Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species

Autores
Mahler, B.; Schneider, A.R.R.; Di Giacomo, A.S.; Di Giacomo, A.G.; Reboreda, J.C.; Tiedemann, R.
Año de publicación
2013
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Tyrant flycatchers (Aves: Tyrannidae) are endemic to the New World, and many species of this group are threatened or near-threatened at the global level. The aim of this study was to test the 18 microsatellite markers that have been published for other Tyrant flycatchers in the Strange-tailed Tyrant (Alectrurus risora) and the Sharp-tailed Tyrant (Culicivora caudacuta), two endemic species of southern South American grasslands that are classified as vulnerable. We also analyzed the usefulness of loci in relation to phylogenetic distance to the source species. Amplification success was high in both species (77 to 83%) and did not differ between the more closely and more distantly related species to the source species. Polymorphism success was also similar for both species, with 9 and 8 loci being polymorphic, respectively. An increased phylogenetic distance thus does not gradually lead to allelic or locus dropouts, implying that in Tyrant flycatchers, the published loci are useful independent of species relatedness. © FUNPEC-RP.
Fil:Mahler, B. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Di Giacomo, A.S. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Reboreda, J.C. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fuente
Genet. Mol. Res. 2013;12(3):2966-2972
Materia
Alectrurus risora
Culicivora caudacuta
Microsatellites
Tyrannidae
Alectrurus risora
allele
article
bird
controlled study
Culicivora caudacuta
endangered species
endemic species
gene amplification
gene locus
genetic polymorphism
grassland
microsatellite marker
nonhuman
phylogeny
South America
Animals
DNA, Mitochondrial
Endangered Species
Evolution, Molecular
Microsatellite Repeats
Passeriformes
Phylogeny
Polymorphism, Genetic
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by/2.5/ar
Repositorio
Biblioteca Digital (UBA-FCEN)
Institución
Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
OAI Identificador
paperaa:paper_16765680_v12_n3_p2966_Mahler
Acceder
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oai_identifier_str paperaa:paper_16765680_v12_n3_p2966_Mahler
network_acronym_str BDUBAFCEN
repository_id_str 1896
network_name_str Biblioteca Digital (UBA-FCEN)
spelling Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened speciesMahler, B.Schneider, A.R.R.Di Giacomo, A.S.Di Giacomo, A.G.Reboreda, J.C.Tiedemann, R.Alectrurus risoraCulicivora caudacutaMicrosatellitesTyrannidaeAlectrurus risoraallelearticlebirdcontrolled studyCulicivora caudacutaendangered speciesendemic speciesgene amplificationgene locusgenetic polymorphismgrasslandmicrosatellite markernonhumanphylogenySouth AmericaAnimalsDNA, MitochondrialEndangered SpeciesEvolution, MolecularMicrosatellite RepeatsPasseriformesPhylogenyPolymorphism, GeneticTyrant flycatchers (Aves: Tyrannidae) are endemic to the New World, and many species of this group are threatened or near-threatened at the global level. The aim of this study was to test the 18 microsatellite markers that have been published for other Tyrant flycatchers in the Strange-tailed Tyrant (Alectrurus risora) and the Sharp-tailed Tyrant (Culicivora caudacuta), two endemic species of southern South American grasslands that are classified as vulnerable. We also analyzed the usefulness of loci in relation to phylogenetic distance to the source species. Amplification success was high in both species (77 to 83%) and did not differ between the more closely and more distantly related species to the source species. Polymorphism success was also similar for both species, with 9 and 8 loci being polymorphic, respectively. An increased phylogenetic distance thus does not gradually lead to allelic or locus dropouts, implying that in Tyrant flycatchers, the published loci are useful independent of species relatedness. © FUNPEC-RP.Fil:Mahler, B. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.Fil:Di Giacomo, A.S. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.Fil:Reboreda, J.C. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.2013info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12110/paper_16765680_v12_n3_p2966_MahlerGenet. Mol. Res. 2013;12(3):2966-2972reponame:Biblioteca Digital (UBA-FCEN)instname:Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturalesinstacron:UBA-FCENenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/2.5/ar2025-09-29T13:42:54Zpaperaa:paper_16765680_v12_n3_p2966_MahlerInstitucionalhttps://digital.bl.fcen.uba.ar/Universidad públicaNo correspondehttps://digital.bl.fcen.uba.ar/cgi-bin/oaiserver.cgiana@bl.fcen.uba.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:18962025-09-29 13:42:55.95Biblioteca Digital (UBA-FCEN) - Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturalesfalse
dc.title.none.fl_str_mv Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
title Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
spellingShingle Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
Mahler, B.
Alectrurus risora
Culicivora caudacuta
Microsatellites
Tyrannidae
Alectrurus risora
allele
article
bird
controlled study
Culicivora caudacuta
endangered species
endemic species
gene amplification
gene locus
genetic polymorphism
grassland
microsatellite marker
nonhuman
phylogeny
South America
Animals
DNA, Mitochondrial
Endangered Species
Evolution, Molecular
Microsatellite Repeats
Passeriformes
Phylogeny
Polymorphism, Genetic
title_short Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
title_full Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
title_fullStr Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
title_full_unstemmed Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
title_sort Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae): A test using two globally threatened species
dc.creator.none.fl_str_mv Mahler, B.
Schneider, A.R.R.
Di Giacomo, A.S.
Di Giacomo, A.G.
Reboreda, J.C.
Tiedemann, R.
author Mahler, B.
author_facet Mahler, B.
Schneider, A.R.R.
Di Giacomo, A.S.
Di Giacomo, A.G.
Reboreda, J.C.
Tiedemann, R.
author_role author
author2 Schneider, A.R.R.
Di Giacomo, A.S.
Di Giacomo, A.G.
Reboreda, J.C.
Tiedemann, R.
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv Alectrurus risora
Culicivora caudacuta
Microsatellites
Tyrannidae
Alectrurus risora
allele
article
bird
controlled study
Culicivora caudacuta
endangered species
endemic species
gene amplification
gene locus
genetic polymorphism
grassland
microsatellite marker
nonhuman
phylogeny
South America
Animals
DNA, Mitochondrial
Endangered Species
Evolution, Molecular
Microsatellite Repeats
Passeriformes
Phylogeny
Polymorphism, Genetic
topic Alectrurus risora
Culicivora caudacuta
Microsatellites
Tyrannidae
Alectrurus risora
allele
article
bird
controlled study
Culicivora caudacuta
endangered species
endemic species
gene amplification
gene locus
genetic polymorphism
grassland
microsatellite marker
nonhuman
phylogeny
South America
Animals
DNA, Mitochondrial
Endangered Species
Evolution, Molecular
Microsatellite Repeats
Passeriformes
Phylogeny
Polymorphism, Genetic
dc.description.none.fl_txt_mv Tyrant flycatchers (Aves: Tyrannidae) are endemic to the New World, and many species of this group are threatened or near-threatened at the global level. The aim of this study was to test the 18 microsatellite markers that have been published for other Tyrant flycatchers in the Strange-tailed Tyrant (Alectrurus risora) and the Sharp-tailed Tyrant (Culicivora caudacuta), two endemic species of southern South American grasslands that are classified as vulnerable. We also analyzed the usefulness of loci in relation to phylogenetic distance to the source species. Amplification success was high in both species (77 to 83%) and did not differ between the more closely and more distantly related species to the source species. Polymorphism success was also similar for both species, with 9 and 8 loci being polymorphic, respectively. An increased phylogenetic distance thus does not gradually lead to allelic or locus dropouts, implying that in Tyrant flycatchers, the published loci are useful independent of species relatedness. © FUNPEC-RP.
Fil:Mahler, B. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Di Giacomo, A.S. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Reboreda, J.C. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
description Tyrant flycatchers (Aves: Tyrannidae) are endemic to the New World, and many species of this group are threatened or near-threatened at the global level. The aim of this study was to test the 18 microsatellite markers that have been published for other Tyrant flycatchers in the Strange-tailed Tyrant (Alectrurus risora) and the Sharp-tailed Tyrant (Culicivora caudacuta), two endemic species of southern South American grasslands that are classified as vulnerable. We also analyzed the usefulness of loci in relation to phylogenetic distance to the source species. Amplification success was high in both species (77 to 83%) and did not differ between the more closely and more distantly related species to the source species. Polymorphism success was also similar for both species, with 9 and 8 loci being polymorphic, respectively. An increased phylogenetic distance thus does not gradually lead to allelic or locus dropouts, implying that in Tyrant flycatchers, the published loci are useful independent of species relatedness. © FUNPEC-RP.
publishDate 2013
dc.date.none.fl_str_mv 2013
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12110/paper_16765680_v12_n3_p2966_Mahler
url http://hdl.handle.net/20.500.12110/paper_16765680_v12_n3_p2966_Mahler
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by/2.5/ar
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by/2.5/ar
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Genet. Mol. Res. 2013;12(3):2966-2972
reponame:Biblioteca Digital (UBA-FCEN)
instname:Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
instacron:UBA-FCEN
reponame_str Biblioteca Digital (UBA-FCEN)
collection Biblioteca Digital (UBA-FCEN)
instname_str Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
instacron_str UBA-FCEN
institution UBA-FCEN
repository.name.fl_str_mv Biblioteca Digital (UBA-FCEN) - Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
repository.mail.fl_str_mv ana@bl.fcen.uba.ar
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score 13.070432

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