IEDB-AR: immune epitope database - analysis resource in 2019

Autores
Dhanda, Sandeep Kumar; Mahajan, Swapnil; Paul, Sinu; Yan, Zhen; Kim, Haeuk; Jespersen, Martin Closter; Jurtz, Vanessa; Andreatta, Massimo; Greenbaum, Jason A; Marcatili, Paolo; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The Immune Epitope Database Analysis Resource (IEDB-AR, http://tools.iedb.org/) is a companion website to the IEDB that provides computational tools focused on the prediction and analysis of B and T cell epitopes. All of the tools are freely available through the public website and many are also available through a REST API and/or a downloadable command-line tool. A virtual machine image of the entire site is also freely available for non-commercial use and contains most of the tools on the public site. Here, we describe the tools and functionalities that are available in the IEDB-AR, focusing on the 10 new tools that have been added since the last report in the 2012 NAR webserver edition. In addition, many of the tools that were already hosted on the site in 2012 have received updates to newest versions, including NetMHC, NetMHCpan, BepiPred and DiscoTope. Overall, this IEDB-AR update provides a substantial set of updated and novel features for epitope prediction and analysis.
Fil: Dhanda, Sandeep Kumar. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Mahajan, Swapnil. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Paul, Sinu. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Yan, Zhen. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Kim, Haeuk. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Jespersen, Martin Closter. Technical University of Denmark; Dinamarca
Fil: Jurtz, Vanessa. Technical University of Denmark; Dinamarca
Fil: Andreatta, Massimo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas; Argentina. Technical University of Denmark; Dinamarca
Fil: Greenbaum, Jason A. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Marcatili, Paolo. Technical University of Denmark; Dinamarca
Fil: Sette, Alessandro. La Jolla Institute for Allergy and Immunology; Estados Unidos. University of California; Estados Unidos
Fil: Nielsen, Morten. Technical University of Denmark; Dinamarca. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas; Argentina
Fil: Peters, Bjoern. University of California; Estados Unidos. La Jolla Institute for Allergy and Immunology; Estados Unidos
Materia
IEDB
MHC
T cell
Epitope
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/126843
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/126843
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling IEDB-AR: immune epitope database - analysis resource in 2019Dhanda, Sandeep KumarMahajan, SwapnilPaul, SinuYan, ZhenKim, HaeukJespersen, Martin ClosterJurtz, VanessaAndreatta, MassimoGreenbaum, Jason AMarcatili, PaoloSette, AlessandroNielsen, MortenPeters, BjoernIEDBMHCT cellEpitopehttps://purl.org/becyt/ford/3.5https://purl.org/becyt/ford/3The Immune Epitope Database Analysis Resource (IEDB-AR, http://tools.iedb.org/) is a companion website to the IEDB that provides computational tools focused on the prediction and analysis of B and T cell epitopes. All of the tools are freely available through the public website and many are also available through a REST API and/or a downloadable command-line tool. A virtual machine image of the entire site is also freely available for non-commercial use and contains most of the tools on the public site. Here, we describe the tools and functionalities that are available in the IEDB-AR, focusing on the 10 new tools that have been added since the last report in the 2012 NAR webserver edition. In addition, many of the tools that were already hosted on the site in 2012 have received updates to newest versions, including NetMHC, NetMHCpan, BepiPred and DiscoTope. Overall, this IEDB-AR update provides a substantial set of updated and novel features for epitope prediction and analysis.Fil: Dhanda, Sandeep Kumar. La Jolla Institute for Allergy and Immunology; Estados UnidosFil: Mahajan, Swapnil. La Jolla Institute for Allergy and Immunology; Estados UnidosFil: Paul, Sinu. La Jolla Institute for Allergy and Immunology; Estados UnidosFil: Yan, Zhen. La Jolla Institute for Allergy and Immunology; Estados UnidosFil: Kim, Haeuk. La Jolla Institute for Allergy and Immunology; Estados UnidosFil: Jespersen, Martin Closter. Technical University of Denmark; DinamarcaFil: Jurtz, Vanessa. Technical University of Denmark; DinamarcaFil: Andreatta, Massimo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas; Argentina. Technical University of Denmark; DinamarcaFil: Greenbaum, Jason A. La Jolla Institute for Allergy and Immunology; Estados UnidosFil: Marcatili, Paolo. Technical University of Denmark; DinamarcaFil: Sette, Alessandro. La Jolla Institute for Allergy and Immunology; Estados Unidos. University of California; Estados UnidosFil: Nielsen, Morten. Technical University of Denmark; Dinamarca. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas; ArgentinaFil: Peters, Bjoern. University of California; Estados Unidos. La Jolla Institute for Allergy and Immunology; Estados UnidosOxford University Press2019-07-02info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/126843Dhanda, Sandeep Kumar; Mahajan, Swapnil; Paul, Sinu; Yan, Zhen; Kim, Haeuk; et al.; IEDB-AR: immune epitope database - analysis resource in 2019; Oxford University Press; Nucleic Acids Research; 47; W1; 2-7-2019; 502-5060305-10481362-4962CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/nar/article/47/W1/W502/5494780info:eu-repo/semantics/altIdentifier/doi/10.1093/nar/gkz452info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:34:20Zoai:ri.conicet.gov.ar:11336/126843instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:34:21.119CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv IEDB-AR: immune epitope database - analysis resource in 2019
title IEDB-AR: immune epitope database - analysis resource in 2019
spellingShingle IEDB-AR: immune epitope database - analysis resource in 2019
Dhanda, Sandeep Kumar
IEDB
MHC
T cell
Epitope
title_short IEDB-AR: immune epitope database - analysis resource in 2019
title_full IEDB-AR: immune epitope database - analysis resource in 2019
title_fullStr IEDB-AR: immune epitope database - analysis resource in 2019
title_full_unstemmed IEDB-AR: immune epitope database - analysis resource in 2019
title_sort IEDB-AR: immune epitope database - analysis resource in 2019
dc.creator.none.fl_str_mv Dhanda, Sandeep Kumar
Mahajan, Swapnil
Paul, Sinu
Yan, Zhen
Kim, Haeuk
Jespersen, Martin Closter
Jurtz, Vanessa
Andreatta, Massimo
Greenbaum, Jason A
Marcatili, Paolo
Sette, Alessandro
Nielsen, Morten
Peters, Bjoern
author Dhanda, Sandeep Kumar
author_facet Dhanda, Sandeep Kumar
Mahajan, Swapnil
Paul, Sinu
Yan, Zhen
Kim, Haeuk
Jespersen, Martin Closter
Jurtz, Vanessa
Andreatta, Massimo
Greenbaum, Jason A
Marcatili, Paolo
Sette, Alessandro
Nielsen, Morten
Peters, Bjoern
author_role author
author2 Mahajan, Swapnil
Paul, Sinu
Yan, Zhen
Kim, Haeuk
Jespersen, Martin Closter
Jurtz, Vanessa
Andreatta, Massimo
Greenbaum, Jason A
Marcatili, Paolo
Sette, Alessandro
Nielsen, Morten
Peters, Bjoern
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv IEDB
MHC
T cell
Epitope
topic IEDB
MHC
T cell
Epitope
purl_subject.fl_str_mv https://purl.org/becyt/ford/3.5
https://purl.org/becyt/ford/3
dc.description.none.fl_txt_mv The Immune Epitope Database Analysis Resource (IEDB-AR, http://tools.iedb.org/) is a companion website to the IEDB that provides computational tools focused on the prediction and analysis of B and T cell epitopes. All of the tools are freely available through the public website and many are also available through a REST API and/or a downloadable command-line tool. A virtual machine image of the entire site is also freely available for non-commercial use and contains most of the tools on the public site. Here, we describe the tools and functionalities that are available in the IEDB-AR, focusing on the 10 new tools that have been added since the last report in the 2012 NAR webserver edition. In addition, many of the tools that were already hosted on the site in 2012 have received updates to newest versions, including NetMHC, NetMHCpan, BepiPred and DiscoTope. Overall, this IEDB-AR update provides a substantial set of updated and novel features for epitope prediction and analysis.
Fil: Dhanda, Sandeep Kumar. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Mahajan, Swapnil. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Paul, Sinu. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Yan, Zhen. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Kim, Haeuk. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Jespersen, Martin Closter. Technical University of Denmark; Dinamarca
Fil: Jurtz, Vanessa. Technical University of Denmark; Dinamarca
Fil: Andreatta, Massimo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas; Argentina. Technical University of Denmark; Dinamarca
Fil: Greenbaum, Jason A. La Jolla Institute for Allergy and Immunology; Estados Unidos
Fil: Marcatili, Paolo. Technical University of Denmark; Dinamarca
Fil: Sette, Alessandro. La Jolla Institute for Allergy and Immunology; Estados Unidos. University of California; Estados Unidos
Fil: Nielsen, Morten. Technical University of Denmark; Dinamarca. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas; Argentina
Fil: Peters, Bjoern. University of California; Estados Unidos. La Jolla Institute for Allergy and Immunology; Estados Unidos
description The Immune Epitope Database Analysis Resource (IEDB-AR, http://tools.iedb.org/) is a companion website to the IEDB that provides computational tools focused on the prediction and analysis of B and T cell epitopes. All of the tools are freely available through the public website and many are also available through a REST API and/or a downloadable command-line tool. A virtual machine image of the entire site is also freely available for non-commercial use and contains most of the tools on the public site. Here, we describe the tools and functionalities that are available in the IEDB-AR, focusing on the 10 new tools that have been added since the last report in the 2012 NAR webserver edition. In addition, many of the tools that were already hosted on the site in 2012 have received updates to newest versions, including NetMHC, NetMHCpan, BepiPred and DiscoTope. Overall, this IEDB-AR update provides a substantial set of updated and novel features for epitope prediction and analysis.
publishDate 2019
dc.date.none.fl_str_mv 2019-07-02
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/126843
Dhanda, Sandeep Kumar; Mahajan, Swapnil; Paul, Sinu; Yan, Zhen; Kim, Haeuk; et al.; IEDB-AR: immune epitope database - analysis resource in 2019; Oxford University Press; Nucleic Acids Research; 47; W1; 2-7-2019; 502-506
0305-1048
1362-4962
CONICET Digital
CONICET
url http://hdl.handle.net/11336/126843
identifier_str_mv Dhanda, Sandeep Kumar; Mahajan, Swapnil; Paul, Sinu; Yan, Zhen; Kim, Haeuk; et al.; IEDB-AR: immune epitope database - analysis resource in 2019; Oxford University Press; Nucleic Acids Research; 47; W1; 2-7-2019; 502-506
0305-1048
1362-4962
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/nar/article/47/W1/W502/5494780
info:eu-repo/semantics/altIdentifier/doi/10.1093/nar/gkz452
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1844614360355307520
score 13.070432

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