Spike sorting for large, dense electrode arrays
- Autores
- Rossant, Cyrille; Kadir, Shabnam N.; Goodman, Dan F. M.; Schulman, John; Hunter, Maximilian L. D.; Saleem, Aman B.; Grosmark, Andres; Belluscio, Mariano Andres; Denfield, George H.; Ecker, Alexander S.; Tolias, Andreas S.; Solomon, Samuel; Buzsáki, György; Carandini, Matteo; Harris, Kenneth D.
- Año de publicación
- 2016
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Developments in microfabrication technology have enabled the production of neural electrode arrays with hundreds of closely-spaced recording sites, and electrodes with thousands of sites are currently under development. These probes will in principle allow the simultaneous recording of very large numbers of neurons. However, use of this technology requires the development of techniques for decoding the spike times of the recorded neurons, from the raw data captured from the probes. There currently exists no practical solution to this problem of ?spike sorting? for large, dense electrode arrays. Here, we present a set of novel tools to solve this problem, implemented in a suite of practical, user-friendly, open-source software. We validate these methods on data from rat cortex, demonstrating error rates as low as 5%.
Fil: Rossant, Cyrille. Colegio Universitario de Londres; Reino Unido
Fil: Kadir, Shabnam N.. Colegio Universitario de Londres; Reino Unido
Fil: Goodman, Dan F. M.. Imperial College London; Reino Unido
Fil: Schulman, John. University Of California Berkeley; Estados Unidos
Fil: Hunter, Maximilian L. D.. Colegio Universitario de Londres; Reino Unido
Fil: Saleem, Aman B.. Colegio Universitario de Londres; Reino Unido
Fil: Grosmark, Andres. University Of New York; Estados Unidos
Fil: Belluscio, Mariano Andres. University Of New York; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Fisiología y Biofísica Bernardo Houssay; Argentina
Fil: Denfield, George H.. Baylor College of Medicine. Department of Neuroscience; Estados Unidos
Fil: Ecker, Alexander S.. Baylor College of Medicine. Department of Neuroscience; Estados Unidos
Fil: Tolias, Andreas S.. Baylor College of Medicine. Department of Neuroscience; Estados Unidos
Fil: Solomon, Samuel. Colegio Universitario de Londres; Reino Unido
Fil: Buzsáki, György. University Of New York; Estados Unidos
Fil: Carandini, Matteo. Colegio Universitario de Londres; Reino Unido
Fil: Harris, Kenneth D.. Colegio Universitario de Londres; Reino Unido - Materia
-
Spike Sorting
Open-Source Software
Dense Electrode Arrays - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/14097
Ver los metadatos del registro completo
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Spike sorting for large, dense electrode arraysRossant, CyrilleKadir, Shabnam N.Goodman, Dan F. M.Schulman, JohnHunter, Maximilian L. D.Saleem, Aman B.Grosmark, AndresBelluscio, Mariano AndresDenfield, George H.Ecker, Alexander S.Tolias, Andreas S.Solomon, SamuelBuzsáki, GyörgyCarandini, MatteoHarris, Kenneth D.Spike SortingOpen-Source SoftwareDense Electrode Arrayshttps://purl.org/becyt/ford/3.1https://purl.org/becyt/ford/3Developments in microfabrication technology have enabled the production of neural electrode arrays with hundreds of closely-spaced recording sites, and electrodes with thousands of sites are currently under development. These probes will in principle allow the simultaneous recording of very large numbers of neurons. However, use of this technology requires the development of techniques for decoding the spike times of the recorded neurons, from the raw data captured from the probes. There currently exists no practical solution to this problem of ?spike sorting? for large, dense electrode arrays. Here, we present a set of novel tools to solve this problem, implemented in a suite of practical, user-friendly, open-source software. We validate these methods on data from rat cortex, demonstrating error rates as low as 5%.Fil: Rossant, Cyrille. Colegio Universitario de Londres; Reino UnidoFil: Kadir, Shabnam N.. Colegio Universitario de Londres; Reino UnidoFil: Goodman, Dan F. M.. Imperial College London; Reino UnidoFil: Schulman, John. University Of California Berkeley; Estados UnidosFil: Hunter, Maximilian L. D.. Colegio Universitario de Londres; Reino UnidoFil: Saleem, Aman B.. Colegio Universitario de Londres; Reino UnidoFil: Grosmark, Andres. University Of New York; Estados UnidosFil: Belluscio, Mariano Andres. University Of New York; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Fisiología y Biofísica Bernardo Houssay; ArgentinaFil: Denfield, George H.. Baylor College of Medicine. Department of Neuroscience; Estados UnidosFil: Ecker, Alexander S.. Baylor College of Medicine. Department of Neuroscience; Estados UnidosFil: Tolias, Andreas S.. Baylor College of Medicine. Department of Neuroscience; Estados UnidosFil: Solomon, Samuel. Colegio Universitario de Londres; Reino UnidoFil: Buzsáki, György. University Of New York; Estados UnidosFil: Carandini, Matteo. Colegio Universitario de Londres; Reino UnidoFil: Harris, Kenneth D.. Colegio Universitario de Londres; Reino UnidoNature Publishing Group2016-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/14097Rossant, Cyrille ; Kadir, Shabnam N. ; Goodman, Dan F. M. ; Schulman, John; Hunter, Maximilian L. D.; et al.; Spike sorting for large, dense electrode arrays; Nature Publishing Group; Nature Neuroscience.; 19; 4; 4-2016; 634-6411097-62561546-1726enginfo:eu-repo/semantics/altIdentifier/url/http://www.nature.com/neuro/journal/v19/n4/full/nn.4268.htmlinfo:eu-repo/semantics/altIdentifier/url/http://dx.doi.org/10.1038/nn.4268info:eu-repo/semantics/altIdentifier/url/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817237/pdf/emss-67184.pdfinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:58:01Zoai:ri.conicet.gov.ar:11336/14097instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:58:02.056CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Spike sorting for large, dense electrode arrays |
title |
Spike sorting for large, dense electrode arrays |
spellingShingle |
Spike sorting for large, dense electrode arrays Rossant, Cyrille Spike Sorting Open-Source Software Dense Electrode Arrays |
title_short |
Spike sorting for large, dense electrode arrays |
title_full |
Spike sorting for large, dense electrode arrays |
title_fullStr |
Spike sorting for large, dense electrode arrays |
title_full_unstemmed |
Spike sorting for large, dense electrode arrays |
title_sort |
Spike sorting for large, dense electrode arrays |
dc.creator.none.fl_str_mv |
Rossant, Cyrille Kadir, Shabnam N. Goodman, Dan F. M. Schulman, John Hunter, Maximilian L. D. Saleem, Aman B. Grosmark, Andres Belluscio, Mariano Andres Denfield, George H. Ecker, Alexander S. Tolias, Andreas S. Solomon, Samuel Buzsáki, György Carandini, Matteo Harris, Kenneth D. |
author |
Rossant, Cyrille |
author_facet |
Rossant, Cyrille Kadir, Shabnam N. Goodman, Dan F. M. Schulman, John Hunter, Maximilian L. D. Saleem, Aman B. Grosmark, Andres Belluscio, Mariano Andres Denfield, George H. Ecker, Alexander S. Tolias, Andreas S. Solomon, Samuel Buzsáki, György Carandini, Matteo Harris, Kenneth D. |
author_role |
author |
author2 |
Kadir, Shabnam N. Goodman, Dan F. M. Schulman, John Hunter, Maximilian L. D. Saleem, Aman B. Grosmark, Andres Belluscio, Mariano Andres Denfield, George H. Ecker, Alexander S. Tolias, Andreas S. Solomon, Samuel Buzsáki, György Carandini, Matteo Harris, Kenneth D. |
author2_role |
author author author author author author author author author author author author author author |
dc.subject.none.fl_str_mv |
Spike Sorting Open-Source Software Dense Electrode Arrays |
topic |
Spike Sorting Open-Source Software Dense Electrode Arrays |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/3.1 https://purl.org/becyt/ford/3 |
dc.description.none.fl_txt_mv |
Developments in microfabrication technology have enabled the production of neural electrode arrays with hundreds of closely-spaced recording sites, and electrodes with thousands of sites are currently under development. These probes will in principle allow the simultaneous recording of very large numbers of neurons. However, use of this technology requires the development of techniques for decoding the spike times of the recorded neurons, from the raw data captured from the probes. There currently exists no practical solution to this problem of ?spike sorting? for large, dense electrode arrays. Here, we present a set of novel tools to solve this problem, implemented in a suite of practical, user-friendly, open-source software. We validate these methods on data from rat cortex, demonstrating error rates as low as 5%. Fil: Rossant, Cyrille. Colegio Universitario de Londres; Reino Unido Fil: Kadir, Shabnam N.. Colegio Universitario de Londres; Reino Unido Fil: Goodman, Dan F. M.. Imperial College London; Reino Unido Fil: Schulman, John. University Of California Berkeley; Estados Unidos Fil: Hunter, Maximilian L. D.. Colegio Universitario de Londres; Reino Unido Fil: Saleem, Aman B.. Colegio Universitario de Londres; Reino Unido Fil: Grosmark, Andres. University Of New York; Estados Unidos Fil: Belluscio, Mariano Andres. University Of New York; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Fisiología y Biofísica Bernardo Houssay; Argentina Fil: Denfield, George H.. Baylor College of Medicine. Department of Neuroscience; Estados Unidos Fil: Ecker, Alexander S.. Baylor College of Medicine. Department of Neuroscience; Estados Unidos Fil: Tolias, Andreas S.. Baylor College of Medicine. Department of Neuroscience; Estados Unidos Fil: Solomon, Samuel. Colegio Universitario de Londres; Reino Unido Fil: Buzsáki, György. University Of New York; Estados Unidos Fil: Carandini, Matteo. Colegio Universitario de Londres; Reino Unido Fil: Harris, Kenneth D.. Colegio Universitario de Londres; Reino Unido |
description |
Developments in microfabrication technology have enabled the production of neural electrode arrays with hundreds of closely-spaced recording sites, and electrodes with thousands of sites are currently under development. These probes will in principle allow the simultaneous recording of very large numbers of neurons. However, use of this technology requires the development of techniques for decoding the spike times of the recorded neurons, from the raw data captured from the probes. There currently exists no practical solution to this problem of ?spike sorting? for large, dense electrode arrays. Here, we present a set of novel tools to solve this problem, implemented in a suite of practical, user-friendly, open-source software. We validate these methods on data from rat cortex, demonstrating error rates as low as 5%. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-04 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/14097 Rossant, Cyrille ; Kadir, Shabnam N. ; Goodman, Dan F. M. ; Schulman, John; Hunter, Maximilian L. D.; et al.; Spike sorting for large, dense electrode arrays; Nature Publishing Group; Nature Neuroscience.; 19; 4; 4-2016; 634-641 1097-6256 1546-1726 |
url |
http://hdl.handle.net/11336/14097 |
identifier_str_mv |
Rossant, Cyrille ; Kadir, Shabnam N. ; Goodman, Dan F. M. ; Schulman, John; Hunter, Maximilian L. D.; et al.; Spike sorting for large, dense electrode arrays; Nature Publishing Group; Nature Neuroscience.; 19; 4; 4-2016; 634-641 1097-6256 1546-1726 |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/http://www.nature.com/neuro/journal/v19/n4/full/nn.4268.html info:eu-repo/semantics/altIdentifier/url/http://dx.doi.org/10.1038/nn.4268 info:eu-repo/semantics/altIdentifier/url/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817237/pdf/emss-67184.pdf |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Nature Publishing Group |
publisher.none.fl_str_mv |
Nature Publishing Group |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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1844613732161814528 |
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13.070432 |