A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T

Autores
Siddaramappa, Shivakumara; Challacombe, Jean F.; de Castro, Rosana Esther; Pfeiffer, Friedhelm; Sastre, Diego Emiliano; Gimenez, Maria Ines; Paggi, Roberto Alejandro; Detter, John C.; Davenport, Karen W.; Goodwin, Lynne A.; Kyrpides, Nikos; Tapia, Roxanne; Pitluck, Samuel; Lucas, Susan; Woyke, Tanja; Maupin Furlow, Julie A
Año de publicación
2012
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Background: Interspecific hybrids between S. cerevisiae × S. kudriavzevii have frequently been detected in wine and beer fermentations. Significant physiological differences among parental and hybrid strains under different stress conditions have been evidenced. In this study, we used comparative genome hybridization analysis to evaluate the genome composition of different S. cerevisiae × S. kudriavzevii natural hybrids isolated from wine and beer fermentations to infer their evolutionary origins and to figure out the potential role of common S. kudriavzevii genefraction present in these hybrids. Results: Comparative genomic hybridization (CGH) and ploidy analyses carried out in this study confirmed the presence of individual and differential chromosomal composition patterns for most S. cerevisiae × S. kudriavzevii hybrids from beer and wine. All hybrids share a common set of depleted S. cerevisiae genes, which also are depleted or absent in the wine strains studied so far, and the presence a common set of S. kudriavzevii genes, which may be associated with their capability to grow at low temperatures. Finally, a maximum parsimony analysis of chromosomal rearrangement events, occurred in the hybrid genomes, indicated the presence of two maingroups of wine hybrids and different divergent lineages of brewing strains.Conclusion: Our data suggest that wine and beer S. cerevisiae × S. kudriavzevii hybrids have been originated by different rare-mating events involving a diploid wine S. cerevisiae and a haploid or diploid European S. kudriavzevii strains. Hybrids maintain several S. kudriavzevii genes involved in cold adaptation as well as those related to S. kudriavzevii mitochondrial functions.
Fil: Siddaramappa, Shivakumara. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Challacombe, Jean F.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: de Castro, Rosana Esther. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Pfeiffer, Friedhelm. Max Planck Institute Of Biochemistry.; Alemania
Fil: Sastre, Diego Emiliano. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Gimenez, Maria Ines. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Paggi, Roberto Alejandro. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Detter, John C.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Davenport, Karen W.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Goodwin, Lynne A.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Kyrpides, Nikos. DOE Joint Genome Institute; Estados Unidos
Fil: Tapia, Roxanne. DOE Joint Genome Institute; Estados Unidos. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Pitluck, Samuel. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Lucas, Susan. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Woyke, Tanja. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Maupin Furlow, Julie A. University of Florida; Estados Unidos
Materia
Natrialba
haloarchaeon
alkaliphilic
genome
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/272454
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/272454
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099TSiddaramappa, ShivakumaraChallacombe, Jean F.de Castro, Rosana EstherPfeiffer, FriedhelmSastre, Diego EmilianoGimenez, Maria InesPaggi, Roberto AlejandroDetter, John C.Davenport, Karen W.Goodwin, Lynne A.Kyrpides, NikosTapia, RoxannePitluck, SamuelLucas, SusanWoyke, TanjaMaupin Furlow, Julie ANatrialbahaloarchaeonalkaliphilicgenomehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Background: Interspecific hybrids between S. cerevisiae × S. kudriavzevii have frequently been detected in wine and beer fermentations. Significant physiological differences among parental and hybrid strains under different stress conditions have been evidenced. In this study, we used comparative genome hybridization analysis to evaluate the genome composition of different S. cerevisiae × S. kudriavzevii natural hybrids isolated from wine and beer fermentations to infer their evolutionary origins and to figure out the potential role of common S. kudriavzevii genefraction present in these hybrids. Results: Comparative genomic hybridization (CGH) and ploidy analyses carried out in this study confirmed the presence of individual and differential chromosomal composition patterns for most S. cerevisiae × S. kudriavzevii hybrids from beer and wine. All hybrids share a common set of depleted S. cerevisiae genes, which also are depleted or absent in the wine strains studied so far, and the presence a common set of S. kudriavzevii genes, which may be associated with their capability to grow at low temperatures. Finally, a maximum parsimony analysis of chromosomal rearrangement events, occurred in the hybrid genomes, indicated the presence of two maingroups of wine hybrids and different divergent lineages of brewing strains.Conclusion: Our data suggest that wine and beer S. cerevisiae × S. kudriavzevii hybrids have been originated by different rare-mating events involving a diploid wine S. cerevisiae and a haploid or diploid European S. kudriavzevii strains. Hybrids maintain several S. kudriavzevii genes involved in cold adaptation as well as those related to S. kudriavzevii mitochondrial functions.Fil: Siddaramappa, Shivakumara. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Challacombe, Jean F.. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: de Castro, Rosana Esther. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; ArgentinaFil: Pfeiffer, Friedhelm. Max Planck Institute Of Biochemistry.; AlemaniaFil: Sastre, Diego Emiliano. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; ArgentinaFil: Gimenez, Maria Ines. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; ArgentinaFil: Paggi, Roberto Alejandro. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; ArgentinaFil: Detter, John C.. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Davenport, Karen W.. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Goodwin, Lynne A.. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Kyrpides, Nikos. DOE Joint Genome Institute; Estados UnidosFil: Tapia, Roxanne. DOE Joint Genome Institute; Estados Unidos. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Pitluck, Samuel. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Lucas, Susan. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Woyke, Tanja. Los Alamos National High Magnetic Field Laboratory; Estados UnidosFil: Maupin Furlow, Julie A. University of Florida; Estados UnidosBioMed Central2012-05info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/272454Siddaramappa, Shivakumara; Challacombe, Jean F.; de Castro, Rosana Esther; Pfeiffer, Friedhelm; Sastre, Diego Emiliano; et al.; A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T; BioMed Central; BMC Genomics; 13; 1; 5-2012; 165-1801471-2164CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1186/1471-2164-13-165info:eu-repo/semantics/altIdentifier/url/https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-13-165info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T15:00:29Zoai:ri.conicet.gov.ar:11336/272454instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 15:00:29.752CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
title A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
spellingShingle A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
Siddaramappa, Shivakumara
Natrialba
haloarchaeon
alkaliphilic
genome
title_short A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
title_full A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
title_fullStr A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
title_full_unstemmed A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
title_sort A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
dc.creator.none.fl_str_mv Siddaramappa, Shivakumara
Challacombe, Jean F.
de Castro, Rosana Esther
Pfeiffer, Friedhelm
Sastre, Diego Emiliano
Gimenez, Maria Ines
Paggi, Roberto Alejandro
Detter, John C.
Davenport, Karen W.
Goodwin, Lynne A.
Kyrpides, Nikos
Tapia, Roxanne
Pitluck, Samuel
Lucas, Susan
Woyke, Tanja
Maupin Furlow, Julie A
author Siddaramappa, Shivakumara
author_facet Siddaramappa, Shivakumara
Challacombe, Jean F.
de Castro, Rosana Esther
Pfeiffer, Friedhelm
Sastre, Diego Emiliano
Gimenez, Maria Ines
Paggi, Roberto Alejandro
Detter, John C.
Davenport, Karen W.
Goodwin, Lynne A.
Kyrpides, Nikos
Tapia, Roxanne
Pitluck, Samuel
Lucas, Susan
Woyke, Tanja
Maupin Furlow, Julie A
author_role author
author2 Challacombe, Jean F.
de Castro, Rosana Esther
Pfeiffer, Friedhelm
Sastre, Diego Emiliano
Gimenez, Maria Ines
Paggi, Roberto Alejandro
Detter, John C.
Davenport, Karen W.
Goodwin, Lynne A.
Kyrpides, Nikos
Tapia, Roxanne
Pitluck, Samuel
Lucas, Susan
Woyke, Tanja
Maupin Furlow, Julie A
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Natrialba
haloarchaeon
alkaliphilic
genome
topic Natrialba
haloarchaeon
alkaliphilic
genome
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Background: Interspecific hybrids between S. cerevisiae × S. kudriavzevii have frequently been detected in wine and beer fermentations. Significant physiological differences among parental and hybrid strains under different stress conditions have been evidenced. In this study, we used comparative genome hybridization analysis to evaluate the genome composition of different S. cerevisiae × S. kudriavzevii natural hybrids isolated from wine and beer fermentations to infer their evolutionary origins and to figure out the potential role of common S. kudriavzevii genefraction present in these hybrids. Results: Comparative genomic hybridization (CGH) and ploidy analyses carried out in this study confirmed the presence of individual and differential chromosomal composition patterns for most S. cerevisiae × S. kudriavzevii hybrids from beer and wine. All hybrids share a common set of depleted S. cerevisiae genes, which also are depleted or absent in the wine strains studied so far, and the presence a common set of S. kudriavzevii genes, which may be associated with their capability to grow at low temperatures. Finally, a maximum parsimony analysis of chromosomal rearrangement events, occurred in the hybrid genomes, indicated the presence of two maingroups of wine hybrids and different divergent lineages of brewing strains.Conclusion: Our data suggest that wine and beer S. cerevisiae × S. kudriavzevii hybrids have been originated by different rare-mating events involving a diploid wine S. cerevisiae and a haploid or diploid European S. kudriavzevii strains. Hybrids maintain several S. kudriavzevii genes involved in cold adaptation as well as those related to S. kudriavzevii mitochondrial functions.
Fil: Siddaramappa, Shivakumara. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Challacombe, Jean F.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: de Castro, Rosana Esther. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Pfeiffer, Friedhelm. Max Planck Institute Of Biochemistry.; Alemania
Fil: Sastre, Diego Emiliano. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Gimenez, Maria Ines. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Paggi, Roberto Alejandro. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Biológicas. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Biológicas; Argentina
Fil: Detter, John C.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Davenport, Karen W.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Goodwin, Lynne A.. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Kyrpides, Nikos. DOE Joint Genome Institute; Estados Unidos
Fil: Tapia, Roxanne. DOE Joint Genome Institute; Estados Unidos. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Pitluck, Samuel. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Lucas, Susan. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Woyke, Tanja. Los Alamos National High Magnetic Field Laboratory; Estados Unidos
Fil: Maupin Furlow, Julie A. University of Florida; Estados Unidos
description Background: Interspecific hybrids between S. cerevisiae × S. kudriavzevii have frequently been detected in wine and beer fermentations. Significant physiological differences among parental and hybrid strains under different stress conditions have been evidenced. In this study, we used comparative genome hybridization analysis to evaluate the genome composition of different S. cerevisiae × S. kudriavzevii natural hybrids isolated from wine and beer fermentations to infer their evolutionary origins and to figure out the potential role of common S. kudriavzevii genefraction present in these hybrids. Results: Comparative genomic hybridization (CGH) and ploidy analyses carried out in this study confirmed the presence of individual and differential chromosomal composition patterns for most S. cerevisiae × S. kudriavzevii hybrids from beer and wine. All hybrids share a common set of depleted S. cerevisiae genes, which also are depleted or absent in the wine strains studied so far, and the presence a common set of S. kudriavzevii genes, which may be associated with their capability to grow at low temperatures. Finally, a maximum parsimony analysis of chromosomal rearrangement events, occurred in the hybrid genomes, indicated the presence of two maingroups of wine hybrids and different divergent lineages of brewing strains.Conclusion: Our data suggest that wine and beer S. cerevisiae × S. kudriavzevii hybrids have been originated by different rare-mating events involving a diploid wine S. cerevisiae and a haploid or diploid European S. kudriavzevii strains. Hybrids maintain several S. kudriavzevii genes involved in cold adaptation as well as those related to S. kudriavzevii mitochondrial functions.
publishDate 2012
dc.date.none.fl_str_mv 2012-05
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/272454
Siddaramappa, Shivakumara; Challacombe, Jean F.; de Castro, Rosana Esther; Pfeiffer, Friedhelm; Sastre, Diego Emiliano; et al.; A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T; BioMed Central; BMC Genomics; 13; 1; 5-2012; 165-180
1471-2164
CONICET Digital
CONICET
url http://hdl.handle.net/11336/272454
identifier_str_mv Siddaramappa, Shivakumara; Challacombe, Jean F.; de Castro, Rosana Esther; Pfeiffer, Friedhelm; Sastre, Diego Emiliano; et al.; A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T; BioMed Central; BMC Genomics; 13; 1; 5-2012; 165-180
1471-2164
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1186/1471-2164-13-165
info:eu-repo/semantics/altIdentifier/url/https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-13-165
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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