A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum

Autores
Almeida, Pedro; Goncalves, Carla; Teixeira, Sara; Libkind Frati, Diego; Bontrager, Martín; Masneuf Pomarede, Isabelle; Albertin, Warren; Durrens, Pascal; Sherman, David James; Marullo, Philippe; Hittinger, Chris Todd; Gonçalves, Paula; Sampaio, José Paulo
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
In addition to Saccharomyces cerevisiae, the cryotolerant yeast species S. uvarum is also used for wine and cider fermentation but nothing is known about its natural history. Here we use a population genomics approach to investigate its global phylogeography and domestication fingerprints using a collection of isolates obtained from fermented beverages and from natural environments on five continents. South American isolates contain more genetic diversity than that found in the Northern Hemisphere. Moreover, coalescence analyses suggest that a Patagonian sub-population gave rise to the Holarctic population through a recent bottleneck. Holarctic strains display multiple introgressions from other Saccharomyces species, those from S. eubayanus being prevalent in European strains associated with humandriven fermentations. These introgressions are absent in the large majority of wild strains and gene ontology analyses indicate that several gene categories relevant for wine fermentation are overrepresented. Such findings constitute a first indication of domestication in S. uvarum.
Fil: Almeida, Pedro. Universidade Nova de Lisboa; Portugal
Fil: Goncalves, Carla. Universidade Nova de Lisboa; Portugal
Fil: Teixeira, Sara. Universidade Nova de Lisboa; Portugal
Fil: Libkind Frati, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Patagonia Norte. Instituto de Investigación en Biodiversidad y Medioambiente; Argentina. Universidad Nacional del Comahue; Argentina
Fil: Bontrager, Martín. University Of Wisconsin; Estados Unidos
Fil: Masneuf Pomarede, Isabelle. Bordeaux Sciences agro; Francia
Fil: Albertin, Warren. Universite de Bordeaux; Francia
Fil: Durrens, Pascal. Universite de Bordeaux; Francia
Fil: Sherman, David James. Universite de Bordeaux; Francia
Fil: Marullo, Philippe. Universite de Bordeaux; Francia. BIOLAFFORT; Francia
Fil: Hittinger, Chris Todd. University Of Wisconsin; Estados Unidos
Fil: Gonçalves, Paula. Universidade Nova de Lisboa; Portugal
Fil: Sampaio, José Paulo. Universidade Nova de Lisboa; Portugal
Materia
Domestication
Patagonia
Genomics
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/11776
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/11776
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarumAlmeida, PedroGoncalves, CarlaTeixeira, SaraLibkind Frati, DiegoBontrager, MartínMasneuf Pomarede, IsabelleAlbertin, WarrenDurrens, PascalSherman, David JamesMarullo, PhilippeHittinger, Chris ToddGonçalves, PaulaSampaio, José PauloDomesticationPatagoniaGenomicshttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1In addition to Saccharomyces cerevisiae, the cryotolerant yeast species S. uvarum is also used for wine and cider fermentation but nothing is known about its natural history. Here we use a population genomics approach to investigate its global phylogeography and domestication fingerprints using a collection of isolates obtained from fermented beverages and from natural environments on five continents. South American isolates contain more genetic diversity than that found in the Northern Hemisphere. Moreover, coalescence analyses suggest that a Patagonian sub-population gave rise to the Holarctic population through a recent bottleneck. Holarctic strains display multiple introgressions from other Saccharomyces species, those from S. eubayanus being prevalent in European strains associated with humandriven fermentations. These introgressions are absent in the large majority of wild strains and gene ontology analyses indicate that several gene categories relevant for wine fermentation are overrepresented. Such findings constitute a first indication of domestication in S. uvarum.Fil: Almeida, Pedro. Universidade Nova de Lisboa; PortugalFil: Goncalves, Carla. Universidade Nova de Lisboa; PortugalFil: Teixeira, Sara. Universidade Nova de Lisboa; PortugalFil: Libkind Frati, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Patagonia Norte. Instituto de Investigación en Biodiversidad y Medioambiente; Argentina. Universidad Nacional del Comahue; ArgentinaFil: Bontrager, Martín. University Of Wisconsin; Estados UnidosFil: Masneuf Pomarede, Isabelle. Bordeaux Sciences agro; FranciaFil: Albertin, Warren. Universite de Bordeaux; FranciaFil: Durrens, Pascal. Universite de Bordeaux; FranciaFil: Sherman, David James. Universite de Bordeaux; FranciaFil: Marullo, Philippe. Universite de Bordeaux; Francia. BIOLAFFORT; FranciaFil: Hittinger, Chris Todd. University Of Wisconsin; Estados UnidosFil: Gonçalves, Paula. Universidade Nova de Lisboa; PortugalFil: Sampaio, José Paulo. Universidade Nova de Lisboa; PortugalNature2014-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/11776Almeida, Pedro; Goncalves, Carla; Teixeira, Sara; Libkind Frati, Diego; Bontrager, Martín; et al.; A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum; Nature; Nature Communications; 4044; 6-2014; 1-122041-1723enginfo:eu-repo/semantics/altIdentifier/doi/10.1038/ncomms5044info:eu-repo/semantics/altIdentifier/url/http://www.nature.com/articles/ncomms5044info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T14:23:04Zoai:ri.conicet.gov.ar:11336/11776instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 14:23:04.597CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
title A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
spellingShingle A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
Almeida, Pedro
Domestication
Patagonia
Genomics
title_short A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
title_full A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
title_fullStr A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
title_full_unstemmed A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
title_sort A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum
dc.creator.none.fl_str_mv Almeida, Pedro
Goncalves, Carla
Teixeira, Sara
Libkind Frati, Diego
Bontrager, Martín
Masneuf Pomarede, Isabelle
Albertin, Warren
Durrens, Pascal
Sherman, David James
Marullo, Philippe
Hittinger, Chris Todd
Gonçalves, Paula
Sampaio, José Paulo
author Almeida, Pedro
author_facet Almeida, Pedro
Goncalves, Carla
Teixeira, Sara
Libkind Frati, Diego
Bontrager, Martín
Masneuf Pomarede, Isabelle
Albertin, Warren
Durrens, Pascal
Sherman, David James
Marullo, Philippe
Hittinger, Chris Todd
Gonçalves, Paula
Sampaio, José Paulo
author_role author
author2 Goncalves, Carla
Teixeira, Sara
Libkind Frati, Diego
Bontrager, Martín
Masneuf Pomarede, Isabelle
Albertin, Warren
Durrens, Pascal
Sherman, David James
Marullo, Philippe
Hittinger, Chris Todd
Gonçalves, Paula
Sampaio, José Paulo
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Domestication
Patagonia
Genomics
topic Domestication
Patagonia
Genomics
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv In addition to Saccharomyces cerevisiae, the cryotolerant yeast species S. uvarum is also used for wine and cider fermentation but nothing is known about its natural history. Here we use a population genomics approach to investigate its global phylogeography and domestication fingerprints using a collection of isolates obtained from fermented beverages and from natural environments on five continents. South American isolates contain more genetic diversity than that found in the Northern Hemisphere. Moreover, coalescence analyses suggest that a Patagonian sub-population gave rise to the Holarctic population through a recent bottleneck. Holarctic strains display multiple introgressions from other Saccharomyces species, those from S. eubayanus being prevalent in European strains associated with humandriven fermentations. These introgressions are absent in the large majority of wild strains and gene ontology analyses indicate that several gene categories relevant for wine fermentation are overrepresented. Such findings constitute a first indication of domestication in S. uvarum.
Fil: Almeida, Pedro. Universidade Nova de Lisboa; Portugal
Fil: Goncalves, Carla. Universidade Nova de Lisboa; Portugal
Fil: Teixeira, Sara. Universidade Nova de Lisboa; Portugal
Fil: Libkind Frati, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Patagonia Norte. Instituto de Investigación en Biodiversidad y Medioambiente; Argentina. Universidad Nacional del Comahue; Argentina
Fil: Bontrager, Martín. University Of Wisconsin; Estados Unidos
Fil: Masneuf Pomarede, Isabelle. Bordeaux Sciences agro; Francia
Fil: Albertin, Warren. Universite de Bordeaux; Francia
Fil: Durrens, Pascal. Universite de Bordeaux; Francia
Fil: Sherman, David James. Universite de Bordeaux; Francia
Fil: Marullo, Philippe. Universite de Bordeaux; Francia. BIOLAFFORT; Francia
Fil: Hittinger, Chris Todd. University Of Wisconsin; Estados Unidos
Fil: Gonçalves, Paula. Universidade Nova de Lisboa; Portugal
Fil: Sampaio, José Paulo. Universidade Nova de Lisboa; Portugal
description In addition to Saccharomyces cerevisiae, the cryotolerant yeast species S. uvarum is also used for wine and cider fermentation but nothing is known about its natural history. Here we use a population genomics approach to investigate its global phylogeography and domestication fingerprints using a collection of isolates obtained from fermented beverages and from natural environments on five continents. South American isolates contain more genetic diversity than that found in the Northern Hemisphere. Moreover, coalescence analyses suggest that a Patagonian sub-population gave rise to the Holarctic population through a recent bottleneck. Holarctic strains display multiple introgressions from other Saccharomyces species, those from S. eubayanus being prevalent in European strains associated with humandriven fermentations. These introgressions are absent in the large majority of wild strains and gene ontology analyses indicate that several gene categories relevant for wine fermentation are overrepresented. Such findings constitute a first indication of domestication in S. uvarum.
publishDate 2014
dc.date.none.fl_str_mv 2014-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/11776
Almeida, Pedro; Goncalves, Carla; Teixeira, Sara; Libkind Frati, Diego; Bontrager, Martín; et al.; A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum; Nature; Nature Communications; 4044; 6-2014; 1-12
2041-1723
url http://hdl.handle.net/11336/11776
identifier_str_mv Almeida, Pedro; Goncalves, Carla; Teixeira, Sara; Libkind Frati, Diego; Bontrager, Martín; et al.; A Gondwanan Imprint on the Global Diversity and Domestication of the Wine and Cider Yeast Saccharomyces uvarum; Nature; Nature Communications; 4044; 6-2014; 1-12
2041-1723
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1038/ncomms5044
info:eu-repo/semantics/altIdentifier/url/http://www.nature.com/articles/ncomms5044
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Nature
publisher.none.fl_str_mv Nature
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.22299

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