SSR-based assessment of genetic diversity in South American Vitis vinifera varieties

Autores
Martínez, Liliana Estela; Cavagnaro, Pablo Federico; Masuelli, Ricardo Williams; Zúñiga, M.
Año de publicación
2006
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Six SSR loci, previously developed for grapevine, were analyzed to evaluate the genetic variability and cultivar relatedness in a collection of 25 autochthonous Vitis vinifera varieties from Perú and Argentina. The number of alleles per locus ranged from 6 to 13, while the number of microsatellites genotypes varied between 9 and 16. The expected heterozygosity varied between 0.71 and 0.89 and the polymorphism information content ranged from 0.70 to 0.88 indicating that the SSRs were highly informative. It was possible to identify 76 different genotypes, with all accessions showing-at least one-specific combination of alleles. Triallelic loci were observed with some SSR. Sequence analysis revealed that variation in the number of repeats and insertion/deletions (InDels) accounted for the polymorphisms observed. Clustering analysis resulted in four separate groups of varieties sharing at least 75% of the markers. A few cases of synonymies were found within the Peruvian accessions. Varieties were clustered following a general pattern of shared morphological and enological traits, rather than geographical origin.
Fil: Martínez, Liliana Estela. Universidad Nacional de Cuyo; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina
Fil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; Argentina
Fil: Masuelli, Ricardo Williams. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; Argentina
Fil: Zúñiga, M.. Ministerio de Educación de Peru; Perú
Materia
GENETIC DIVERSITY
GRAPE
MICROSATELLITE
SYNONYMS
VITIS VINIFERA L.
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/147641
Acceder
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network_acronym_str CONICETDig
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network_name_str CONICET Digital (CONICET)
spelling SSR-based assessment of genetic diversity in South American Vitis vinifera varietiesMartínez, Liliana EstelaCavagnaro, Pablo FedericoMasuelli, Ricardo WilliamsZúñiga, M.GENETIC DIVERSITYGRAPEMICROSATELLITESYNONYMSVITIS VINIFERA L.https://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Six SSR loci, previously developed for grapevine, were analyzed to evaluate the genetic variability and cultivar relatedness in a collection of 25 autochthonous Vitis vinifera varieties from Perú and Argentina. The number of alleles per locus ranged from 6 to 13, while the number of microsatellites genotypes varied between 9 and 16. The expected heterozygosity varied between 0.71 and 0.89 and the polymorphism information content ranged from 0.70 to 0.88 indicating that the SSRs were highly informative. It was possible to identify 76 different genotypes, with all accessions showing-at least one-specific combination of alleles. Triallelic loci were observed with some SSR. Sequence analysis revealed that variation in the number of repeats and insertion/deletions (InDels) accounted for the polymorphisms observed. Clustering analysis resulted in four separate groups of varieties sharing at least 75% of the markers. A few cases of synonymies were found within the Peruvian accessions. Varieties were clustered following a general pattern of shared morphological and enological traits, rather than geographical origin.Fil: Martínez, Liliana Estela. Universidad Nacional de Cuyo; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; ArgentinaFil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; ArgentinaFil: Masuelli, Ricardo Williams. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; ArgentinaFil: Zúñiga, M.. Ministerio de Educación de Peru; PerúElsevier Ireland2006-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/147641Martínez, Liliana Estela; Cavagnaro, Pablo Federico; Masuelli, Ricardo Williams; Zúñiga, M.; SSR-based assessment of genetic diversity in South American Vitis vinifera varieties; Elsevier Ireland; Plant Science; 170; 6; 6-2006; 1036-10440168-9452CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.plantsci.2005.12.006info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S0168945205004292info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T15:10:11Zoai:ri.conicet.gov.ar:11336/147641instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 15:10:11.794CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
title SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
spellingShingle SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
Martínez, Liliana Estela
GENETIC DIVERSITY
GRAPE
MICROSATELLITE
SYNONYMS
VITIS VINIFERA L.
title_short SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
title_full SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
title_fullStr SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
title_full_unstemmed SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
title_sort SSR-based assessment of genetic diversity in South American Vitis vinifera varieties
dc.creator.none.fl_str_mv Martínez, Liliana Estela
Cavagnaro, Pablo Federico
Masuelli, Ricardo Williams
Zúñiga, M.
author Martínez, Liliana Estela
author_facet Martínez, Liliana Estela
Cavagnaro, Pablo Federico
Masuelli, Ricardo Williams
Zúñiga, M.
author_role author
author2 Cavagnaro, Pablo Federico
Masuelli, Ricardo Williams
Zúñiga, M.
author2_role author
author
author
dc.subject.none.fl_str_mv GENETIC DIVERSITY
GRAPE
MICROSATELLITE
SYNONYMS
VITIS VINIFERA L.
topic GENETIC DIVERSITY
GRAPE
MICROSATELLITE
SYNONYMS
VITIS VINIFERA L.
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Six SSR loci, previously developed for grapevine, were analyzed to evaluate the genetic variability and cultivar relatedness in a collection of 25 autochthonous Vitis vinifera varieties from Perú and Argentina. The number of alleles per locus ranged from 6 to 13, while the number of microsatellites genotypes varied between 9 and 16. The expected heterozygosity varied between 0.71 and 0.89 and the polymorphism information content ranged from 0.70 to 0.88 indicating that the SSRs were highly informative. It was possible to identify 76 different genotypes, with all accessions showing-at least one-specific combination of alleles. Triallelic loci were observed with some SSR. Sequence analysis revealed that variation in the number of repeats and insertion/deletions (InDels) accounted for the polymorphisms observed. Clustering analysis resulted in four separate groups of varieties sharing at least 75% of the markers. A few cases of synonymies were found within the Peruvian accessions. Varieties were clustered following a general pattern of shared morphological and enological traits, rather than geographical origin.
Fil: Martínez, Liliana Estela. Universidad Nacional de Cuyo; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina
Fil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; Argentina
Fil: Masuelli, Ricardo Williams. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; Argentina
Fil: Zúñiga, M.. Ministerio de Educación de Peru; Perú
description Six SSR loci, previously developed for grapevine, were analyzed to evaluate the genetic variability and cultivar relatedness in a collection of 25 autochthonous Vitis vinifera varieties from Perú and Argentina. The number of alleles per locus ranged from 6 to 13, while the number of microsatellites genotypes varied between 9 and 16. The expected heterozygosity varied between 0.71 and 0.89 and the polymorphism information content ranged from 0.70 to 0.88 indicating that the SSRs were highly informative. It was possible to identify 76 different genotypes, with all accessions showing-at least one-specific combination of alleles. Triallelic loci were observed with some SSR. Sequence analysis revealed that variation in the number of repeats and insertion/deletions (InDels) accounted for the polymorphisms observed. Clustering analysis resulted in four separate groups of varieties sharing at least 75% of the markers. A few cases of synonymies were found within the Peruvian accessions. Varieties were clustered following a general pattern of shared morphological and enological traits, rather than geographical origin.
publishDate 2006
dc.date.none.fl_str_mv 2006-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/147641
Martínez, Liliana Estela; Cavagnaro, Pablo Federico; Masuelli, Ricardo Williams; Zúñiga, M.; SSR-based assessment of genetic diversity in South American Vitis vinifera varieties; Elsevier Ireland; Plant Science; 170; 6; 6-2006; 1036-1044
0168-9452
CONICET Digital
CONICET
url http://hdl.handle.net/11336/147641
identifier_str_mv Martínez, Liliana Estela; Cavagnaro, Pablo Federico; Masuelli, Ricardo Williams; Zúñiga, M.; SSR-based assessment of genetic diversity in South American Vitis vinifera varieties; Elsevier Ireland; Plant Science; 170; 6; 6-2006; 1036-1044
0168-9452
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1016/j.plantsci.2005.12.006
info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S0168945205004292
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Elsevier Ireland
publisher.none.fl_str_mv Elsevier Ireland
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1846083250410225664
score 13.22299

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