Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
- Autores
- Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; Breymaier, Matthew; Bustos, Diego Martin; Clokie, Samuel J.; Gothilf, Yoav; Esnault, Caroline; Iuvone, P. Michael; Mason, Christopher E.; Ochocinska, Margaret J.; Tovin, Adi; Wang, Charles; Xu, Pinxian; Zhu, Jinhang; Dale, Ryan; Klein, David C.
- Año de publicación
- 2020
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.
Fil: Chang, Eric. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Fu, Cong. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Coon, Steven L.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Alon, Shahar. No especifíca;
Fil: Bozinoski, Marjan. No especifíca;
Fil: Breymaier, Matthew. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Bustos, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos; Argentina
Fil: Clokie, Samuel J.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Gothilf, Yoav. No especifíca;
Fil: Esnault, Caroline. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Iuvone, P. Michael. Emory University School of Medicine; Estados Unidos
Fil: Mason, Christopher E.. No especifíca;
Fil: Ochocinska, Margaret J.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Tovin, Adi. No especifíca;
Fil: Wang, Charles. Loma Linda University; Estados Unidos
Fil: Xu, Pinxian. No especifíca;
Fil: Zhu, Jinhang. No especifíca;
Fil: Dale, Ryan. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Klein, David C.. National Instituto of Child Health & Human Development; Estados Unidos - Materia
-
BIOLOGICAL RHYTHMS
NEUROTRANSCRIPTOMICS
PINEAL
RETINA
RNA-SEQ
TRANSCRIPTOME
WEBPAGE - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/142038
Ver los metadatos del registro completo
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oai:ri.conicet.gov.ar:11336/142038 |
network_acronym_str |
CONICETDig |
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network_name_str |
CONICET Digital (CONICET) |
spelling |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retinaChang, EricFu, CongCoon, Steven L.Alon, ShaharBozinoski, MarjanBreymaier, MatthewBustos, Diego MartinClokie, Samuel J.Gothilf, YoavEsnault, CarolineIuvone, P. MichaelMason, Christopher E.Ochocinska, Margaret J.Tovin, AdiWang, CharlesXu, PinxianZhu, JinhangDale, RyanKlein, David C.BIOLOGICAL RHYTHMSNEUROTRANSCRIPTOMICSPINEALRETINARNA-SEQTRANSCRIPTOMEWEBPAGEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.Fil: Chang, Eric. National Instituto of Child Health & Human Development; Estados UnidosFil: Fu, Cong. National Instituto of Child Health & Human Development; Estados UnidosFil: Coon, Steven L.. National Instituto of Child Health & Human Development; Estados UnidosFil: Alon, Shahar. No especifíca;Fil: Bozinoski, Marjan. No especifíca;Fil: Breymaier, Matthew. National Instituto of Child Health & Human Development; Estados UnidosFil: Bustos, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos; ArgentinaFil: Clokie, Samuel J.. National Instituto of Child Health & Human Development; Estados UnidosFil: Gothilf, Yoav. No especifíca;Fil: Esnault, Caroline. National Instituto of Child Health & Human Development; Estados UnidosFil: Iuvone, P. Michael. Emory University School of Medicine; Estados UnidosFil: Mason, Christopher E.. No especifíca;Fil: Ochocinska, Margaret J.. National Instituto of Child Health & Human Development; Estados UnidosFil: Tovin, Adi. No especifíca;Fil: Wang, Charles. Loma Linda University; Estados UnidosFil: Xu, Pinxian. No especifíca;Fil: Zhu, Jinhang. No especifíca;Fil: Dale, Ryan. National Instituto of Child Health & Human Development; Estados UnidosFil: Klein, David C.. National Instituto of Child Health & Human Development; Estados UnidosWiley Blackwell Publishing, Inc2020-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/142038Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; et al.; Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina; Wiley Blackwell Publishing, Inc; Journal of Pineal Research; 69; 3; 6-2020; 1-280742-3098CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/jpi.12673info:eu-repo/semantics/altIdentifier/doi/10.1111/jpi.12673info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:47:48Zoai:ri.conicet.gov.ar:11336/142038instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:47:49.252CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina |
title |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina |
spellingShingle |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina Chang, Eric BIOLOGICAL RHYTHMS NEUROTRANSCRIPTOMICS PINEAL RETINA RNA-SEQ TRANSCRIPTOME WEBPAGE |
title_short |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina |
title_full |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina |
title_fullStr |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina |
title_full_unstemmed |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina |
title_sort |
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina |
dc.creator.none.fl_str_mv |
Chang, Eric Fu, Cong Coon, Steven L. Alon, Shahar Bozinoski, Marjan Breymaier, Matthew Bustos, Diego Martin Clokie, Samuel J. Gothilf, Yoav Esnault, Caroline Iuvone, P. Michael Mason, Christopher E. Ochocinska, Margaret J. Tovin, Adi Wang, Charles Xu, Pinxian Zhu, Jinhang Dale, Ryan Klein, David C. |
author |
Chang, Eric |
author_facet |
Chang, Eric Fu, Cong Coon, Steven L. Alon, Shahar Bozinoski, Marjan Breymaier, Matthew Bustos, Diego Martin Clokie, Samuel J. Gothilf, Yoav Esnault, Caroline Iuvone, P. Michael Mason, Christopher E. Ochocinska, Margaret J. Tovin, Adi Wang, Charles Xu, Pinxian Zhu, Jinhang Dale, Ryan Klein, David C. |
author_role |
author |
author2 |
Fu, Cong Coon, Steven L. Alon, Shahar Bozinoski, Marjan Breymaier, Matthew Bustos, Diego Martin Clokie, Samuel J. Gothilf, Yoav Esnault, Caroline Iuvone, P. Michael Mason, Christopher E. Ochocinska, Margaret J. Tovin, Adi Wang, Charles Xu, Pinxian Zhu, Jinhang Dale, Ryan Klein, David C. |
author2_role |
author author author author author author author author author author author author author author author author author author |
dc.subject.none.fl_str_mv |
BIOLOGICAL RHYTHMS NEUROTRANSCRIPTOMICS PINEAL RETINA RNA-SEQ TRANSCRIPTOME WEBPAGE |
topic |
BIOLOGICAL RHYTHMS NEUROTRANSCRIPTOMICS PINEAL RETINA RNA-SEQ TRANSCRIPTOME WEBPAGE |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research. Fil: Chang, Eric. National Instituto of Child Health & Human Development; Estados Unidos Fil: Fu, Cong. National Instituto of Child Health & Human Development; Estados Unidos Fil: Coon, Steven L.. National Instituto of Child Health & Human Development; Estados Unidos Fil: Alon, Shahar. No especifíca; Fil: Bozinoski, Marjan. No especifíca; Fil: Breymaier, Matthew. National Instituto of Child Health & Human Development; Estados Unidos Fil: Bustos, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos; Argentina Fil: Clokie, Samuel J.. National Instituto of Child Health & Human Development; Estados Unidos Fil: Gothilf, Yoav. No especifíca; Fil: Esnault, Caroline. National Instituto of Child Health & Human Development; Estados Unidos Fil: Iuvone, P. Michael. Emory University School of Medicine; Estados Unidos Fil: Mason, Christopher E.. No especifíca; Fil: Ochocinska, Margaret J.. National Instituto of Child Health & Human Development; Estados Unidos Fil: Tovin, Adi. No especifíca; Fil: Wang, Charles. Loma Linda University; Estados Unidos Fil: Xu, Pinxian. No especifíca; Fil: Zhu, Jinhang. No especifíca; Fil: Dale, Ryan. National Instituto of Child Health & Human Development; Estados Unidos Fil: Klein, David C.. National Instituto of Child Health & Human Development; Estados Unidos |
description |
The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-06 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/142038 Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; et al.; Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina; Wiley Blackwell Publishing, Inc; Journal of Pineal Research; 69; 3; 6-2020; 1-28 0742-3098 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/142038 |
identifier_str_mv |
Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; et al.; Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina; Wiley Blackwell Publishing, Inc; Journal of Pineal Research; 69; 3; 6-2020; 1-28 0742-3098 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/jpi.12673 info:eu-repo/semantics/altIdentifier/doi/10.1111/jpi.12673 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Wiley Blackwell Publishing, Inc |
publisher.none.fl_str_mv |
Wiley Blackwell Publishing, Inc |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
_version_ |
1844614523028242432 |
score |
13.070432 |