Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina

Autores
Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; Breymaier, Matthew; Bustos, Diego Martin; Clokie, Samuel J.; Gothilf, Yoav; Esnault, Caroline; Iuvone, P. Michael; Mason, Christopher E.; Ochocinska, Margaret J.; Tovin, Adi; Wang, Charles; Xu, Pinxian; Zhu, Jinhang; Dale, Ryan; Klein, David C.
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.
Fil: Chang, Eric. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Fu, Cong. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Coon, Steven L.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Alon, Shahar. No especifíca;
Fil: Bozinoski, Marjan. No especifíca;
Fil: Breymaier, Matthew. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Bustos, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos; Argentina
Fil: Clokie, Samuel J.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Gothilf, Yoav. No especifíca;
Fil: Esnault, Caroline. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Iuvone, P. Michael. Emory University School of Medicine; Estados Unidos
Fil: Mason, Christopher E.. No especifíca;
Fil: Ochocinska, Margaret J.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Tovin, Adi. No especifíca;
Fil: Wang, Charles. Loma Linda University; Estados Unidos
Fil: Xu, Pinxian. No especifíca;
Fil: Zhu, Jinhang. No especifíca;
Fil: Dale, Ryan. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Klein, David C.. National Instituto of Child Health & Human Development; Estados Unidos
Materia
BIOLOGICAL RHYTHMS
NEUROTRANSCRIPTOMICS
PINEAL
RETINA
RNA-SEQ
TRANSCRIPTOME
WEBPAGE
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/142038
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/142038
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retinaChang, EricFu, CongCoon, Steven L.Alon, ShaharBozinoski, MarjanBreymaier, MatthewBustos, Diego MartinClokie, Samuel J.Gothilf, YoavEsnault, CarolineIuvone, P. MichaelMason, Christopher E.Ochocinska, Margaret J.Tovin, AdiWang, CharlesXu, PinxianZhu, JinhangDale, RyanKlein, David C.BIOLOGICAL RHYTHMSNEUROTRANSCRIPTOMICSPINEALRETINARNA-SEQTRANSCRIPTOMEWEBPAGEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.Fil: Chang, Eric. National Instituto of Child Health & Human Development; Estados UnidosFil: Fu, Cong. National Instituto of Child Health & Human Development; Estados UnidosFil: Coon, Steven L.. National Instituto of Child Health & Human Development; Estados UnidosFil: Alon, Shahar. No especifíca;Fil: Bozinoski, Marjan. No especifíca;Fil: Breymaier, Matthew. National Instituto of Child Health & Human Development; Estados UnidosFil: Bustos, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos; ArgentinaFil: Clokie, Samuel J.. National Instituto of Child Health & Human Development; Estados UnidosFil: Gothilf, Yoav. No especifíca;Fil: Esnault, Caroline. National Instituto of Child Health & Human Development; Estados UnidosFil: Iuvone, P. Michael. Emory University School of Medicine; Estados UnidosFil: Mason, Christopher E.. No especifíca;Fil: Ochocinska, Margaret J.. National Instituto of Child Health & Human Development; Estados UnidosFil: Tovin, Adi. No especifíca;Fil: Wang, Charles. Loma Linda University; Estados UnidosFil: Xu, Pinxian. No especifíca;Fil: Zhu, Jinhang. No especifíca;Fil: Dale, Ryan. National Instituto of Child Health & Human Development; Estados UnidosFil: Klein, David C.. National Instituto of Child Health & Human Development; Estados UnidosWiley Blackwell Publishing, Inc2020-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/142038Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; et al.; Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina; Wiley Blackwell Publishing, Inc; Journal of Pineal Research; 69; 3; 6-2020; 1-280742-3098CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/jpi.12673info:eu-repo/semantics/altIdentifier/doi/10.1111/jpi.12673info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T15:46:34Zoai:ri.conicet.gov.ar:11336/142038instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 15:46:34.834CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
title Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
spellingShingle Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
Chang, Eric
BIOLOGICAL RHYTHMS
NEUROTRANSCRIPTOMICS
PINEAL
RETINA
RNA-SEQ
TRANSCRIPTOME
WEBPAGE
title_short Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
title_full Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
title_fullStr Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
title_full_unstemmed Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
title_sort Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
dc.creator.none.fl_str_mv Chang, Eric
Fu, Cong
Coon, Steven L.
Alon, Shahar
Bozinoski, Marjan
Breymaier, Matthew
Bustos, Diego Martin
Clokie, Samuel J.
Gothilf, Yoav
Esnault, Caroline
Iuvone, P. Michael
Mason, Christopher E.
Ochocinska, Margaret J.
Tovin, Adi
Wang, Charles
Xu, Pinxian
Zhu, Jinhang
Dale, Ryan
Klein, David C.
author Chang, Eric
author_facet Chang, Eric
Fu, Cong
Coon, Steven L.
Alon, Shahar
Bozinoski, Marjan
Breymaier, Matthew
Bustos, Diego Martin
Clokie, Samuel J.
Gothilf, Yoav
Esnault, Caroline
Iuvone, P. Michael
Mason, Christopher E.
Ochocinska, Margaret J.
Tovin, Adi
Wang, Charles
Xu, Pinxian
Zhu, Jinhang
Dale, Ryan
Klein, David C.
author_role author
author2 Fu, Cong
Coon, Steven L.
Alon, Shahar
Bozinoski, Marjan
Breymaier, Matthew
Bustos, Diego Martin
Clokie, Samuel J.
Gothilf, Yoav
Esnault, Caroline
Iuvone, P. Michael
Mason, Christopher E.
Ochocinska, Margaret J.
Tovin, Adi
Wang, Charles
Xu, Pinxian
Zhu, Jinhang
Dale, Ryan
Klein, David C.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv BIOLOGICAL RHYTHMS
NEUROTRANSCRIPTOMICS
PINEAL
RETINA
RNA-SEQ
TRANSCRIPTOME
WEBPAGE
topic BIOLOGICAL RHYTHMS
NEUROTRANSCRIPTOMICS
PINEAL
RETINA
RNA-SEQ
TRANSCRIPTOME
WEBPAGE
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.
Fil: Chang, Eric. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Fu, Cong. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Coon, Steven L.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Alon, Shahar. No especifíca;
Fil: Bozinoski, Marjan. No especifíca;
Fil: Breymaier, Matthew. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Bustos, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos; Argentina
Fil: Clokie, Samuel J.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Gothilf, Yoav. No especifíca;
Fil: Esnault, Caroline. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Iuvone, P. Michael. Emory University School of Medicine; Estados Unidos
Fil: Mason, Christopher E.. No especifíca;
Fil: Ochocinska, Margaret J.. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Tovin, Adi. No especifíca;
Fil: Wang, Charles. Loma Linda University; Estados Unidos
Fil: Xu, Pinxian. No especifíca;
Fil: Zhu, Jinhang. No especifíca;
Fil: Dale, Ryan. National Instituto of Child Health & Human Development; Estados Unidos
Fil: Klein, David C.. National Instituto of Child Health & Human Development; Estados Unidos
description The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.
publishDate 2020
dc.date.none.fl_str_mv 2020-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/142038
Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; et al.; Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina; Wiley Blackwell Publishing, Inc; Journal of Pineal Research; 69; 3; 6-2020; 1-28
0742-3098
CONICET Digital
CONICET
url http://hdl.handle.net/11336/142038
identifier_str_mv Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; et al.; Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina; Wiley Blackwell Publishing, Inc; Journal of Pineal Research; 69; 3; 6-2020; 1-28
0742-3098
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/jpi.12673
info:eu-repo/semantics/altIdentifier/doi/10.1111/jpi.12673
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Wiley Blackwell Publishing, Inc
publisher.none.fl_str_mv Wiley Blackwell Publishing, Inc
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1846083562362634240
score 13.22299

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