Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits

Autores
Gatti, Ileana; Guindón, María Fernanda; Bermejo, Carolina Julieta; Cointry Peix, Enrique Luis
Año de publicación
2017
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Plant phenotyping links genomics with plant ecophysiology and agronomy. It is usually performed by non-destructive, automated and image-based technology and generates information for efficient and searchable digital characterization of crop that can be performed during routine, periodical regeneration of accessions in germplasm collections. In the present work, ninety-two accessions of Pisum from different species and subspecies were studied during 2015 and 2016. Size and colour traits were measured using digital images from a Samsung CLX 3300 scanner and analysed with appropriate software; also seed weight, plant height and days to flowering were measured. Highly significant differences between accessions and species and subspecies for all these traits were found. When distances among species and subspecies are calculated, P. sativum subsp. sativum showed the greatest distance with P. fulvum (8.02) followed by P. abyssinicum (7.13); while the smallest distance was found between P. fulvum and P. sativum subsp. transcaucasicum (3.16). A Neighbour-joining tree with a cofenetic r of 0.985 was obtained. Seed and pod characteristics as colour parameters and size, obtained by digital phenotyping, have proved to be suitable markers for genetic diversity evaluation and they are useful in evolutionary analysis, allowing the discrimination of the main wild and cultivated species in the genus Pisum.
Fil: Gatti, Ileana. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Departamento de Producción Vegetal. Cátedra de Mejoramiento Vegetal y Producción de Semillas; Argentina
Fil: Guindón, María Fernanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Investigaciones en Ciencias Agrarias de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Instituto de Investigaciones en Ciencias Agrarias de Rosario; Argentina
Fil: Bermejo, Carolina Julieta. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Investigaciones en Ciencias Agrarias de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Instituto de Investigaciones en Ciencias Agrarias de Rosario; Argentina
Fil: Cointry Peix, Enrique Luis. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Departamento de Producción Vegetal. Cátedra de Mejoramiento Vegetal y Producción de Semillas; Argentina
Materia
PISUM
SEED COAT COLOR
ORIGIN
VARIABILITY
PHENOTYPING
LEGUMES
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/100738
Acceder
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network_name_str CONICET Digital (CONICET)
spelling Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traitsGatti, IleanaGuindón, María FernandaBermejo, Carolina JulietaCointry Peix, Enrique LuisPISUMSEED COAT COLORORIGINVARIABILITYPHENOTYPINGLEGUMEShttps://purl.org/becyt/ford/4.1https://purl.org/becyt/ford/4Plant phenotyping links genomics with plant ecophysiology and agronomy. It is usually performed by non-destructive, automated and image-based technology and generates information for efficient and searchable digital characterization of crop that can be performed during routine, periodical regeneration of accessions in germplasm collections. In the present work, ninety-two accessions of Pisum from different species and subspecies were studied during 2015 and 2016. Size and colour traits were measured using digital images from a Samsung CLX 3300 scanner and analysed with appropriate software; also seed weight, plant height and days to flowering were measured. Highly significant differences between accessions and species and subspecies for all these traits were found. When distances among species and subspecies are calculated, P. sativum subsp. sativum showed the greatest distance with P. fulvum (8.02) followed by P. abyssinicum (7.13); while the smallest distance was found between P. fulvum and P. sativum subsp. transcaucasicum (3.16). A Neighbour-joining tree with a cofenetic r of 0.985 was obtained. Seed and pod characteristics as colour parameters and size, obtained by digital phenotyping, have proved to be suitable markers for genetic diversity evaluation and they are useful in evolutionary analysis, allowing the discrimination of the main wild and cultivated species in the genus Pisum.Fil: Gatti, Ileana. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Departamento de Producción Vegetal. Cátedra de Mejoramiento Vegetal y Producción de Semillas; ArgentinaFil: Guindón, María Fernanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Investigaciones en Ciencias Agrarias de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Instituto de Investigaciones en Ciencias Agrarias de Rosario; ArgentinaFil: Bermejo, Carolina Julieta. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Investigaciones en Ciencias Agrarias de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Instituto de Investigaciones en Ciencias Agrarias de Rosario; ArgentinaFil: Cointry Peix, Enrique Luis. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Departamento de Producción Vegetal. Cátedra de Mejoramiento Vegetal y Producción de Semillas; ArgentinaSouthern Cross Publishing2017-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/100738Gatti, Ileana; Guindón, María Fernanda; Bermejo, Carolina Julieta; Cointry Peix, Enrique Luis; Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits; Southern Cross Publishing; Australian Journal of Crop Science; 11; 12; 12-2017; 1599-16051835-26931835-2707CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://www.cropj.com/gatti_11_12_2017_1599_1605.pdfinfo:eu-repo/semantics/altIdentifier/doi/10.21475/ajcs.17.11.12.pne771info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:34:47Zoai:ri.conicet.gov.ar:11336/100738instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:34:48.126CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
title Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
spellingShingle Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
Gatti, Ileana
PISUM
SEED COAT COLOR
ORIGIN
VARIABILITY
PHENOTYPING
LEGUMES
title_short Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
title_full Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
title_fullStr Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
title_full_unstemmed Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
title_sort Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits
dc.creator.none.fl_str_mv Gatti, Ileana
Guindón, María Fernanda
Bermejo, Carolina Julieta
Cointry Peix, Enrique Luis
author Gatti, Ileana
author_facet Gatti, Ileana
Guindón, María Fernanda
Bermejo, Carolina Julieta
Cointry Peix, Enrique Luis
author_role author
author2 Guindón, María Fernanda
Bermejo, Carolina Julieta
Cointry Peix, Enrique Luis
author2_role author
author
author
dc.subject.none.fl_str_mv PISUM
SEED COAT COLOR
ORIGIN
VARIABILITY
PHENOTYPING
LEGUMES
topic PISUM
SEED COAT COLOR
ORIGIN
VARIABILITY
PHENOTYPING
LEGUMES
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.1
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv Plant phenotyping links genomics with plant ecophysiology and agronomy. It is usually performed by non-destructive, automated and image-based technology and generates information for efficient and searchable digital characterization of crop that can be performed during routine, periodical regeneration of accessions in germplasm collections. In the present work, ninety-two accessions of Pisum from different species and subspecies were studied during 2015 and 2016. Size and colour traits were measured using digital images from a Samsung CLX 3300 scanner and analysed with appropriate software; also seed weight, plant height and days to flowering were measured. Highly significant differences between accessions and species and subspecies for all these traits were found. When distances among species and subspecies are calculated, P. sativum subsp. sativum showed the greatest distance with P. fulvum (8.02) followed by P. abyssinicum (7.13); while the smallest distance was found between P. fulvum and P. sativum subsp. transcaucasicum (3.16). A Neighbour-joining tree with a cofenetic r of 0.985 was obtained. Seed and pod characteristics as colour parameters and size, obtained by digital phenotyping, have proved to be suitable markers for genetic diversity evaluation and they are useful in evolutionary analysis, allowing the discrimination of the main wild and cultivated species in the genus Pisum.
Fil: Gatti, Ileana. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Departamento de Producción Vegetal. Cátedra de Mejoramiento Vegetal y Producción de Semillas; Argentina
Fil: Guindón, María Fernanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Investigaciones en Ciencias Agrarias de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Instituto de Investigaciones en Ciencias Agrarias de Rosario; Argentina
Fil: Bermejo, Carolina Julieta. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Investigaciones en Ciencias Agrarias de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Instituto de Investigaciones en Ciencias Agrarias de Rosario; Argentina
Fil: Cointry Peix, Enrique Luis. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias. Departamento de Producción Vegetal. Cátedra de Mejoramiento Vegetal y Producción de Semillas; Argentina
description Plant phenotyping links genomics with plant ecophysiology and agronomy. It is usually performed by non-destructive, automated and image-based technology and generates information for efficient and searchable digital characterization of crop that can be performed during routine, periodical regeneration of accessions in germplasm collections. In the present work, ninety-two accessions of Pisum from different species and subspecies were studied during 2015 and 2016. Size and colour traits were measured using digital images from a Samsung CLX 3300 scanner and analysed with appropriate software; also seed weight, plant height and days to flowering were measured. Highly significant differences between accessions and species and subspecies for all these traits were found. When distances among species and subspecies are calculated, P. sativum subsp. sativum showed the greatest distance with P. fulvum (8.02) followed by P. abyssinicum (7.13); while the smallest distance was found between P. fulvum and P. sativum subsp. transcaucasicum (3.16). A Neighbour-joining tree with a cofenetic r of 0.985 was obtained. Seed and pod characteristics as colour parameters and size, obtained by digital phenotyping, have proved to be suitable markers for genetic diversity evaluation and they are useful in evolutionary analysis, allowing the discrimination of the main wild and cultivated species in the genus Pisum.
publishDate 2017
dc.date.none.fl_str_mv 2017-12
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/100738
Gatti, Ileana; Guindón, María Fernanda; Bermejo, Carolina Julieta; Cointry Peix, Enrique Luis; Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits; Southern Cross Publishing; Australian Journal of Crop Science; 11; 12; 12-2017; 1599-1605
1835-2693
1835-2707
CONICET Digital
CONICET
url http://hdl.handle.net/11336/100738
identifier_str_mv Gatti, Ileana; Guindón, María Fernanda; Bermejo, Carolina Julieta; Cointry Peix, Enrique Luis; Analysis of variability and phylogeny in pisum (Pisum spp.) using digital phenotyping and morphological traits; Southern Cross Publishing; Australian Journal of Crop Science; 11; 12; 12-2017; 1599-1605
1835-2693
1835-2707
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/http://www.cropj.com/gatti_11_12_2017_1599_1605.pdf
info:eu-repo/semantics/altIdentifier/doi/10.21475/ajcs.17.11.12.pne771
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Southern Cross Publishing
publisher.none.fl_str_mv Southern Cross Publishing
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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