Creating 2D Occupancy Plots Using plot2DO

Autores
Beati, Maria Paula; Chereji, Razvan V.
Año de publicación
2020
Idioma
inglés
Tipo de recurso
documento de conferencia
Estado
versión publicada
Descripción
The 2D occupancy (2DO) plot is useful for an initial quality check of MNase-seq data, in order to assess the degree of chromatin digestion, and also for getting insights about the nucleosome organization, as well as about the MNase digestion kinetics.plot2DO is a flexible tool for evaluating the quality of MNase-seq and MNase-ChIP-seq data, and for visualizing the distribution of nucleosomes near the functional regions of the genome.
Fil: Beati, Maria Paula. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; Argentina
Fil: Chereji, Razvan V.. National Institutes of Health; Estados Unidos
BioC 2020: Where Software and Biology Connect
Boston
Estados Unidos
Bioconductor Comité Organizador
Materia
MNaseSeq
NucleosomePositioning
Visualization
Software
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/201398
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/201398
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Creating 2D Occupancy Plots Using plot2DOBeati, Maria PaulaChereji, Razvan V.MNaseSeqNucleosomePositioningVisualizationSoftwarehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The 2D occupancy (2DO) plot is useful for an initial quality check of MNase-seq data, in order to assess the degree of chromatin digestion, and also for getting insights about the nucleosome organization, as well as about the MNase digestion kinetics.plot2DO is a flexible tool for evaluating the quality of MNase-seq and MNase-ChIP-seq data, and for visualizing the distribution of nucleosomes near the functional regions of the genome.Fil: Beati, Maria Paula. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; ArgentinaFil: Chereji, Razvan V.. National Institutes of Health; Estados UnidosBioC 2020: Where Software and Biology ConnectBostonEstados UnidosBioconductor Comité OrganizadorF1000Research2020info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObjectConferenciaJournalhttp://purl.org/coar/resource_type/c_5794info:ar-repo/semantics/documentoDeConferenciaapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/201398Creating 2D Occupancy Plots Using plot2DO; BioC 2020: Where Software and Biology Connect; Boston; Estados Unidos; 2020; 1-82046-1402CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.7490/f1000research.1118043.1info:eu-repo/semantics/altIdentifier/url/https://f1000research.com/slides/9-724info:eu-repo/semantics/altIdentifier/url/http://bioc2020.bioconductor.org/Internacionalinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-22T12:09:31Zoai:ri.conicet.gov.ar:11336/201398instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-22 12:09:31.52CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Creating 2D Occupancy Plots Using plot2DO
title Creating 2D Occupancy Plots Using plot2DO
spellingShingle Creating 2D Occupancy Plots Using plot2DO
Beati, Maria Paula
MNaseSeq
NucleosomePositioning
Visualization
Software
title_short Creating 2D Occupancy Plots Using plot2DO
title_full Creating 2D Occupancy Plots Using plot2DO
title_fullStr Creating 2D Occupancy Plots Using plot2DO
title_full_unstemmed Creating 2D Occupancy Plots Using plot2DO
title_sort Creating 2D Occupancy Plots Using plot2DO
dc.creator.none.fl_str_mv Beati, Maria Paula
Chereji, Razvan V.
author Beati, Maria Paula
author_facet Beati, Maria Paula
Chereji, Razvan V.
author_role author
author2 Chereji, Razvan V.
author2_role author
dc.subject.none.fl_str_mv MNaseSeq
NucleosomePositioning
Visualization
Software
topic MNaseSeq
NucleosomePositioning
Visualization
Software
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The 2D occupancy (2DO) plot is useful for an initial quality check of MNase-seq data, in order to assess the degree of chromatin digestion, and also for getting insights about the nucleosome organization, as well as about the MNase digestion kinetics.plot2DO is a flexible tool for evaluating the quality of MNase-seq and MNase-ChIP-seq data, and for visualizing the distribution of nucleosomes near the functional regions of the genome.
Fil: Beati, Maria Paula. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; Argentina
Fil: Chereji, Razvan V.. National Institutes of Health; Estados Unidos
BioC 2020: Where Software and Biology Connect
Boston
Estados Unidos
Bioconductor Comité Organizador
description The 2D occupancy (2DO) plot is useful for an initial quality check of MNase-seq data, in order to assess the degree of chromatin digestion, and also for getting insights about the nucleosome organization, as well as about the MNase digestion kinetics.plot2DO is a flexible tool for evaluating the quality of MNase-seq and MNase-ChIP-seq data, and for visualizing the distribution of nucleosomes near the functional regions of the genome.
publishDate 2020
dc.date.none.fl_str_mv 2020
dc.type.none.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/conferenceObject
Conferencia
Journal
http://purl.org/coar/resource_type/c_5794
info:ar-repo/semantics/documentoDeConferencia
status_str publishedVersion
format conferenceObject
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/201398
Creating 2D Occupancy Plots Using plot2DO; BioC 2020: Where Software and Biology Connect; Boston; Estados Unidos; 2020; 1-8
2046-1402
CONICET Digital
CONICET
url http://hdl.handle.net/11336/201398
identifier_str_mv Creating 2D Occupancy Plots Using plot2DO; BioC 2020: Where Software and Biology Connect; Boston; Estados Unidos; 2020; 1-8
2046-1402
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.7490/f1000research.1118043.1
info:eu-repo/semantics/altIdentifier/url/https://f1000research.com/slides/9-724
info:eu-repo/semantics/altIdentifier/url/http://bioc2020.bioconductor.org/
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.coverage.none.fl_str_mv Internacional
dc.publisher.none.fl_str_mv F1000Research
publisher.none.fl_str_mv F1000Research
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 12.982451

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