
Rey, Elodie
Tester, Mark
Jellen, Eric N.
author_role author
author2 Jarvis, David E.
de la Cruz Torres, Eulogio
Jaggi, Kate E.
Warner, Heather C.
Marcheschi, Ashley K.
Bertero, Hector Daniel
Gomez Pando, Luz
Fuentes, Francisco
Mayta Anco, Mayela E.
Curti, Ramiro Nestor
Rey, Elodie
Tester, Mark
Jellen, Eric N.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv GENETIC RESOURCES
GENOME ASSEMBLY
CHENOPODIUM
QUINOA BREEDING
topic GENETIC RESOURCES
GENOME ASSEMBLY
CHENOPODIUM
QUINOA BREEDING
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.1
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv Pitseed goosefoot (Chenopodium berlandieri) is a free-living North American member of an allotetraploid complex that includes the Andean pseudocereal quinoa (C. quinoa). Like quinoa, pitseed goosefoot was domesticated, possibly independently, in eastern North America (subsp. jonesianum) and Mesoamerica (subsp. nuttaliae). To test the utility of C. berlandieri as a resource for quinoa breeding, we produced the whole-genome DNA sequence of PI 433,231, a huauzontle from Puebla, México. The 1.295 Gb genome was assembled into 18 pseudomolecules and annotated using RNAseq data from multiple tissues. Alignment with the v.2.0 genome of Chilean-origin C. quinoa cv. ‘QQ74’ revealed several inversions and a 4A-6B reciprocal translocation. Despite these rearrangements, some quinoa x pitseed goosefoot crosses produce highly fertile hybrids with faithful recombination, as evidenced by a high-density SNP linkage map constructed from a Bolivian quinoa ‘Real-1’ × BYU 937 (Texas coastal pitseed goosefoot) F2 population. Recombination in that cross was comparable to a ‘Real-1’ × BYU 1101 (Argentine C. hircinum) F2 population. Furthermore, SNP-based phylogenetic and population structure analyses of 90 accessions supported the hypothesis of multiple independent domestications and descent from a common 4 × ancestor, with a likely North American Center of Origin.
Fil: Maughan, Peter J.. University Brigham Young; Estados Unidos
Fil: Jarvis, David E.. University Brigham Young; Estados Unidos
Fil: de la Cruz Torres, Eulogio. University Brigham Young; Estados Unidos
Fil: Jaggi, Kate E.. University Brigham Young; Estados Unidos
Fil: Warner, Heather C.. University Brigham Young; Estados Unidos
Fil: Marcheschi, Ashley K.. University Brigham Young; Estados Unidos
Fil: Bertero, Hector Daniel. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Producción Vegetal. Cátedra de Producción Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Gomez Pando, Luz. University Brigham Young; Estados Unidos
Fil: Fuentes, Francisco. University Brigham Young; Estados Unidos
Fil: Mayta Anco, Mayela E.. University Brigham Young; Estados Unidos
Fil: Curti, Ramiro Nestor. Universidad Nacional de Salta. Facultad de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Rey, Elodie. University Brigham Young; Estados Unidos
Fil: Tester, Mark. University Brigham Young; Estados Unidos
Fil: Jellen, Eric N.. University Brigham Young; Estados Unidos
description Pitseed goosefoot (Chenopodium berlandieri) is a free-living North American member of an allotetraploid complex that includes the Andean pseudocereal quinoa (C. quinoa). Like quinoa, pitseed goosefoot was domesticated, possibly independently, in eastern North America (subsp. jonesianum) and Mesoamerica (subsp. nuttaliae). To test the utility of C. berlandieri as a resource for quinoa breeding, we produced the whole-genome DNA sequence of PI 433,231, a huauzontle from Puebla, México. The 1.295 Gb genome was assembled into 18 pseudomolecules and annotated using RNAseq data from multiple tissues. Alignment with the v.2.0 genome of Chilean-origin C. quinoa cv. ‘QQ74’ revealed several inversions and a 4A-6B reciprocal translocation. Despite these rearrangements, some quinoa x pitseed goosefoot crosses produce highly fertile hybrids with faithful recombination, as evidenced by a high-density SNP linkage map constructed from a Bolivian quinoa ‘Real-1’ × BYU 937 (Texas coastal pitseed goosefoot) F2 population. Recombination in that cross was comparable to a ‘Real-1’ × BYU 1101 (Argentine C. hircinum) F2 population. Furthermore, SNP-based phylogenetic and population structure analyses of 90 accessions supported the hypothesis of multiple independent domestications and descent from a common 4 × ancestor, with a likely North American Center of Origin.
publishDate 2024
dc.date.none.fl_str_mv 2024-05
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/237865
Maughan, Peter J.; Jarvis, David E.; de la Cruz Torres, Eulogio; Jaggi, Kate E.; Warner, Heather C.; et al.; North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa); Nature; Scientific Reports; 14; 1; 5-2024; 1-13
2045-2322
CONICET Digital
CONICET
url http://hdl.handle.net/11336/237865
identifier_str_mv Maughan, Peter J.; Jarvis, David E.; de la Cruz Torres, Eulogio; Jaggi, Kate E.; Warner, Heather C.; et al.; North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa); Nature; Scientific Reports; 14; 1; 5-2024; 1-13
2045-2322
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41598-024-63106-8
info:eu-repo/semantics/altIdentifier/doi/10.1038/s41598-024-63106-8
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Nature
publisher.none.fl_str_mv Nature
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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