Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?

Autores
Dib, Julian Rafael; Wagenknecht, Martin; Farias, Maria Eugenia; Meinhardt, Friedhelm
Año de publicación
2015
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The term plasmid was originally coined for circular, extrachromosomal genetic elements. Today, plasmids are widely recognised not only as important factors facilitating genome restructuring but also as vehicles for the dissemination of beneficial characters within bacterial communities. Plasmid diversity has been uncovered by means of culture dependent or independent approaches, such as endogenous or exogenous plasmid isolation as well as PCR-based detection or transposon-aided capture, respectively. High-throughput-sequencing made possible to cover total plasmid populations in a given environment, i.e. the plasmidome, and allowed to address the quality and significance of self-replicating genetic elements. Since such efforts were and still are rather restricted to circular molecules, here we put equal emphasis on the linear plasmids which despite their frequent occurrence in a large number of bacteria are largely neglected in prevalent plasmidome conceptions.
Fil: Dib, Julian Rafael. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Wagenknecht, Martin. Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Münster.; Alemania
Fil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Meinhardt, Friedhelm. Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Münster.; Alemania
Materia
plasmidome
circular plasmid
linear plasmid
metagenomics
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/30694
Acceder
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network_name_str CONICET Digital (CONICET)
spelling Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?Dib, Julian RafaelWagenknecht, MartinFarias, Maria EugeniaMeinhardt, Friedhelmplasmidomecircular plasmidlinear plasmidmetagenomicshttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The term plasmid was originally coined for circular, extrachromosomal genetic elements. Today, plasmids are widely recognised not only as important factors facilitating genome restructuring but also as vehicles for the dissemination of beneficial characters within bacterial communities. Plasmid diversity has been uncovered by means of culture dependent or independent approaches, such as endogenous or exogenous plasmid isolation as well as PCR-based detection or transposon-aided capture, respectively. High-throughput-sequencing made possible to cover total plasmid populations in a given environment, i.e. the plasmidome, and allowed to address the quality and significance of self-replicating genetic elements. Since such efforts were and still are rather restricted to circular molecules, here we put equal emphasis on the linear plasmids which despite their frequent occurrence in a large number of bacteria are largely neglected in prevalent plasmidome conceptions.Fil: Dib, Julian Rafael. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; ArgentinaFil: Wagenknecht, Martin. Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Münster.; AlemaniaFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; ArgentinaFil: Meinhardt, Friedhelm. Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Münster.; AlemaniaFrontiers2015-05-26info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/30694Dib, Julian Rafael; Wagenknecht, Martin; Farias, Maria Eugenia; Meinhardt, Friedhelm; Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?; Frontiers; Frontiers in Microbiology; 6; 26-5-2015; 1-12; 4631664-302XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.3389/fmicb.2015.00463info:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fmicb.2015.00463/fullinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T10:00:28Zoai:ri.conicet.gov.ar:11336/30694instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 10:00:28.689CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
title Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
spellingShingle Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
Dib, Julian Rafael
plasmidome
circular plasmid
linear plasmid
metagenomics
title_short Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
title_full Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
title_fullStr Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
title_full_unstemmed Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
title_sort Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?
dc.creator.none.fl_str_mv Dib, Julian Rafael
Wagenknecht, Martin
Farias, Maria Eugenia
Meinhardt, Friedhelm
author Dib, Julian Rafael
author_facet Dib, Julian Rafael
Wagenknecht, Martin
Farias, Maria Eugenia
Meinhardt, Friedhelm
author_role author
author2 Wagenknecht, Martin
Farias, Maria Eugenia
Meinhardt, Friedhelm
author2_role author
author
author
dc.subject.none.fl_str_mv plasmidome
circular plasmid
linear plasmid
metagenomics
topic plasmidome
circular plasmid
linear plasmid
metagenomics
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The term plasmid was originally coined for circular, extrachromosomal genetic elements. Today, plasmids are widely recognised not only as important factors facilitating genome restructuring but also as vehicles for the dissemination of beneficial characters within bacterial communities. Plasmid diversity has been uncovered by means of culture dependent or independent approaches, such as endogenous or exogenous plasmid isolation as well as PCR-based detection or transposon-aided capture, respectively. High-throughput-sequencing made possible to cover total plasmid populations in a given environment, i.e. the plasmidome, and allowed to address the quality and significance of self-replicating genetic elements. Since such efforts were and still are rather restricted to circular molecules, here we put equal emphasis on the linear plasmids which despite their frequent occurrence in a large number of bacteria are largely neglected in prevalent plasmidome conceptions.
Fil: Dib, Julian Rafael. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Wagenknecht, Martin. Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Münster.; Alemania
Fil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Meinhardt, Friedhelm. Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Münster.; Alemania
description The term plasmid was originally coined for circular, extrachromosomal genetic elements. Today, plasmids are widely recognised not only as important factors facilitating genome restructuring but also as vehicles for the dissemination of beneficial characters within bacterial communities. Plasmid diversity has been uncovered by means of culture dependent or independent approaches, such as endogenous or exogenous plasmid isolation as well as PCR-based detection or transposon-aided capture, respectively. High-throughput-sequencing made possible to cover total plasmid populations in a given environment, i.e. the plasmidome, and allowed to address the quality and significance of self-replicating genetic elements. Since such efforts were and still are rather restricted to circular molecules, here we put equal emphasis on the linear plasmids which despite their frequent occurrence in a large number of bacteria are largely neglected in prevalent plasmidome conceptions.
publishDate 2015
dc.date.none.fl_str_mv 2015-05-26
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/30694
Dib, Julian Rafael; Wagenknecht, Martin; Farias, Maria Eugenia; Meinhardt, Friedhelm; Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?; Frontiers; Frontiers in Microbiology; 6; 26-5-2015; 1-12; 463
1664-302X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/30694
identifier_str_mv Dib, Julian Rafael; Wagenknecht, Martin; Farias, Maria Eugenia; Meinhardt, Friedhelm; Strategies and approaches in plasmidome studies, uncovering plasmid diversity disregarding of linear elements?; Frontiers; Frontiers in Microbiology; 6; 26-5-2015; 1-12; 463
1664-302X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.3389/fmicb.2015.00463
info:eu-repo/semantics/altIdentifier/url/https://www.frontiersin.org/articles/10.3389/fmicb.2015.00463/full
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Frontiers
publisher.none.fl_str_mv Frontiers
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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