Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches

Autores
Mohamed, María Florencia; Ruiz Rodríguez, Luciana Gabriela; Zorzoli, Maria Azul; Dorfmueller, Helge C.; Raya, Raul Ricardo; Mozzi, Fernanda Beatriz
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The Fructobacillus genus is a group of obligately fructophilic lactic acid bacteria (FLAB) that requires the use of fructose or another electron acceptor for their growth. In this work, we performed a comparative genomic analysis within the genus Fructobacillus by using 24 available genomes to evaluate genomic and metabolic differences among these organisms. In the genome of these strains, which varies between 1.15- and 1.75-Mbp, nineteen intact prophage regions, and seven complete CRISPR-Cas type II systems were found. Phylogenetic analyses located the studied genomes in two different clades. A pangenome analysis and a functional classification of their genes revealed that genomes of the first clade presented fewer genes involved in the synthesis of amino acids and other nitrogen compounds. Moreover, the presence of genes strictly related to the use of fructose and electron acceptors was variable within the genus, although these variations were not always related to the phylogeny.
Fil: Mohamed, María Florencia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
Fil: Ruiz Rodríguez, Luciana Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
Fil: Zorzoli, Maria Azul. University of Dundee. School of Life Sciences. Division of Molecular Microbiology; Reino Unido. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Dorfmueller, Helge C.. University of Dundee. School of Life Sciences. Division of Molecular Microbiology; Reino Unido
Fil: Raya, Raul Ricardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
Fil: Mozzi, Fernanda Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
Materia
FRUCTOBACILLUS
GENOMIC DIVERSITY
FRUCTOPHILIC LACTIC ACID BACTERIA
FRUCTOSE
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/238263
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/238263
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Genomic diversity in Fructobacillus spp. isolated from fructose-rich nichesMohamed, María FlorenciaRuiz Rodríguez, Luciana GabrielaZorzoli, Maria AzulDorfmueller, Helge C.Raya, Raul RicardoMozzi, Fernanda BeatrizFRUCTOBACILLUSGENOMIC DIVERSITYFRUCTOPHILIC LACTIC ACID BACTERIAFRUCTOSEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The Fructobacillus genus is a group of obligately fructophilic lactic acid bacteria (FLAB) that requires the use of fructose or another electron acceptor for their growth. In this work, we performed a comparative genomic analysis within the genus Fructobacillus by using 24 available genomes to evaluate genomic and metabolic differences among these organisms. In the genome of these strains, which varies between 1.15- and 1.75-Mbp, nineteen intact prophage regions, and seven complete CRISPR-Cas type II systems were found. Phylogenetic analyses located the studied genomes in two different clades. A pangenome analysis and a functional classification of their genes revealed that genomes of the first clade presented fewer genes involved in the synthesis of amino acids and other nitrogen compounds. Moreover, the presence of genes strictly related to the use of fructose and electron acceptors was variable within the genus, although these variations were not always related to the phylogeny.Fil: Mohamed, María Florencia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; ArgentinaFil: Ruiz Rodríguez, Luciana Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; ArgentinaFil: Zorzoli, Maria Azul. University of Dundee. School of Life Sciences. Division of Molecular Microbiology; Reino Unido. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Dorfmueller, Helge C.. University of Dundee. School of Life Sciences. Division of Molecular Microbiology; Reino UnidoFil: Raya, Raul Ricardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; ArgentinaFil: Mozzi, Fernanda Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; ArgentinaPublic Library of Science2023-02-16info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/238263Mohamed, María Florencia; Ruiz Rodríguez, Luciana Gabriela; Zorzoli, Maria Azul; Dorfmueller, Helge C.; Raya, Raul Ricardo; et al.; Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches; Public Library of Science; Plos One; 18; 2; 16-2-2023; 1-25;e02818391932-6203CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0281839info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0281839info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:34:51Zoai:ri.conicet.gov.ar:11336/238263instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:34:51.661CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
title Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
spellingShingle Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
Mohamed, María Florencia
FRUCTOBACILLUS
GENOMIC DIVERSITY
FRUCTOPHILIC LACTIC ACID BACTERIA
FRUCTOSE
title_short Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
title_full Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
title_fullStr Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
title_full_unstemmed Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
title_sort Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches
dc.creator.none.fl_str_mv Mohamed, María Florencia
Ruiz Rodríguez, Luciana Gabriela
Zorzoli, Maria Azul
Dorfmueller, Helge C.
Raya, Raul Ricardo
Mozzi, Fernanda Beatriz
author Mohamed, María Florencia
author_facet Mohamed, María Florencia
Ruiz Rodríguez, Luciana Gabriela
Zorzoli, Maria Azul
Dorfmueller, Helge C.
Raya, Raul Ricardo
Mozzi, Fernanda Beatriz
author_role author
author2 Ruiz Rodríguez, Luciana Gabriela
Zorzoli, Maria Azul
Dorfmueller, Helge C.
Raya, Raul Ricardo
Mozzi, Fernanda Beatriz
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv FRUCTOBACILLUS
GENOMIC DIVERSITY
FRUCTOPHILIC LACTIC ACID BACTERIA
FRUCTOSE
topic FRUCTOBACILLUS
GENOMIC DIVERSITY
FRUCTOPHILIC LACTIC ACID BACTERIA
FRUCTOSE
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The Fructobacillus genus is a group of obligately fructophilic lactic acid bacteria (FLAB) that requires the use of fructose or another electron acceptor for their growth. In this work, we performed a comparative genomic analysis within the genus Fructobacillus by using 24 available genomes to evaluate genomic and metabolic differences among these organisms. In the genome of these strains, which varies between 1.15- and 1.75-Mbp, nineteen intact prophage regions, and seven complete CRISPR-Cas type II systems were found. Phylogenetic analyses located the studied genomes in two different clades. A pangenome analysis and a functional classification of their genes revealed that genomes of the first clade presented fewer genes involved in the synthesis of amino acids and other nitrogen compounds. Moreover, the presence of genes strictly related to the use of fructose and electron acceptors was variable within the genus, although these variations were not always related to the phylogeny.
Fil: Mohamed, María Florencia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
Fil: Ruiz Rodríguez, Luciana Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
Fil: Zorzoli, Maria Azul. University of Dundee. School of Life Sciences. Division of Molecular Microbiology; Reino Unido. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Dorfmueller, Helge C.. University of Dundee. School of Life Sciences. Division of Molecular Microbiology; Reino Unido
Fil: Raya, Raul Ricardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
Fil: Mozzi, Fernanda Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Centro de Referencia para Lactobacilos; Argentina
description The Fructobacillus genus is a group of obligately fructophilic lactic acid bacteria (FLAB) that requires the use of fructose or another electron acceptor for their growth. In this work, we performed a comparative genomic analysis within the genus Fructobacillus by using 24 available genomes to evaluate genomic and metabolic differences among these organisms. In the genome of these strains, which varies between 1.15- and 1.75-Mbp, nineteen intact prophage regions, and seven complete CRISPR-Cas type II systems were found. Phylogenetic analyses located the studied genomes in two different clades. A pangenome analysis and a functional classification of their genes revealed that genomes of the first clade presented fewer genes involved in the synthesis of amino acids and other nitrogen compounds. Moreover, the presence of genes strictly related to the use of fructose and electron acceptors was variable within the genus, although these variations were not always related to the phylogeny.
publishDate 2023
dc.date.none.fl_str_mv 2023-02-16
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/238263
Mohamed, María Florencia; Ruiz Rodríguez, Luciana Gabriela; Zorzoli, Maria Azul; Dorfmueller, Helge C.; Raya, Raul Ricardo; et al.; Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches; Public Library of Science; Plos One; 18; 2; 16-2-2023; 1-25;e0281839
1932-6203
CONICET Digital
CONICET
url http://hdl.handle.net/11336/238263
identifier_str_mv Mohamed, María Florencia; Ruiz Rodríguez, Luciana Gabriela; Zorzoli, Maria Azul; Dorfmueller, Helge C.; Raya, Raul Ricardo; et al.; Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches; Public Library of Science; Plos One; 18; 2; 16-2-2023; 1-25;e0281839
1932-6203
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0281839
info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0281839
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Public Library of Science
publisher.none.fl_str_mv Public Library of Science
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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